Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS01255 and EX31_RS01260 are separated by 52 nucleotides EX31_RS01260 and EX31_RS01265 are separated by 202 nucleotides EX31_RS01265 and EX31_RS01270 are separated by 115 nucleotides
EX31_RS01255: EX31_RS01255 - Crp/Fnr family transcriptional regulator, at 280,619 to 281,251
_RS01255
EX31_RS01260: EX31_RS01260 - YebG family protein, at 281,304 to 281,699
_RS01260
EX31_RS01265: EX31_RS01265 - GNAT family N-acetyltransferase, at 281,902 to 282,357
_RS01265
EX31_RS01270: EX31_RS01270 - LysR family transcriptional regulator, at 282,473 to 283,348
_RS01270
Position (kb) 281
282
283 Strain fitness (log2 ratio) -2
-1
0
1 at 280.960 kb on - strand, within EX31_RS01255 at 281.007 kb on - strand, within EX31_RS01255 at 281.007 kb on - strand, within EX31_RS01255 at 281.120 kb on + strand, within EX31_RS01255 at 281.192 kb on + strand at 281.192 kb on + strand at 281.212 kb on + strand at 281.212 kb on + strand at 281.317 kb on - strand at 281.317 kb on - strand at 281.489 kb on + strand, within EX31_RS01260 at 281.572 kb on - strand, within EX31_RS01260 at 281.617 kb on + strand, within EX31_RS01260 at 281.714 kb on - strand at 281.754 kb on - strand at 281.804 kb on + strand at 281.805 kb on - strand at 281.805 kb on - strand at 281.805 kb on - strand at 281.805 kb on - strand at 281.816 kb on + strand at 281.817 kb on - strand at 281.817 kb on - strand at 281.817 kb on - strand at 281.817 kb on - strand at 281.817 kb on - strand at 281.935 kb on + strand at 281.935 kb on + strand at 281.935 kb on + strand at 281.935 kb on + strand at 281.936 kb on - strand at 281.936 kb on - strand at 282.145 kb on + strand, within EX31_RS01265 at 282.145 kb on + strand, within EX31_RS01265 at 282.146 kb on - strand, within EX31_RS01265 at 282.146 kb on - strand, within EX31_RS01265 at 282.146 kb on - strand, within EX31_RS01265 at 282.246 kb on + strand, within EX31_RS01265 at 282.247 kb on - strand, within EX31_RS01265 at 282.247 kb on - strand, within EX31_RS01265 at 282.307 kb on + strand, within EX31_RS01265 at 282.474 kb on + strand at 282.474 kb on + strand at 282.474 kb on + strand at 282.474 kb on + strand at 282.474 kb on + strand at 282.475 kb on - strand at 282.475 kb on - strand at 282.475 kb on - strand at 282.475 kb on - strand at 282.476 kb on + strand at 282.478 kb on + strand at 282.479 kb on - strand at 282.479 kb on - strand at 282.479 kb on - strand at 282.479 kb on - strand at 282.479 kb on - strand at 282.479 kb on - strand at 282.479 kb on - strand at 282.524 kb on - strand at 282.686 kb on - strand, within EX31_RS01270 at 282.686 kb on - strand, within EX31_RS01270 at 282.787 kb on - strand, within EX31_RS01270 at 282.787 kb on - strand, within EX31_RS01270 at 282.787 kb on - strand, within EX31_RS01270 at 282.787 kb on - strand, within EX31_RS01270 at 282.787 kb on - strand, within EX31_RS01270 at 282.787 kb on - strand, within EX31_RS01270 at 282.798 kb on - strand, within EX31_RS01270 at 283.024 kb on + strand, within EX31_RS01270 at 283.115 kb on - strand, within EX31_RS01270 at 283.136 kb on + strand, within EX31_RS01270 at 283.137 kb on - strand, within EX31_RS01270 at 283.296 kb on + strand at 283.297 kb on - strand at 283.356 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 280,960 - EX31_RS01255 0.54 +0.2 281,007 - EX31_RS01255 0.61 -0.9 281,007 - EX31_RS01255 0.61 +0.5 281,120 + EX31_RS01255 0.79 -0.1 281,192 + -0.4 281,192 + -1.0 281,212 + +1.4 281,212 + +0.7 281,317 - +0.4 281,317 - +0.1 281,489 + EX31_RS01260 0.47 +1.0 281,572 - EX31_RS01260 0.68 +1.5 281,617 + EX31_RS01260 0.79 +0.4 281,714 - +1.3 281,754 - +0.8 281,804 + -1.5 281,805 - -1.0 281,805 - +0.5 281,805 - -0.9 281,805 - -0.6 281,816 + -0.2 281,817 - +0.6 281,817 - -0.6 281,817 - +0.4 281,817 - +0.2 281,817 - +0.0 281,935 + -0.4 281,935 + -0.3 281,935 + -0.6 281,935 + -2.3 281,936 - +1.3 281,936 - +1.3 282,145 + EX31_RS01265 0.53 -2.2 282,145 + EX31_RS01265 0.53 -1.0 282,146 - EX31_RS01265 0.54 +0.6 282,146 - EX31_RS01265 0.54 +1.5 282,146 - EX31_RS01265 0.54 -2.1 282,246 + EX31_RS01265 0.75 -0.3 282,247 - EX31_RS01265 0.76 +0.9 282,247 - EX31_RS01265 0.76 -1.9 282,307 + EX31_RS01265 0.89 +0.4 282,474 + +0.2 282,474 + -0.1 282,474 + +1.3 282,474 + -2.0 282,474 + -0.2 282,475 - +0.3 282,475 - -0.0 282,475 - -0.0 282,475 - +0.2 282,476 + +0.5 282,478 + -0.6 282,479 - +0.5 282,479 - +1.6 282,479 - -0.4 282,479 - +1.0 282,479 - +0.8 282,479 - +1.6 282,479 - +0.2 282,524 - -2.0 282,686 - EX31_RS01270 0.24 -0.2 282,686 - EX31_RS01270 0.24 +0.4 282,787 - EX31_RS01270 0.36 +0.6 282,787 - EX31_RS01270 0.36 -0.1 282,787 - EX31_RS01270 0.36 +0.4 282,787 - EX31_RS01270 0.36 +0.4 282,787 - EX31_RS01270 0.36 -0.4 282,787 - EX31_RS01270 0.36 +0.5 282,798 - EX31_RS01270 0.37 -0.6 283,024 + EX31_RS01270 0.63 +0.3 283,115 - EX31_RS01270 0.73 +0.1 283,136 + EX31_RS01270 0.76 +1.1 283,137 - EX31_RS01270 0.76 -1.3 283,296 + -1.5 283,297 - +1.1 283,356 - +0.3
Or see this region's nucleotide sequence