Strain Fitness in Rahnella sp. WP5 around EX31_RS00960

Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS00950 and EX31_RS00955 are separated by 29 nucleotidesEX31_RS00955 and EX31_RS00960 are separated by 52 nucleotidesEX31_RS00960 and EX31_RS00965 are separated by 12 nucleotides EX31_RS00950: EX31_RS00950 - type VI secretion system contractile sheath large subunit, at 205,948 to 207,429 _RS00950 EX31_RS00955: EX31_RS00955 - type VI secretion system tube protein Hcp, at 207,459 to 207,950 _RS00955 EX31_RS00960: EX31_RS00960 - hypothetical protein, at 208,003 to 208,419 _RS00960 EX31_RS00965: EX31_RS00965 - type VI secretion system baseplate subunit TssF, at 208,432 to 210,234 _RS00965 Position (kb) 208 209Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 207.112 kb on + strand, within EX31_RS00950at 207.113 kb on - strand, within EX31_RS00950at 207.113 kb on - strand, within EX31_RS00950at 207.114 kb on + strand, within EX31_RS00950at 207.114 kb on + strand, within EX31_RS00950at 207.114 kb on + strand, within EX31_RS00950at 207.114 kb on + strand, within EX31_RS00950at 207.115 kb on - strand, within EX31_RS00950at 207.115 kb on - strand, within EX31_RS00950at 207.229 kb on + strand, within EX31_RS00950at 207.230 kb on - strand, within EX31_RS00950at 207.246 kb on + strand, within EX31_RS00950at 207.251 kb on + strand, within EX31_RS00950at 207.251 kb on + strand, within EX31_RS00950at 207.251 kb on + strand, within EX31_RS00950at 207.251 kb on + strand, within EX31_RS00950at 207.252 kb on - strand, within EX31_RS00950at 207.252 kb on - strand, within EX31_RS00950at 207.347 kb on - strandat 207.350 kb on + strandat 207.427 kb on + strandat 207.427 kb on + strandat 207.431 kb on + strandat 207.432 kb on - strandat 207.435 kb on + strandat 207.435 kb on + strandat 207.436 kb on - strandat 207.456 kb on - strandat 207.508 kb on + strandat 207.508 kb on + strandat 207.509 kb on - strand, within EX31_RS00955at 207.656 kb on + strand, within EX31_RS00955at 207.656 kb on + strand, within EX31_RS00955at 207.657 kb on - strand, within EX31_RS00955at 207.657 kb on - strand, within EX31_RS00955at 207.677 kb on + strand, within EX31_RS00955at 207.677 kb on + strand, within EX31_RS00955at 207.768 kb on + strand, within EX31_RS00955at 207.768 kb on + strand, within EX31_RS00955at 207.847 kb on + strand, within EX31_RS00955at 207.848 kb on - strand, within EX31_RS00955at 207.872 kb on + strand, within EX31_RS00955at 207.941 kb on + strandat 207.988 kb on + strandat 207.999 kb on - strandat 208.100 kb on + strand, within EX31_RS00960at 208.173 kb on + strand, within EX31_RS00960at 208.173 kb on + strand, within EX31_RS00960at 208.173 kb on + strand, within EX31_RS00960at 208.207 kb on - strand, within EX31_RS00960at 208.233 kb on + strand, within EX31_RS00960at 208.259 kb on + strand, within EX31_RS00960at 208.259 kb on + strand, within EX31_RS00960at 208.338 kb on + strand, within EX31_RS00960at 208.431 kb on - strandat 208.456 kb on + strandat 208.551 kb on + strandat 208.582 kb on - strandat 208.635 kb on + strand, within EX31_RS00965at 208.659 kb on - strand, within EX31_RS00965at 208.712 kb on + strand, within EX31_RS00965at 208.781 kb on + strand, within EX31_RS00965at 208.781 kb on + strand, within EX31_RS00965at 208.781 kb on + strand, within EX31_RS00965at 208.781 kb on + strand, within EX31_RS00965at 208.782 kb on - strand, within EX31_RS00965at 208.782 kb on - strand, within EX31_RS00965at 208.782 kb on - strand, within EX31_RS00965at 208.782 kb on - strand, within EX31_RS00965at 208.783 kb on + strand, within EX31_RS00965at 208.783 kb on + strand, within EX31_RS00965at 208.783 kb on + strand, within EX31_RS00965at 208.784 kb on - strand, within EX31_RS00965at 208.784 kb on - strand, within EX31_RS00965at 208.784 kb on - strand, within EX31_RS00965at 208.828 kb on + strand, within EX31_RS00965at 208.828 kb on + strand, within EX31_RS00965at 208.860 kb on + strand, within EX31_RS00965at 208.910 kb on + strand, within EX31_RS00965at 209.001 kb on + strand, within EX31_RS00965at 209.001 kb on + strand, within EX31_RS00965at 209.001 kb on + strand, within EX31_RS00965at 209.058 kb on + strand, within EX31_RS00965at 209.059 kb on - strand, within EX31_RS00965at 209.076 kb on + strand, within EX31_RS00965at 209.076 kb on + strand, within EX31_RS00965at 209.077 kb on - strand, within EX31_RS00965at 209.077 kb on - strand, within EX31_RS00965at 209.079 kb on - strand, within EX31_RS00965at 209.274 kb on - strand, within EX31_RS00965at 209.295 kb on - strand, within EX31_RS00965

