Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS04800 and EX31_RS04805 are separated by 589 nucleotides EX31_RS04805 and EX31_RS04810 are separated by 105 nucleotides EX31_RS04810 and EX31_RS04815 are separated by 72 nucleotides
EX31_RS04800: EX31_RS04800 - two-component system response regulator OmpR, at 77,970 to 78,689
_RS04800
EX31_RS04805: EX31_RS04805 - type 1 fimbrial protein, at 79,279 to 79,827
_RS04805
EX31_RS04810: EX31_RS04810 - molecular chaperone, at 79,933 to 80,619
_RS04810
EX31_RS04815: EX31_RS04815 - fimbrial biogenesis outer membrane usher protein, at 80,692 to 83,235
_RS04815
Position (kb) 79
80 Strain fitness (log2 ratio) -2
-1
0
1
2 at 78.377 kb on + strand, within EX31_RS04800 at 78.377 kb on + strand, within EX31_RS04800 at 78.378 kb on - strand, within EX31_RS04800 at 78.385 kb on + strand, within EX31_RS04800 at 78.386 kb on - strand, within EX31_RS04800 at 78.386 kb on - strand, within EX31_RS04800 at 78.467 kb on + strand, within EX31_RS04800 at 78.494 kb on + strand, within EX31_RS04800 at 78.494 kb on + strand, within EX31_RS04800 at 78.495 kb on - strand, within EX31_RS04800 at 78.495 kb on - strand, within EX31_RS04800 at 78.495 kb on - strand, within EX31_RS04800 at 78.495 kb on - strand, within EX31_RS04800 at 78.495 kb on - strand, within EX31_RS04800 at 78.495 kb on - strand, within EX31_RS04800 at 78.498 kb on + strand, within EX31_RS04800 at 78.622 kb on + strand at 78.691 kb on + strand at 78.691 kb on + strand at 78.691 kb on + strand at 78.692 kb on - strand at 78.692 kb on - strand at 78.692 kb on - strand at 78.725 kb on + strand at 78.725 kb on + strand at 78.725 kb on + strand at 78.725 kb on + strand at 78.726 kb on - strand at 78.726 kb on - strand at 78.726 kb on - strand at 78.726 kb on - strand at 78.726 kb on - strand at 78.726 kb on - strand at 78.726 kb on - strand at 78.726 kb on - strand at 78.726 kb on - strand at 78.726 kb on - strand at 78.766 kb on + strand at 78.767 kb on - strand at 78.767 kb on - strand at 78.767 kb on - strand at 78.767 kb on - strand at 78.767 kb on - strand at 78.767 kb on - strand at 78.768 kb on + strand at 78.768 kb on + strand at 78.768 kb on + strand at 78.768 kb on + strand at 78.768 kb on + strand at 78.768 kb on + strand at 78.768 kb on + strand at 78.768 kb on + strand at 78.768 kb on + strand at 78.768 kb on + strand at 78.768 kb on + strand at 78.768 kb on + strand at 78.769 kb on - strand at 78.769 kb on - strand at 78.769 kb on - strand at 78.769 kb on - strand at 78.769 kb on - strand at 78.769 kb on - strand at 78.769 kb on - strand at 78.769 kb on - strand at 78.769 kb on - strand at 78.769 kb on - strand at 78.769 kb on - strand at 78.769 kb on - strand at 78.769 kb on - strand at 78.769 kb on - strand at 78.769 kb on - strand at 78.770 kb on + strand at 78.770 kb