Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS01185 and EX31_RS01190 are separated by 239 nucleotides EX31_RS01190 and EX31_RS01195 are separated by 329 nucleotides EX31_RS01195 and EX31_RS01200 are separated by 314 nucleotides EX31_RS01200 and EX31_RS01205 are separated by 205 nucleotides
EX31_RS01185: EX31_RS01185 - two-component system sensor histidine kinase DcuS, at 262,287 to 263,906
_RS01185
EX31_RS01190: EX31_RS01190 - hypothetical protein, at 264,146 to 264,463
_RS01190
EX31_RS01195: EX31_RS01195 - SDR family oxidoreductase, at 264,793 to 265,698
_RS01195
EX31_RS01200: EX31_RS01200 - hypothetical protein, at 266,013 to 266,234
_RS01200
EX31_RS01205: EX31_RS01205 - MurR/RpiR family transcriptional regulator, at 266,440 to 267,348
_RS01205
Position (kb) 264
265
266 Strain fitness (log2 ratio) -2
-1
0
1
2 at 263.795 kb on + strand at 263.795 kb on + strand at 263.796 kb on - strand at 263.832 kb on + strand at 263.833 kb on - strand at 263.925 kb on - strand at 263.925 kb on - strand at 263.944 kb on + strand at 263.985 kb on - strand at 264.029 kb on + strand at 264.029 kb on + strand at 264.029 kb on + strand at 264.040 kb on + strand at 264.041 kb on - strand at 264.053 kb on + strand at 264.053 kb on + strand at 264.095 kb on - strand at 264.156 kb on + strand at 264.157 kb on - strand at 264.161 kb on - strand at 264.229 kb on - strand, within EX31_RS01190 at 264.229 kb on - strand, within EX31_RS01190 at 264.229 kb on - strand, within EX31_RS01190 at 264.337 kb on - strand, within EX31_RS01190 at 264.410 kb on + strand, within EX31_RS01190 at 264.411 kb on - strand, within EX31_RS01190 at 264.442 kb on + strand at 264.442 kb on + strand at 264.463 kb on + strand at 264.463 kb on + strand at 264.491 kb on - strand at 264.526 kb on + strand at 264.526 kb on + strand at 264.526 kb on + strand at 264.526 kb on + strand at 264.526 kb on + strand at 264.658 kb on + strand at 264.658 kb on + strand at 264.658 kb on + strand at 264.658 kb on + strand at 264.658 kb on + strand at 264.658 kb on + strand at 264.658 kb on + strand at 264.659 kb on - strand at 264.659 kb on - strand at 264.659 kb on - strand at 264.659 kb on - strand at 264.678 kb on + strand at 264.679 kb on - strand at 264.720 kb on + strand at 264.727 kb on + strand at 264.727 kb on + strand at 264.728 kb on - strand at 264.728 kb on - strand at 264.728 kb on - strand at 264.728 kb on - strand at 264.728 kb on - strand at 264.728 kb on - strand at 264.728 kb on - strand at 264.752 kb on - strand at 264.764 kb on + strand at 264.781 kb on + strand at 264.792 kb on + strand at 264.792 kb on + strand at 264.934 kb on + strand, within EX31_RS01195 at 265.297 kb on + strand, within EX31_RS01195 at 265.297 kb on + strand, within EX31_RS01195 at 265.298 kb on - strand, within EX31_RS01195 at 265.298 kb on - strand, within EX31_RS01195 at 265.360 kb on - strand, within EX31_RS01195 at 265.362 kb on + strand, within EX31_RS01195 at 265.363 kb on - strand, within EX31_RS01195 at 265.363 kb on - strand, within EX31_RS01195 at 265.363 kb on - strand, within EX31_RS01195 at 265.363 kb on - strand, within EX31_RS01195 at 265.363 kb on - strand, within EX31_RS01195 at 265.363 kb on - strand, within EX31_RS01195 at 265.508 kb on - strand, within EX31_RS01195 at 265.618 kb on + strand at 265.618 kb on + strand at 265.618 kb on + strand at 265.618 kb on + strand at 265.619 kb on - strand at 265.619 kb on - strand at 265.619 kb on - strand at 265.694 kb on + strand at 265.695 kb on - strand at 265.695 kb on - strand at 265.697 kb on - strand at 265.697 kb on - strand at 265.697 kb on - strand at 265.779 kb on + strand at 265.783 kb on + strand at 265.784 kb on - strand at 265.791 kb on + strand at 265.800 kb on - strand at 265.819 kb on + strand at 265.819 kb on + strand at 265.820 kb on - strand at 265.831 kb on - strand at 265.843 kb on + strand at 265.965 kb on - strand at 266.096 kb on - strand, within EX31_RS01200 at 266.151 kb on - strand, within EX31_RS01200 at 266.151 