Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS02430 and EX31_RS02435 overlap by 4 nucleotides EX31_RS02435 and EX31_RS02440 are separated by 10 nucleotides EX31_RS02440 and EX31_RS02445 are separated by 0 nucleotides
EX31_RS02430: EX31_RS02430 - 3-oxoacyl-ACP synthase, at 515,939 to 516,961
_RS02430
EX31_RS02435: EX31_RS02435 - acyl--CoA ligase, at 516,958 to 518,538
_RS02435
EX31_RS02440: EX31_RS02440 - hypothetical protein, at 518,549 to 518,803
_RS02440
EX31_RS02445: EX31_RS02445 - AMP-binding protein, at 518,804 to 520,357
_RS02445
Position (kb) 516
517
518
519 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 515.967 kb on + strand at 515.968 kb on - strand at 515.968 kb on - strand at 516.053 kb on - strand, within EX31_RS02430 at 516.147 kb on + strand, within EX31_RS02430 at 516.147 kb on + strand, within EX31_RS02430 at 516.147 kb on + strand, within EX31_RS02430 at 516.148 kb on - strand, within EX31_RS02430 at 516.164 kb on + strand, within EX31_RS02430 at 516.231 kb on + strand, within EX31_RS02430 at 516.232 kb on - strand, within EX31_RS02430 at 516.458 kb on + strand, within EX31_RS02430 at 516.458 kb on + strand, within EX31_RS02430 at 516.458 kb on + strand, within EX31_RS02430 at 516.458 kb on + strand, within EX31_RS02430 at 516.458 kb on + strand, within EX31_RS02430 at 516.458 kb on + strand, within EX31_RS02430 at 516.458 kb on + strand, within EX31_RS02430 at 516.459 kb on - strand, within EX31_RS02430 at 516.459 kb on - strand, within EX31_RS02430 at 516.459 kb on - strand, within EX31_RS02430 at 516.459 kb on - strand, within EX31_RS02430 at 516.459 kb on - strand, within EX31_RS02430 at 516.549 kb on + strand, within EX31_RS02430 at 516.617 kb on + strand, within EX31_RS02430 at 516.777 kb on + strand, within EX31_RS02430 at 516.778 kb on - strand, within EX31_RS02430 at 516.975 kb on - strand at 516.975 kb on - strand at 517.046 kb on + strand at 517.047 kb on - strand at 517.110 kb on + strand at 517.183 kb on + strand, within EX31_RS02435 at 517.391 kb on + strand, within EX31_RS02435 at 517.392 kb on - strand, within EX31_RS02435 at 517.471 kb on + strand, within EX31_RS02435 at 517.471 kb on + strand, within EX31_RS02435 at 517.525 kb on - strand, within EX31_RS02435 at 517.525 kb on - strand, within EX31_RS02435 at 517.525 kb on - strand, within EX31_RS02435 at 517.525 kb on - strand, within EX31_RS02435 at 517.525 kb on - strand, within EX31_RS02435 at 517.555 kb on + strand, within EX31_RS02435 at 517.555 kb on + strand, within EX31_RS02435 at 517.556 kb on - strand, within EX31_RS02435 at 517.556 kb on - strand, within EX31_RS02435 at 517.801 kb on - strand, within EX31_RS02435 at 517.813 kb on - strand, within EX31_RS02435 at 517.884 kb on + strand, within EX31_RS02435 at 517.888 kb on + strand, within EX31_RS02435 at 517.888 kb on + strand, within EX31_RS02435 at 517.888 kb on + strand, within EX31_RS02435 at 517.889 kb on - strand, within EX31_RS02435 at 517.947 kb on + strand, within EX31_RS02435 at 517.947 kb on + strand, within EX31_RS02435 at 517.947 kb on + strand, within EX31_RS02435 at 517.948 kb on - strand, within EX31_RS02435 at 517.948 kb on - strand, within EX31_RS02435 at 517.948 kb on - strand, within EX31_RS02435 