on + strand at 78.770 kb on + strand at 78.770 kb on + strand at 78.770 kb on + strand at 78.770 kb on + strand at 78.770 kb on + strand at 78.770 kb on + strand at 78.770 kb on + strand at 78.771 kb on - strand at 78.771 kb on - strand at 78.771 kb on - strand at 78.771 kb on - strand at 78.771 kb on - strand at 78.771 kb on - strand at 78.771 kb on - strand at 78.771 kb on - strand at 78.771 kb on - strand at 78.771 kb on - strand at 78.813 kb on + strand at 78.814 kb on - strand at 78.822 kb on + strand at 78.823 kb on - strand at 78.823 kb on - strand at 78.908 kb on - strand at 78.931 kb on - strand at 78.967 kb on + strand at 78.984 kb on + strand at 78.984 kb on + strand at 78.988 kb on + strand at 79.004 kb on - strand at 79.040 kb on - strand at 79.097 kb on - strand at 79.097 kb on - strand at 79.139 kb on - strand at 79.139 kb on - strand at 79.167 kb on - strand at 79.239 kb on - strand at 79.339 kb on + strand, within EX31_RS04805 at 79.339 kb on + strand, within EX31_RS04805 at 79.419 kb on + strand, within EX31_RS04805 at 79.419 kb on + strand, within EX31_RS04805 at 79.419 kb on + strand, within EX31_RS04805 at 79.421 kb on + strand, within EX31_RS04805 at 79.421 kb on + strand, within EX31_RS04805 at 79.421 kb on + strand, within EX31_RS04805 at 79.421 kb on + strand, within EX31_RS04805 at 79.436 kb on - strand, within EX31_RS04805 at 79.489 kb on - strand, within EX31_RS04805 at 79.489 kb on - strand, within EX31_RS04805 at 79.503 kb on + strand, within EX31_RS04805 at 79.527 kb on + strand, within EX31_RS04805 at 79.528 kb on - strand, within EX31_RS04805 at 79.533 kb on + strand, within EX31_RS04805 at 79.533 kb on + strand, within EX31_RS04805 at 79.534 kb on - strand, within EX31_RS04805 at 79.534 kb on - strand, within EX31_RS04805 at 79.534 kb on - strand, within EX31_RS04805 at 79.566 kb on + strand, within EX31_RS04805 at 79.566 kb on + strand, within EX31_RS04805 at 79.566 kb on + strand, within EX31_RS04805 at 79.567 kb on - strand, within EX31_RS04805 at 79.578 kb on + strand, within EX31_RS04805 at 79.578 kb on + strand, within EX31_RS04805 at 79.609 kb on + strand, within EX31_RS04805 at 79.610 kb on - strand, within EX31_RS04805 at 79.610 kb on - strand, within EX31_RS04805 at 79.722 kb on + strand, within EX31_RS04805 at 79.744 kb on + strand, within EX31_RS04805 at 79.745 kb on - strand, within EX31_RS04805 at 79.747 kb on + strand, within EX31_RS04805 at 79.747 kb on + strand, within EX31_RS04805 at 79.747 kb on + strand, within EX31_RS04805 at 79.748 kb on - strand, within EX31_RS04805 at 79.759 kb on - strand, within EX31_RS04805 at 79.819 kb on + strand at 79.825 kb on + strand at 79.825 kb on + strand at 79.826 kb on - strand at 79.829 kb on + strand at 79.829 kb on + strand at 79.829 kb on + strand at 79.830 kb on - strand at 79.878 