Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS01470 and EX31_RS01475 are separated by 67 nucleotides EX31_RS01475 and EX31_RS01480 are separated by 68 nucleotides EX31_RS01480 and EX31_RS01485 are separated by 396 nucleotides
EX31_RS01470: EX31_RS01470 - cupin domain-containing protein, at 331,677 to 331,997
_RS01470
EX31_RS01475: EX31_RS01475 - RpiB/LacA/LacB family sugar-phosphate isomerase, at 332,065 to 332,703
_RS01475
EX31_RS01480: EX31_RS01480 - 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD, at 332,772 to 333,533
_RS01480
EX31_RS01485: EX31_RS01485 - helix-turn-helix domain-containing protein, at 333,930 to 334,286
_RS01485
Position (kb) 332
333
334 Strain fitness (log2 ratio) -2
-1
0
1
2 at 331.777 kb on - strand, within EX31_RS01470 at 331.833 kb on + strand, within EX31_RS01470 at 331.833 kb on + strand, within EX31_RS01470 at 331.833 kb on + strand, within EX31_RS01470 at 331.833 kb on + strand, within EX31_RS01470 at 331.833 kb on + strand, within EX31_RS01470 at 331.833 kb on + strand, within EX31_RS01470 at 331.833 kb on + strand, within EX31_RS01470 at 331.833 kb on + strand, within EX31_RS01470 at 331.833 kb on + strand, within EX31_RS01470 at 331.833 kb on + strand, within EX31_RS01470 at 331.833 kb on + strand, within EX31_RS01470 at 331.833 kb on + strand, within EX31_RS01470 at 331.833 kb on + strand, within EX31_RS01470 at 331.833 kb on + strand, within EX31_RS01470 at 331.833 kb on + strand, within EX31_RS01470 at 331.833 kb on + strand, within EX31_RS01470 at 331.833 kb on + strand, within EX31_RS01470 at 331.834 kb on - strand, within EX31_RS01470 at 331.834 kb on - strand, within EX31_RS01470 at 331.834 kb on - strand, within EX31_RS01470 at 331.834 kb on - strand, within EX31_RS01470 at 331.834 kb on - strand, within EX31_RS01470 at 331.854 kb on - strand, within EX31_RS01470 at 331.886 kb on - strand, within EX31_RS01470 at 331.886 kb on - strand, within EX31_RS01470 at 331.905 kb on + strand, within EX31_RS01470 at 331.905 kb on + strand, within EX31_RS01470 at 331.906 kb on - strand, within EX31_RS01470 at 331.917 kb on + strand, within EX31_RS01470 at 331.917 kb on + strand, within EX31_RS01470 at 331.917 kb on + strand, within EX31_RS01470 at 331.918 kb on - strand, within EX31_RS01470 at 331.918 kb on - strand, within EX31_RS01470 at 331.996 kb on - strand at 332.011 kb on + strand at 332.011 kb on + strand at 332.199 kb on - strand, within EX31_RS01475 at 332.210 kb on - strand, within EX31_RS01475 at 332.210 kb on - strand, within EX31_RS01475 at 332.427 kb on + strand, within EX31_RS01475 at 332.427 kb on + strand, within EX31_RS01475 at 332.427 kb on + strand, within EX31_RS01475 at 332.428 kb on - strand, within EX31_RS01475 at 332.457 kb on + strand, within EX31_RS01475 at 332.458 kb on - strand, within EX31_RS01475 at 332.521 kb on - strand, within EX31_RS01475 at 332.561 kb on + strand, within EX31_RS01475 at 332.561 