kb on - strand, within EX31_RS01200 at 266.169 kb on + strand, within EX31_RS01200 at 266.169 kb on + strand, within EX31_RS01200 at 266.169 kb on + strand, within EX31_RS01200 at 266.169 kb on + strand, within EX31_RS01200 at 266.169 kb on + strand, within EX31_RS01200 at 266.169 kb on + strand, within EX31_RS01200 at 266.169 kb on + strand, within EX31_RS01200 at 266.169 kb on + strand, within EX31_RS01200 at 266.170 kb on - strand, within EX31_RS01200 at 266.170 kb on - strand, within EX31_RS01200 at 266.170 kb on - strand, within EX31_RS01200 at 266.170 kb on - strand, within EX31_RS01200 at 266.170 kb on - strand, within EX31_RS01200 at 266.170 kb on - strand, within EX31_RS01200 at 266.170 kb on - strand, within EX31_RS01200 at 266.170 kb on - strand, within EX31_RS01200 at 266.170 kb on - strand, within EX31_RS01200 at 266.266 kb on + strand at 266.267 kb on - strand at 266.294 kb on + strand at 266.307 kb on - strand at 266.366 kb on - strand at 266.555 kb on - strand, within EX31_RS01205 at 266.641 kb on - strand, within EX31_RS01205 at 266.697 kb on + strand, within EX31_RS01205 at 266.698 kb on - strand, within EX31_RS01205
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 263,795 + +0.6 263,795 + -0.3 263,796 - -0.5 263,832 + +0.1 263,833 - -0.4 263,925 - -1.2 263,925 - -1.1 263,944 + -0.1 263,985 - +0.3 264,029 + -0.5 264,029 + +2.2 264,029 + -0.5 264,040 + +0.8 264,041 - -1.3 264,053 + -1.9 264,053 + -1.2 264,095 - +1.8 264,156 + -0.5 264,157 - -0.9 264,161 - -1.0 264,229 - EX31_RS01190 0.26 -0.4 264,229 - EX31_RS01190 0.26 +1.4 264,229 - EX31_RS01190 0.26 +0.6 264,337 - EX31_RS01190 0.60 +0.5 264,410 + EX31_RS01190 0.83 +0.4 264,411 - EX31_RS01190 0.83 -0.8 264,442 + -1.0 264,442 + -0.6 264,463 + -1.3 264,463 + -0.6 264,491 - -1.4 264,526 + +0.3 264,526 + -1.8 264,526 + -0.1 264,526 + +1.0 264,526 + +0.2 264,658 + +0.9 264,658 + -0.8 264,658 + -0.1 264,658 + -0.0 264,658 + +0.7 264,658 + -0.3 264,658 + +0.1 264,659 - -0.9 264,659 - +0.7 264,659 - +1.0 264,659 - -0.4 264,678 + +0.3 264,679 - -0.2 264,720 + +0.0 264,727 + -0.9 264,727 + -0.3 264,728 - -0.0 264,728 - +0.7 264,728 - +0.1 264,728 - -1.3 264,728 - -0.4 264,728 - +0.5 264,728 - +0.4 264,752 - -0.1 264,764 + +0.9 264,781 + -0.4 264,792 + -0.2 264,792 + -1.1 264,934 + EX31_RS01195 0.16 -2.0 265,297 + EX31_RS01195 0.56 -0.1 265,297 + EX31_RS01195 0.56 -0.2 265,298 - EX31_RS01195 0.56 -0.7 265,298 - EX31_RS01195 0.56 -2.5 265,360 - EX31_RS01195 0.63 +0.2 265,362 + EX31_RS01195 0.63 +0.1 265,363 - EX31_RS01195 0.63 -1.0 265,363 - EX31_RS01195 0.63 -0.7 265,363 - EX31_RS01195 0.63 +0.1 265,363 - EX31_RS01195 0.63 -0.7 265,363 - EX31_RS01195 0.63 -1.0 265,363 - EX31_RS01195 0.63 -1.0 265,508 - EX31_RS01195 0.79 +1.8 265,618 + -0.1 265,618 + +0.6 265,618 + -1.1 265,618 + -0.1 265,619 - -0.2 265,619 - -0.2 265,619 - -1.3 265,694 + -0.0 265,695 - +0.7 265,695 - +0.5 265,697 - +0.5 265,697 - +0.2 265,697 - -0.7 265,779 + -0.5 265,783 + +2.0 265,784 - -2.4 265,791 + -2.1 265,800 - -1.1 265,819 + +0.9 265,819 + -1.0 265,820 - -0.1 265,831 - +0.5 265,843 + +0.7 265,965 - -0.7 266,096 - EX31_RS01200 0.37 +1.2 266,151 - EX31_RS01200 0.62 -0.4 266,151 - EX31_RS01200 0.62 -0.6 266,169 + EX31_RS01200 0.70 -1.2 266,169 + EX31_RS01200 0.70 -1.4 266,169 + EX31_RS01200 0.70 -0.0 266,169 + EX31_RS01200 0.70 -0.1 266,169 + EX31_RS01200 0.70 +0.7 266,169 + EX31_RS01200 0.70 +1.0 266,169 + EX31_RS01200 0.70 +0.3 266,169 + EX31_RS01200 0.70 -0.8 266,170 - EX31_RS01200 0.71 -0.0 266,170 - EX31_RS01200 0.71 -1.0 266,170 - EX31_RS01200 0.71 +0.1 266,170 - EX31_RS01200 0.71 +1.5 266,170 - EX31_RS01200 0.71 -0.5 266,170 - EX31_RS01200 0.71 +0.2 266,170 - EX31_RS01200 0.71 +1.8 266,170 - EX31_RS01200 0.71 +0.1 266,170 - EX31_RS01200 0.71 -0.7 266,266 + +1.3 266,267 - +0.8 266,294 + -2.3 266,307 - -0.8 266,366 - +0.2 266,555 - EX31_RS01205 0.13 +0.8 266,641 - EX31_RS01205 0.22 -1.1 266,697 + EX31_RS01205 0.28 +0.1 266,698 - EX31_RS01205 0.28 -0.9
Or see this region's nucleotide sequence