at 518.106 kb on - strand, within EX31_RS02435 at 518.106 kb on - strand, within EX31_RS02435 at 518.140 kb on + strand, within EX31_RS02435 at 518.140 kb on + strand, within EX31_RS02435 at 518.140 kb on + strand, within EX31_RS02435 at 518.140 kb on + strand, within EX31_RS02435 at 518.140 kb on + strand, within EX31_RS02435 at 518.140 kb on + strand, within EX31_RS02435 at 518.140 kb on + strand, within EX31_RS02435 at 518.141 kb on - strand, within EX31_RS02435 at 518.151 kb on + strand, within EX31_RS02435 at 518.151 kb on + strand, within EX31_RS02435 at 518.151 kb on + strand, within EX31_RS02435 at 518.152 kb on - strand, within EX31_RS02435 at 518.152 kb on - strand, within EX31_RS02435 at 518.152 kb on - strand, within EX31_RS02435 at 518.314 kb on + strand, within EX31_RS02435 at 518.314 kb on + strand, within EX31_RS02435 at 518.404 kb on + strand at 518.404 kb on + strand at 518.404 kb on + strand at 518.452 kb on - strand at 518.644 kb on - strand, within EX31_RS02440 at 518.644 kb on - strand, within EX31_RS02440 at 518.663 kb on + strand, within EX31_RS02440 at 518.663 kb on + strand, within EX31_RS02440 at 518.663 kb on + strand, within EX31_RS02440 at 518.663 kb on + strand, within EX31_RS02440 at 518.663 kb on + strand, within EX31_RS02440 at 518.663 kb on + strand, within EX31_RS02440 at 518.663 kb on + strand, within EX31_RS02440 at 518.663 kb on + strand, within EX31_RS02440 at 518.663 kb on + strand, within EX31_RS02440 at 518.664 kb on - strand, within EX31_RS02440 at 518.664 kb on - strand, within EX31_RS02440 at 518.664 kb on - strand, within EX31_RS02440 at 518.664 kb on - strand, within EX31_RS02440 at 518.664 kb on - strand, within EX31_RS02440 at 518.664 kb on - strand, within EX31_RS02440 at 518.664 kb on - strand, within EX31_RS02440 at 518.677 kb on + strand, within EX31_RS02440 at 518.678 kb on - strand, within EX31_RS02440 at 518.678 kb on - strand, within EX31_RS02440 at 518.678 kb on - strand, within EX31_RS02440 at 518.678 kb on - strand, within EX31_RS02440 at 518.678 kb on - strand, within EX31_RS02440 at 518.678 kb on - strand, within EX31_RS02440 at 518.878 kb on + strand at 518.879 kb on - strand at 518.971 kb on - strand, within EX31_RS02445 at 518.987 kb on + strand, within EX31_RS02445 at 518.995 kb on + strand, within EX31_RS02445 at 518.996 kb on - strand, within EX31_RS02445 at 518.996 kb on - strand, within EX31_RS02445 at 518.996 kb on - strand, within EX31_RS02445 at 518.996 kb on - strand, within EX31_RS02445 at 519.278 kb on + strand, within EX31_RS02445 at 519.279 kb on - strand, within EX31_RS02445 at 519.341 kb on - strand, within EX31_RS02445 at 519.429 kb on + strand, within EX31_RS02445
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 515,967 + +1.0 515,968 - -0.5 515,968 - -1.0 516,053 - EX31_RS02430 0.11 +0.2 516,147 + EX31_RS02430 0.20 +0.0 516,147 + EX31_RS02430 0.20 -1.3 516,147 + EX31_RS02430 0.20 -0.6 516,148 - EX31_RS02430 0.20 +0.3 516,164 + EX31_RS02430 0.22 -0.5 516,231 + EX31_RS02430 0.29 -0.6 516,232 - EX31_RS02430 0.29 -0.2 516,458 + EX31_RS02430 0.51 -0.3 516,458 + EX31_RS02430 0.51 -2.2 516,458 + EX31_RS02430 0.51 +0.0 516,458 + EX31_RS02430 0.51 -2.5 516,458 + EX31_RS02430 0.51 -1.7 516,458 + EX31_RS02430 0.51 -0.3 516,458 + EX31_RS02430 0.51 -0.8 516,459 - EX31_RS02430 0.51 +1.1 516,459 - EX31_RS02430 0.51 -0.3 516,459 - EX31_RS02430 0.51 +0.3 516,459 - EX31_RS02430 0.51 +2.0 516,459 - EX31_RS02430 0.51 -3.0 516,549 + EX31_RS02430 0.60 -0.2 516,617 + EX31_RS02430 0.66 -0.9 516,777 + EX31_RS02430 0.82 -3.0 516,778 - EX31_RS02430 0.82 +0.4 516,975 - +0.5 516,975 - -1.8 517,046 + +0.6 517,047 - +0.4 517,110 + +1.1 517,183 + EX31_RS02435 0.14 +0.2 517,391 + EX31_RS02435 0.27 +0.3 517,392 - EX31_RS02435 0.27 +0.7 517,471 + EX31_RS02435 0.32 +1.3 517,471 + EX31_RS02435 0.32 +1.1 517,525 - EX31_RS02435 0.36 -0.1 517,525 - EX31_RS02435 0.36 -0.7 517,525 - EX31_RS02435 0.36 -0.4 517,525 - EX31_RS02435 0.36 -1.9 517,525 - EX31_RS02435 0.36 +0.6 517,555 + EX31_RS02435 0.38 -0.4 517,555 + EX31_RS02435 0.38 +0.6 517,556 - EX31_RS02435 0.38 +0.3 517,556 - EX31_RS02435 0.38 -1.6 517,801 - EX31_RS02435 0.53 -0.2 517,813 - EX31_RS02435 0.54 -0.1 517,884 + EX31_RS02435 0.59 -0.6 517,888 + EX31_RS02435 0.59 -0.5 517,888 + EX31_RS02435 0.59 -1.0 517,888 + EX31_RS02435 0.59 -0.1 517,889 - EX31_RS02435 0.59 -0.3 517,947 + EX31_RS02435 0.63 +0.3 517,947 + EX31_RS02435 0.63 -0.5 517,947 + EX31_RS02435 0.63 +0.4 517,948 - EX31_RS02435 0.63 +0.2 517,948 - EX31_RS02435 0.63 -0.1 517,948 - EX31_RS02435 0.63 +0.2 518,106 - EX31_RS02435 0.73 +0.6 518,106 - EX31_RS02435 0.73 +1.0 518,140 + EX31_RS02435 0.75 +1.3 518,140 + EX31_RS02435 0.75 +0.6 518,140 + EX31_RS02435 0.75 +0.8 518,140 + EX31_RS02435 0.75 -0.2 518,140 + EX31_RS02435 0.75 -1.0 518,140 + EX31_RS02435 0.75 +0.4 518,140 + EX31_RS02435 0.75 +0.6 518,141 - EX31_RS02435 0.75 +0.1 518,151 + EX31_RS02435 0.75 -1.1 518,151 + EX31_RS02435 0.75 +0.0 518,151 + EX31_RS02435 0.75 -2.1 518,152 - EX31_RS02435 0.76 -1.9 518,152 - EX31_RS02435 0.76 -0.6 518,152 - EX31_RS02435 0.76 +0.5 518,314 + EX31_RS02435 0.86 +1.2 518,314 + EX31_RS02435 0.86 +0.1 518,404 + +0.1 518,404 + +0.7 518,404 + +0.1 518,452 - -0.2 518,644 - EX31_RS02440 0.37 -1.1 518,644 - EX31_RS02440 0.37 -0.4 518,663 + EX31_RS02440 0.45 -0.4 518,663 + EX31_RS02440 0.45 +0.2 518,663 + EX31_RS02440 0.45 +0.7 518,663 + EX31_RS02440 0.45 -0.3 518,663 + EX31_RS02440 0.45 -0.2 518,663 + EX31_RS02440 0.45 -0.4 518,663 + EX31_RS02440 0.45 +1.9 518,663 + EX31_RS02440 0.45 -0.0 518,663 + EX31_RS02440 0.45 +0.2 518,664 - EX31_RS02440 0.45 +0.3 518,664 - EX31_RS02440 0.45 -1.5 518,664 - EX31_RS02440 0.45 +0.8 518,664 - EX31_RS02440 0.45 -0.4 518,664 - EX31_RS02440 0.45 -1.2 518,664 - EX31_RS02440 0.45 +0.0 518,664 - EX31_RS02440 0.45 -1.1 518,677 + EX31_RS02440 0.50 -0.1 518,678 - EX31_RS02440 0.51 +0.4 518,678 - EX31_RS02440 0.51 -1.8 518,678 - EX31_RS02440 0.51 -1.4 518,678 - EX31_RS02440 0.51 +0.2 518,678 - EX31_RS02440 0.51 -0.2 518,678 - EX31_RS02440 0.51 -2.4 518,878 + +0.3 518,879 - +0.9 518,971 - EX31_RS02445 0.11 -2.2 518,987 + EX31_RS02445 0.12 -0.4 518,995 + EX31_RS02445 0.12 -1.0 518,996 - EX31_RS02445 0.12 -0.2 518,996 - EX31_RS02445 0.12 +0.8 518,996 - EX31_RS02445 0.12 +0.8 518,996 - EX31_RS02445 0.12 -0.6 519,278 + EX31_RS02445 0.31 -1.9 519,279 - EX31_RS02445 0.31 -0.6 519,341 - EX31_RS02445 0.35 +0.3 519,429 + EX31_RS02445 0.40 -1.9
Or see this region's nucleotide sequence