Strain Fitness in Rahnella sp. WP5 around EX31_RS00470

Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS00465 and EX31_RS00470 are separated by 126 nucleotidesEX31_RS00470 and EX31_RS00475 are separated by 271 nucleotidesEX31_RS00475 and EX31_RS00480 overlap by 4 nucleotides EX31_RS00465: EX31_RS00465 - efflux RND transporter periplasmic adaptor subunit, at 103,330 to 104,469 _RS00465 EX31_RS00470: EX31_RS00470 - PadR family transcriptional regulator, at 104,596 to 105,087 _RS00470 EX31_RS00475: EX31_RS00475 - membrane integrity-associated transporter subunit PqiC, at 105,359 to 105,940 _RS00475 EX31_RS00480: EX31_RS00480 - MCE family protein, at 105,937 to 107,532 _RS00480 Position (kb) 104 105 106Strain fitness (log2 ratio) -2 -1 0 1 2at 103.646 kb on - strand, within EX31_RS00465at 103.780 kb on + strand, within EX31_RS00465at 103.780 kb on + strand, within EX31_RS00465at 103.780 kb on + strand, within EX31_RS00465at 103.780 kb on + strand, within EX31_RS00465at 103.780 kb on + strand, within EX31_RS00465at 103.781 kb on - strand, within EX31_RS00465at 103.781 kb on - strand, within EX31_RS00465at 103.813 kb on - strand, within EX31_RS00465at 103.856 kb on + strand, within EX31_RS00465at 103.856 kb on + strand, within EX31_RS00465at 103.857 kb on - strand, within EX31_RS00465at 103.857 kb on - strand, within EX31_RS00465at 103.857 kb on - strand, within EX31_RS00465at 103.857 kb on - strand, within EX31_RS00465at 104.181 kb on - strand, within EX31_RS00465at 104.181 kb on - strand, within EX31_RS00465at 104.181 kb on - strand, within EX31_RS00465at 104.181 kb on - strand, within EX31_RS00465at 104.191 kb on - strand, within EX31_RS00465at 104.213 kb on + strand, within EX31_RS00465at 104.268 kb on + strand, within EX31_RS00465at 104.416 kb on - strandat 104.447 kb on - strandat 104.497 kb on + strandat 104.583 kb on + strandat 104.600 kb on - strandat 104.634 kb on - strandat 104.634 kb on - strandat 104.638 kb on - strandat 104.654 kb on - strand, within EX31_RS00470at 104.817 kb on - strand, within EX31_RS00470at 104.864 kb on - strand, within EX31_RS00470at 104.898 kb on + strand, within EX31_RS00470at 104.898 kb on + strand, within EX31_RS00470at 104.939 kb on + strand, within EX31_RS00470at 104.939 kb on + strand, within EX31_RS00470at 104.939 kb on + strand, within EX31_RS00470at 104.939 kb on + strand, within EX31_RS00470at 104.940 kb on - strand, within EX31_RS00470at 104.940 kb on - strand, within EX31_RS00470at 104.940 kb on - strand, within EX31_RS00470at 104.940 kb on - strand, within EX31_RS00470at 104.949 kb on + strand, within EX31_RS00470at 104.999 kb on - strand, within EX31_RS00470at 105.064 kb on + strandat 105.125 kb on + strandat 105.126 kb on - strandat 105.127 kb on + strandat 105.335 kb on - strandat 105.335 kb on - strandat 105.335 kb on - strandat 105.436 kb on + strand, within EX31_RS00475at 105.437 kb on - strand, within EX31_RS00475at 105.602 kb on - strand, within EX31_RS00475at 105.637 kb on + strand, within EX31_RS00475at 105.637 kb on + strand, within EX31_RS00475at 105.638 kb on - strand, within EX31_RS00475at 105.742 kb on + strand, within EX31_RS00475at 105.743 kb on - strand, within EX31_RS00475at 105.746 kb on + strand, within EX31_RS00475at 105.746 kb on + strand, within EX31_RS00475at 105.747 kb on - strand, within EX31_RS00475at 