kb on + strand at 79.878 kb on + strand at 79.903 kb on + strand at 79.905 kb on + strand at 79.906 kb on - strand at 79.939 kb on - strand at 79.968 kb on + strand at 79.970 kb on + strand at 79.971 kb on - strand at 79.971 kb on - strand at 79.984 kb on - strand at 79.995 kb on - strand at 80.038 kb on + strand, within EX31_RS04810 at 80.152 kb on - strand, within EX31_RS04810 at 80.152 kb on - strand, within EX31_RS04810 at 80.212 kb on + strand, within EX31_RS04810 at 80.254 kb on + strand, within EX31_RS04810 at 80.256 kb on + strand, within EX31_RS04810 at 80.256 kb on + strand, within EX31_RS04810 at 80.257 kb on - strand, within EX31_RS04810 at 80.307 kb on + strand, within EX31_RS04810 at 80.307 kb on + strand, within EX31_RS04810 at 80.308 kb on - strand, within EX31_RS04810 at 80.323 kb on - strand, within EX31_RS04810 at 80.406 kb on + strand, within EX31_RS04810 at 80.406 kb on + strand, within EX31_RS04810 at 80.440 kb on + strand, within EX31_RS04810 at 80.573 kb on + strand at 80.573 kb on + strand at 80.574 kb on - strand at 80.574 kb on - strand at 80.582 kb on - strand at 80.603 kb on - strand at 80.617 kb on + strand at 80.642 kb on + strand at 80.642 kb on + strand at 80.642 kb on + strand at 80.642 kb on + strand at 80.643 kb on - strand at 80.643 kb on - strand at 80.664 kb on + strand at 80.665 kb on - strand at 80.691 kb on + strand at 80.692 kb on - strand at 80.692 kb on - strand at 80.739 kb on + strand at 80.740 kb on - strand at 80.766 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 78,377 + EX31_RS04800 0.57 +0.4 78,377 + EX31_RS04800 0.57 +0.7 78,378 - EX31_RS04800 0.57 +1.1 78,385 + EX31_RS04800 0.58 +0.7 78,386 - EX31_RS04800 0.58 +1.0 78,386 - EX31_RS04800 0.58 +1.3 78,467 + EX31_RS04800 0.69 +1.3 78,494 + EX31_RS04800 0.73 +1.1 78,494 + EX31_RS04800 0.73 +0.5 78,495 - EX31_RS04800 0.73 +0.2 78,495 - EX31_RS04800 0.73 +1.2 78,495 - EX31_RS04800 0.73 +0.9 78,495 - EX31_RS04800 0.73 +1.1 78,495 - EX31_RS04800 0.73 +0.8 78,495 - EX31_RS04800 0.73 +0.4 78,498 + EX31_RS04800 0.73 +0.6 78,622 + +0.5 78,691 + -0.2 78,691 + +1.8 78,691 + +1.5 78,692 - +0.8 78,692 - +0.9 78,692 - +0.3 78,725 + +0.2 78,725 + +0.9 78,725 + +0.1 78,725 + +0.2 78,726 - +0.7 78,726 - -0.1 78,726 - +0.3 78,726 - -0.7 78,726 - -0.3 78,726 - +0.8 78,726 - -0.3 78,726 - +0.7 78,726 - -0.7 78,726 - -0.3 78,766 + -0.3 78,767 - +0.7 78,767 - -0.2 78,767 - +0.2 78,767 - -0.1 78,767 - +1.6 78,767 - -0.2 78,768 + +1.6 78,768 + -0.3 78,768 + +1.0 78,768 + +0.7 78,768 + -0.2 78,768 + -0.3 78,768 + +0.1 78,768 + -0.2 78,768 + +0.5 78,768 + +0.9 78,768 + +0.6 78,768 + +0.5 78,769 - +1.7 78,769 - -0.0 78,769 - -0.4 78,769 - +0.5 78,769 - +0.3 78,769 - -0.9 78,769 - +0.3 78,769 - -0.7 78,769 - -0.1 78,769 - -0.2 78,769 - -2.4 78,769 - -0.7 78,769 - -0.1 78,769 - -0.8 78,769 - -0.8 78,770 + +1.0 78,770 + -0.6 78,770 + +0.5 78,770 + -0.4 78,770 + -0.3 78,770 + -0.5 78,770 + -0.1 78,770 + -0.3 78,770 + +0.8 78,771 - -1.1 78,771 - +0.3 78,771 - -0.7 78,771 - +0.8 78,771 - +0.0 78,771 - -0.6 78,771 - -0.4 78,771 - +1.3 78,771 - +0.4 78,771 - -0.1 78,813 + +0.2 78,814 - -0.5 78,822 + -0.5 78,823 - +0.4 78,823 - +0.3 78,908 - -0.7 78,931 - +0.1 78,967 + +0.8 78,984 + +1.2 78,984 + +0.3 78,988 + +1.1 79,004 - +0.1 79,040 - +0.4 79,097 - +1.4 79,097 - -0.6 79,139 - +0.0 79,139 - +0.7 79,167 - -0.8 79,239 - -0.1 79,339 + EX31_RS04805 0.11 -0.3 79,339 + EX31_RS04805 0.11 +0.3 79,419 + EX31_RS04805 0.26 +0.3 79,419 + EX31_RS04805 0.26 +1.1 79,419 + EX31_RS04805 0.26 -1.0 79,421 + EX31_RS04805 0.26 -1.1 79,421 + EX31_RS04805 0.26 +0.5 79,421 + EX31_RS04805 0.26 -0.6 79,421 + EX31_RS04805 0.26 +1.0 79,436 - EX31_RS04805 0.29 -0.4 79,489 - EX31_RS04805 0.38 -0.3 79,489 - EX31_RS04805 0.38 +0.5 79,503 + EX31_RS04805 0.41 +0.7 79,527 + EX31_RS04805 0.45 -0.4 79,528 - EX31_RS04805 0.45 +0.8 79,533 + EX31_RS04805 0.46 +0.7 79,533 + EX31_RS04805 0.46 -0.5 79,534 - EX31_RS04805 0.46 -0.2 79,534 - EX31_RS04805 0.46 -0.5 79,534 - EX31_RS04805 0.46 -0.1 79,566 + EX31_RS04805 0.52 +0.3 79,566 + EX31_RS04805 0.52 +0.3 79,566 + EX31_RS04805 0.52 -0.6 79,567 - EX31_RS04805 0.52 +0.7 79,578 + EX31_RS04805 0.54 +0.2 79,578 + EX31_RS04805 0.54 +1.9 79,609 + EX31_RS04805 0.60 -0.1 79,610 - EX31_RS04805 0.60 +0.5 79,610 - EX31_RS04805 0.60 -0.0 79,722 + EX31_RS04805 0.81 +0.5 79,744 + EX31_RS04805 0.85 +0.4 79,745 - EX31_RS04805 0.85 +1.3 79,747 + EX31_RS04805 0.85 +0.3 79,747 + EX31_RS04805 0.85 +0.9 79,747 + EX31_RS04805 0.85 -1.0 79,748 - EX31_RS04805 0.85 -1.1 79,759 - EX31_RS04805 0.87 -0.4 79,819 + +0.1 79,825 + +0.5 79,825 + +0.3 79,826 - -0.3 79,829 + +0.3 79,829 + -1.2 79,829 + -0.2 79,830 - +0.2 79,878 + -0.5 79,878 + +0.3 79,903 + +0.3 79,905 + -0.7 79,906 - +0.2 79,939 - +0.2 79,968 + +0.0 79,970 + +0.6 79,971 - -0.7 79,971 - -0.3 79,984 - +0.6 79,995 - -1.3 80,038 + EX31_RS04810 0.15 +0.1 80,152 - EX31_RS04810 0.32 -0.1 80,152 - EX31_RS04810 0.32 +0.5 80,212 + EX31_RS04810 0.41 -0.8 80,254 + EX31_RS04810 0.47 -0.2 80,256 + EX31_RS04810 0.47 -0.8 80,256 + EX31_RS04810 0.47 +1.2 80,257 - EX31_RS04810 0.47 -0.2 80,307 + EX31_RS04810 0.54 +0.9 80,307 + EX31_RS04810 0.54 +1.1 80,308 - EX31_RS04810 0.55 +0.3 80,323 - EX31_RS04810 0.57 +1.0 80,406 + EX31_RS04810 0.69 +0.4 80,406 + EX31_RS04810 0.69 +0.5 80,440 + EX31_RS04810 0.74 -0.2 80,573 + -0.3 80,573 + -1.0 80,574 - +0.3 80,574 - -2.0 80,582 - -0.5 80,603 - +1.0 80,617 + -1.9 80,642 + +0.8 80,642 + +0.5 80,642 + -0.1 80,642 + -0.1 80,643 - -0.4 80,643 - +0.1 80,664 + +0.2 80,665 - +1.0 80,691 + +0.3 80,692 - +0.4 80,692 - +1.0 80,739 + +0.6 80,740 - -0.9 80,766 - -0.2
Or see this region's nucleotide sequence