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
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207,112 + EX31_RS00950 0.79 -1.3
207,113 - EX31_RS00950 0.79 +0.5
207,113 - EX31_RS00950 0.79 -0.8
207,114 + EX31_RS00950 0.79 -0.5
207,114 + EX31_RS00950 0.79 +0.5
207,114 + EX31_RS00950 0.79 -0.5
207,114 + EX31_RS00950 0.79 -1.0
207,115 - EX31_RS00950 0.79 -0.4
207,115 - EX31_RS00950 0.79 -1.6
207,229 + EX31_RS00950 0.86 -0.2
207,230 - EX31_RS00950 0.87 -0.3
207,246 + EX31_RS00950 0.88 +0.3
207,251 + EX31_RS00950 0.88 -0.1
207,251 + EX31_RS00950 0.88 +0.3
207,251 + EX31_RS00950 0.88 +0.6
207,251 + EX31_RS00950 0.88 +0.7
207,252 - EX31_RS00950 0.88 -2.1
207,252 - EX31_RS00950 0.88 -0.2
207,347 - -0.0
207,350 + +0.5
207,427 + -0.2
207,427 + -0.1
207,431 + +0.1
207,432 - -0.8
207,435 + -0.9
207,435 + +0.2
207,436 - +0.6
207,456 - +1.3
207,508 + -0.5
207,508 + -0.8
207,509 - EX31_RS00955 0.10 +1.0
207,656 + EX31_RS00955 0.40 +0.8
207,656 + EX31_RS00955 0.40 +0.1
207,657 - EX31_RS00955 0.40 +0.4
207,657 - EX31_RS00955 0.40 +0.1
207,677 + EX31_RS00955 0.44 +0.4
207,677 + EX31_RS00955 0.44 -1.4
207,768 + EX31_RS00955 0.63 +0.5
207,768 + EX31_RS00955 0.63 +1.0
207,847 + EX31_RS00955 0.79 +0.6
207,848 - EX31_RS00955 0.79 +0.5
207,872 + EX31_RS00955 0.84 +0.2
207,941 + -0.0
207,988 + -1.1
207,999 - -2.2
208,100 + EX31_RS00960 0.23 +0.7
208,173 + EX31_RS00960 0.41 -1.0
208,173 + EX31_RS00960 0.41 +1.4
208,173 + EX31_RS00960 0.41 +0.2
208,207 - EX31_RS00960 0.49 +0.7
208,233 + EX31_RS00960 0.55 +0.7
208,259 + EX31_RS00960 0.61 +2.1
208,259 + EX31_RS00960 0.61 -0.1
208,338 + EX31_RS00960 0.80 -0.1
208,431 - -0.3
208,456 + -0.2
208,551 + +0.2
208,582 - +0.7
208,635 + EX31_RS00965 0.11 -0.0
208,659 - EX31_RS00965 0.13 +1.7
208,712 + EX31_RS00965 0.16 +1.0
208,781 + EX31_RS00965 0.19 -0.1
208,781 + EX31_RS00965 0.19 -2.7
208,781 + EX31_RS00965 0.19 +0.9
208,781 + EX31_RS00965 0.19 -0.0
208,782 - EX31_RS00965 0.19 +1.5
208,782 - EX31_RS00965 0.19 -0.0
208,782 - EX31_RS00965 0.19 -0.3
208,782 - EX31_RS00965 0.19 -0.3
208,783 + EX31_RS00965 0.19 +0.1
208,783 + EX31_RS00965 0.19 -0.6
208,783 + EX31_RS00965 0.19 -0.6
208,784 - EX31_RS00965 0.20 -0.3
208,784 - EX31_RS00965 0.20 -1.1
208,784 - EX31_RS00965 0.20 -2.3
208,828 + EX31_RS00965 0.22 -0.4
208,828 + EX31_RS00965 0.22 +0.2
208,860 + EX31_RS00965 0.24 +0.0
208,910 + EX31_RS00965 0.27 -0.5
209,001 + EX31_RS00965 0.32 -0.6
209,001 + EX31_RS00965 0.32 +0.4
209,001 + EX31_RS00965 0.32 +0.5
209,058 + EX31_RS00965 0.35 -0.9
209,059 - EX31_RS00965 0.35 -0.4
209,076 + EX31_RS00965 0.36 +1.1
209,076 + EX31_RS00965 0.36 +0.3
209,077 - EX31_RS00965 0.36 -0.5
209,077 - EX31_RS00965 0.36 -1.6
209,079 - EX31_RS00965 0.36 -3.3
209,274 - EX31_RS00965 0.47 -0.1
209,295 - EX31_RS00965 0.48 -0.3

Or see this region's nucleotide sequence