kb on + strand, within EX31_RS01475 at 332.561 kb on + strand, within EX31_RS01475 at 332.561 kb on + strand, within EX31_RS01475 at 332.561 kb on + strand, within EX31_RS01475 at 332.561 kb on + strand, within EX31_RS01475 at 332.562 kb on - strand, within EX31_RS01475 at 332.562 kb on - strand, within EX31_RS01475 at 332.562 kb on - strand, within EX31_RS01475 at 332.562 kb on - strand, within EX31_RS01475 at 332.562 kb on - strand, within EX31_RS01475 at 332.562 kb on - strand, within EX31_RS01475 at 332.751 kb on - strand at 332.761 kb on - strand at 332.810 kb on - strand at 332.820 kb on - strand at 332.820 kb on - strand at 332.820 kb on - strand at 332.820 kb on - strand at 332.820 kb on - strand at 332.821 kb on + strand at 332.822 kb on - strand at 332.822 kb on - strand at 332.822 kb on - strand at 332.898 kb on - strand, within EX31_RS01480 at 332.963 kb on + strand, within EX31_RS01480 at 332.964 kb on - strand, within EX31_RS01480 at 332.965 kb on + strand, within EX31_RS01480 at 332.966 kb on - strand, within EX31_RS01480 at 332.966 kb on - strand, within EX31_RS01480 at 332.966 kb on - strand, within EX31_RS01480 at 332.966 kb on - strand, within EX31_RS01480 at 333.060 kb on - strand, within EX31_RS01480 at 333.061 kb on + strand, within EX31_RS01480 at 333.062 kb on - strand, within EX31_RS01480 at 333.468 kb on + strand at 333.545 kb on + strand at 333.551 kb on + strand at 333.551 kb on + strand at 333.551 kb on + strand at 333.551 kb on + strand at 333.551 kb on + strand at 333.551 kb on + strand at 333.551 kb on + strand at 333.551 kb on + strand at 333.552 kb on - strand at 333.552 kb on - strand at 333.552 kb on - strand at 333.552 kb on - strand at 333.584 kb on + strand at 333.584 kb on + strand at 333.584 kb on + strand at 333.584 kb on + strand at 333.585 kb on - strand at 333.585 kb on - strand at 333.620 kb on - strand at 333.636 kb on + strand at 333.761 kb on + strand at 333.837 kb on + strand at 333.915 kb on - strand at 334.071 kb on - strand, within EX31_RS01485 at 334.071 kb on - strand, within EX31_RS01485 at 334.161 kb on - strand, within EX31_RS01485 at 334.166 kb on + strand, within EX31_RS01485 at 334.166 kb on + strand, within EX31_RS01485 at 334.167 kb on - strand, within EX31_RS01485 at 334.167 kb on - strand, within EX31_RS01485 at 334.214 kb on + strand, within EX31_RS01485 at 334.425 kb on - strand at 334.425 kb on - strand at 334.425 kb on - strand at 334.435 kb on + strand at 334.441 kb on - strand at 334.489 kb on + strand at 334.490 kb on - strand at 334.490 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 331,777 - EX31_RS01470 0.31 -0.8 331,833 + EX31_RS01470 0.49 +0.7 331,833 + EX31_RS01470 0.49 -1.9 331,833 + EX31_RS01470 0.49 -0.2 331,833 + EX31_RS01470 0.49 -0.3 331,833 + EX31_RS01470 0.49 +0.3 331,833 + EX31_RS01470 0.49 +1.2 331,833 + EX31_RS01470 0.49 -0.1 331,833 + EX31_RS01470 0.49 +2.1 331,833 + EX31_RS01470 0.49 +0.6 331,833 + EX31_RS01470 0.49 +0.3 331,833 + EX31_RS01470 0.49 +1.0 331,833 + EX31_RS01470 0.49 -0.5 331,833 + EX31_RS01470 0.49 -0.0 331,833 + EX31_RS01470 0.49 +0.9 331,833 + EX31_RS01470 0.49 -0.1 331,833 + EX31_RS01470 0.49 +0.6 331,833 + EX31_RS01470 0.49 -0.9 331,834 - EX31_RS01470 0.49 -0.0 331,834 - EX31_RS01470 0.49 +1.3 331,834 - EX31_RS01470 0.49 +1.3 331,834 - EX31_RS01470 0.49 -0.2 331,834 - EX31_RS01470 0.49 +0.0 331,854 - EX31_RS01470 0.55 -0.5 331,886 - EX31_RS01470 0.65 -1.7 331,886 - EX31_RS01470 0.65 +0.4 331,905 + EX31_RS01470 0.71 -2.1 331,905 + EX31_RS01470 0.71 -1.4 331,906 - EX31_RS01470 0.71 -2.0 331,917 + EX31_RS01470 0.75 -0.2 331,917 + EX31_RS01470 0.75 -0.3 331,917 + EX31_RS01470 0.75 +1.5 331,918 - EX31_RS01470 0.75 +1.5 331,918 - EX31_RS01470 0.75 -0.7 331,996 - -0.2 332,011 + -0.2 332,011 + +1.3 332,199 - EX31_RS01475 0.21 +0.9 332,210 - EX31_RS01475 0.23 +0.8 332,210 - EX31_RS01475 0.23 +0.9 332,427 + EX31_RS01475 0.57 +0.6 332,427 + EX31_RS01475 0.57 -0.7 332,427 + EX31_RS01475 0.57 -0.3 332,428 - EX31_RS01475 0.57 +0.4 332,457 + EX31_RS01475 0.61 -2.0 332,458 - EX31_RS01475 0.62 +0.9 332,521 - EX31_RS01475 0.71 -1.9 332,561 + EX31_RS01475 0.78 +1.2 332,561 + EX31_RS01475 0.78 -1.4 332,561 + EX31_RS01475 0.78 +0.1 332,561 + EX31_RS01475 0.78 -0.1 332,561 + EX31_RS01475 0.78 -0.1 332,561 + EX31_RS01475 0.78 +0.3 332,562 - EX31_RS01475 0.78 -0.2 332,562 - EX31_RS01475 0.78 +0.5 332,562 - EX31_RS01475 0.78 +0.0 332,562 - EX31_RS01475 0.78 +0.1 332,562 - EX31_RS01475 0.78 -0.6 332,562 - EX31_RS01475 0.78 +0.2 332,751 - -0.5 332,761 - -1.2 332,810 - -2.4 332,820 - -1.5 332,820 - +0.6 332,820 - -0.3 332,820 - +0.9 332,820 - -2.5 332,821 + -0.9 332,822 - -0.2 332,822 - -0.5 332,822 - +0.8 332,898 - EX31_RS01480 0.17 -1.8 332,963 + EX31_RS01480 0.25 +0.9 332,964 - EX31_RS01480 0.25 -1.8 332,965 + EX31_RS01480 0.25 -1.9 332,966 - EX31_RS01480 0.25 -0.5 332,966 - EX31_RS01480 0.25 +0.0 332,966 - EX31_RS01480 0.25 -0.7 332,966 - EX31_RS01480 0.25 -0.6 333,060 - EX31_RS01480 0.38 +0.6 333,061 + EX31_RS01480 0.38 -0.6 333,062 - EX31_RS01480 0.38 -0.5 333,468 + +0.7 333,545 + +1.4 333,551 + -1.0 333,551 + -1.0 333,551 + -0.0 333,551 + -0.9 333,551 + -0.7 333,551 + +1.0 333,551 + -0.9 333,551 + -0.5 333,552 - -0.3 333,552 - +0.6 333,552 - +0.6 333,552 - -0.0 333,584 + +1.9 333,584 + +1.1 333,584 + +0.6 333,584 + +0.1 333,585 - +0.5 333,585 - +0.8 333,620 - -0.7 333,636 + +0.8 333,761 + +0.1 333,837 + -0.1 333,915 - +0.1 334,071 - EX31_RS01485 0.39 +2.1 334,071 - EX31_RS01485 0.39 +0.9 334,161 - EX31_RS01485 0.65 -1.9 334,166 + EX31_RS01485 0.66 +0.5 334,166 + EX31_RS01485 0.66 -0.3 334,167 - EX31_RS01485 0.66 +0.0 334,167 - EX31_RS01485 0.66 +0.7 334,214 + EX31_RS01485 0.80 -2.4 334,425 - +0.0 334,425 - -0.3 334,425 - +0.8 334,435 + +0.1 334,441 - +1.3 334,489 + +0.2 334,490 - -0.2 334,490 - -1.5
Or see this region's nucleotide sequence