Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS02305 and EX31_RS02310 are separated by 56 nucleotides EX31_RS02310 and EX31_RS02315 overlap by 4 nucleotides
EX31_RS02305: EX31_RS02305 - cytochrome c, at 498,448 to 499,728
_RS02305
EX31_RS02310: EX31_RS02310 - hypothetical protein, at 499,785 to 500,174
_RS02310
EX31_RS02315: EX31_RS02315 - MFS transporter, at 500,171 to 501,559
_RS02315
Position (kb) 499
500
501 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 498.808 kb on + strand, within EX31_RS02305 at 498.845 kb on - strand, within EX31_RS02305 at 498.851 kb on - strand, within EX31_RS02305 at 498.856 kb on - strand, within EX31_RS02305 at 499.016 kb on - strand, within EX31_RS02305 at 499.054 kb on - strand, within EX31_RS02305 at 499.193 kb on - strand, within EX31_RS02305 at 499.303 kb on + strand, within EX31_RS02305 at 499.303 kb on + strand, within EX31_RS02305 at 499.303 kb on + strand, within EX31_RS02305 at 499.303 kb on + strand, within EX31_RS02305 at 499.304 kb on - strand, within EX31_RS02305 at 499.304 kb on - strand, within EX31_RS02305 at 499.304 kb on - strand, within EX31_RS02305 at 499.425 kb on + strand, within EX31_RS02305 at 499.648 kb on - strand at 499.727 kb on - strand at 499.727 kb on - strand at 499.849 kb on - strand, within EX31_RS02310 at 499.849 kb on - strand, within EX31_RS02310 at 500.134 kb on - strand, within EX31_RS02310 at 500.199 kb on - strand at 500.199 kb on - strand at 500.215 kb on + strand at 500.258 kb on - strand at 500.426 kb on - strand, within EX31_RS02315 at 500.426 kb on - strand, within EX31_RS02315 at 500.426 kb on - strand, within EX31_RS02315 at 500.426 kb on - strand, within EX31_RS02315 at 500.430 kb on - strand, within EX31_RS02315 at 500.430 kb on - strand, within EX31_RS02315 at 500.489 kb on - strand, within EX31_RS02315 at 500.489 kb on - strand, within EX31_RS02315 at 500.585 kb on + strand, within EX31_RS02315 at 500.586 kb on - strand, within EX31_RS02315 at 500.586 kb on - strand, within EX31_RS02315 at 500.712 kb on + strand, within EX31_RS02315 at 500.755 kb on + strand, within EX31_RS02315 at 500.755 kb on + strand, within EX31_RS02315 at 500.755 kb on + strand, within EX31_RS02315 at 500.756 kb on - strand, within EX31_RS02315 at 500.756 kb on - strand, within EX31_RS02315 at 500.764 kb on - strand, within EX31_RS02315 at 500.764 kb on - strand, within EX31_RS02315 at 500.799 kb on - strand, within EX31_RS02315 at 500.799 kb on - strand, within EX31_RS02315 at 500.846 kb on + strand, within EX31_RS02315
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 498,808 + EX31_RS02305 0.28 -0.6 498,845 - EX31_RS02305 0.31 +0.1 498,851 - EX31_RS02305 0.31 +0.1 498,856 - EX31_RS02305 0.32 +1.0 499,016 - EX31_RS02305 0.44 +1.0 499,054 - EX31_RS02305 0.47 -1.5 499,193 - EX31_RS02305 0.58 -0.3 499,303 + EX31_RS02305 0.67 -2.5 499,303 + EX31_RS02305 0.67 -0.6 499,303 + EX31_RS02305 0.67 +0.1 499,303 + EX31_RS02305 0.67 +1.0 499,304 - EX31_RS02305 0.67 +1.1 499,304 - EX31_RS02305 0.67 +0.1 499,304 - EX31_RS02305 0.67 +1.1 499,425 + EX31_RS02305 0.76 -1.0 499,648 - +0.1 499,727 - -1.1 499,727 - -0.7 499,849 - EX31_RS02310 0.16 +0.6 499,849 - EX31_RS02310 0.16 -0.6 500,134 - EX31_RS02310 0.89 -3.0 500,199 - -0.8 500,199 - +0.4 500,215 + -0.8 500,258 - -0.6 500,426 - EX31_RS02315 0.18 -1.8 500,426 - EX31_RS02315 0.18 +0.0 500,426 - EX31_RS02315 0.18 -0.0 500,426 - EX31_RS02315 0.18 +0.8 500,430 - EX31_RS02315 0.19 -0.5 500,430 - EX31_RS02315 0.19 -1.2 500,489 - EX31_RS02315 0.23 -1.2 500,489 - EX31_RS02315 0.23 +0.1 500,585 + EX31_RS02315 0.30 -0.5 500,586 - EX31_RS02315 0.30 -0.6 500,586 - EX31_RS02315 0.30 -1.2 500,712 + EX31_RS02315 0.39 -0.0 500,755 + EX31_RS02315 0.42 +0.2 500,755 + EX31_RS02315 0.42 -0.9 500,755 + EX31_RS02315 0.42 -0.8 500,756 - EX31_RS02315 0.42 -0.6 500,756 - EX31_RS02315 0.42 -1.9 500,764 - EX31_RS02315 0.43 -1.2 500,764 - EX31_RS02315 0.43 -0.9 500,799 - EX31_RS02315 0.45 -1.4 500,799 - EX31_RS02315 0.45 -0.6 500,846 + EX31_RS02315 0.49 +1.2
Or see this region's nucleotide sequence