105.794 kb on + strand, within EX31_RS00475at 105.794 kb on + strand, within EX31_RS00475at 105.794 kb on + strand, within EX31_RS00475at 105.795 kb on - strand, within EX31_RS00475at 105.861 kb on + strand, within EX31_RS00475at 105.861 kb on + strand, within EX31_RS00475at 105.861 kb on + strand, within EX31_RS00475at 105.861 kb on + strand, within EX31_RS00475at 105.861 kb on + strand, within EX31_RS00475at 105.862 kb on - strand, within EX31_RS00475at 105.862 kb on - strand, within EX31_RS00475at 105.864 kb on + strand, within EX31_RS00475at 105.865 kb on - strand, within EX31_RS00475at 105.865 kb on - strand, within EX31_RS00475at 105.951 kb on + strandat 106.026 kb on - strandat 106.027 kb on + strandat 106.027 kb on + strandat 106.027 kb on + strandat 106.027 kb on + strandat 106.028 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
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103,646 - EX31_RS00465 0.28 +0.4
103,780 + EX31_RS00465 0.39 -0.2
103,780 + EX31_RS00465 0.39 -0.1
103,780 + EX31_RS00465 0.39 +1.0
103,780 + EX31_RS00465 0.39 -1.2
103,780 + EX31_RS00465 0.39 +0.4
103,781 - EX31_RS00465 0.40 +0.7
103,781 - EX31_RS00465 0.40 +0.3
103,813 - EX31_RS00465 0.42 -0.5
103,856 + EX31_RS00465 0.46 -0.5
103,856 + EX31_RS00465 0.46 +0.7
103,857 - EX31_RS00465 0.46 +0.7
103,857 - EX31_RS00465 0.46 -0.1
103,857 - EX31_RS00465 0.46 -0.2
103,857 - EX31_RS00465 0.46 -2.2
104,181 - EX31_RS00465 0.75 +0.1
104,181 - EX31_RS00465 0.75 -1.4
104,181 - EX31_RS00465 0.75 -0.1
104,181 - EX31_RS00465 0.75 -0.4
104,191 - EX31_RS00465 0.76 +0.0
104,213 + EX31_RS00465 0.77 +1.4
104,268 + EX31_RS00465 0.82 -0.1
104,416 - -0.1
104,447 - +0.3
104,497 + +2.0
104,583 + -0.7
104,600 - +1.3
104,634 - -0.6
104,634 - +0.5
104,638 - -0.6
104,654 - EX31_RS00470 0.12 -0.9
104,817 - EX31_RS00470 0.45 -1.2
104,864 - EX31_RS00470 0.54 -1.5
104,898 + EX31_RS00470 0.61 +2.0
104,898 + EX31_RS00470 0.61 -1.1
104,939 + EX31_RS00470 0.70 -1.9
104,939 + EX31_RS00470 0.70 -0.9
104,939 + EX31_RS00470 0.70 -0.6
104,939 + EX31_RS00470 0.70 +1.2
104,940 - EX31_RS00470 0.70 -1.4
104,940 - EX31_RS00470 0.70 +0.2
104,940 - EX31_RS00470 0.70 -0.6
104,940 - EX31_RS00470 0.70 +0.2
104,949 + EX31_RS00470 0.72 -1.2
104,999 - EX31_RS00470 0.82 +0.8
105,064 + -1.0
105,125 + +0.5
105,126 - +0.1
105,127 + +0.0
105,335 - -0.5
105,335 - +0.7
105,335 - -0.0
105,436 + EX31_RS00475 0.13 -1.0
105,437 - EX31_RS00475 0.13 +0.7
105,602 - EX31_RS00475 0.42 +1.6
105,637 + EX31_RS00475 0.48 -0.6
105,637 + EX31_RS00475 0.48 +0.7
105,638 - EX31_RS00475 0.48 -0.5
105,742 + EX31_RS00475 0.66 +0.1
105,743 - EX31_RS00475 0.66 +2.0
105,746 + EX31_RS00475 0.66 +0.3
105,746 + EX31_RS00475 0.66 +0.2
105,747 - EX31_RS00475 0.67 +1.4
105,794 + EX31_RS00475 0.75 +0.6
105,794 + EX31_RS00475 0.75 +0.6
105,794 + EX31_RS00475 0.75 -2.6
105,795 - EX31_RS00475 0.75 +0.5
105,861 + EX31_RS00475 0.86 +1.4
105,861 + EX31_RS00475 0.86 +0.1
105,861 + EX31_RS00475 0.86 -0.6
105,861 + EX31_RS00475 0.86 -0.3
105,861 + EX31_RS00475 0.86 -0.3
105,862 - EX31_RS00475 0.86 +0.4
105,862 - EX31_RS00475 0.86 -2.3
105,864 + EX31_RS00475 0.87 +1.1
105,865 - EX31_RS00475 0.87 +0.6
105,865 - EX31_RS00475 0.87 -0.9
105,951 + -0.3
106,026 - +1.0
106,027 + +0.1
106,027 + +0.0
106,027 + -1.1
106,027 + +0.2
106,028 - -0.2

Or see this region's nucleotide sequence