Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS00290 and EX31_RS00295 are separated by 134 nucleotides EX31_RS00295 and EX31_RS00300 are separated by 17 nucleotides EX31_RS00300 and EX31_RS00305 overlap by 4 nucleotides
EX31_RS00290: EX31_RS00290 - AraC family transcriptional regulator, at 62,617 to 63,519
_RS00290
EX31_RS00295: EX31_RS00295 - SDR family oxidoreductase, at 63,654 to 64,397
_RS00295
EX31_RS00300: EX31_RS00300 - extradiol dioxygenase, at 64,415 to 64,819
_RS00300
EX31_RS00305: EX31_RS00305 - NAD(P)H-binding protein, at 64,816 to 65,799
_RS00305
Position (kb) 64
65 Strain fitness (log2 ratio) -2
-1
0
1
2 at 63.415 kb on - strand, within EX31_RS00290 at 63.524 kb on + strand at 63.524 kb on + strand at 63.524 kb on + strand at 63.524 kb on + strand at 63.524 kb on + strand at 63.524 kb on + strand at 63.524 kb on + strand at 63.524 kb on + strand at 63.524 kb on + strand at 63.524 kb on + strand at 63.524 kb on + strand at 63.524 kb on + strand at 63.524 kb on + strand at 63.524 kb on + strand at 63.524 kb on + strand at 63.524 kb on + strand at 63.524 kb on + strand at 63.525 kb on - strand at 63.525 kb on - strand at 63.525 kb on - strand at 63.525 kb on - strand at 63.525 kb on - strand at 63.555 kb on + strand at 63.611 kb on - strand at 63.615 kb on + strand at 63.616 kb on - strand at 63.616 kb on - strand at 63.618 kb on + strand at 63.618 kb on + strand at 63.618 kb on + strand at 63.618 kb on + strand at 63.619 kb on - strand at 63.621 kb on + strand at 63.662 kb on + strand at 63.670 kb on + strand at 63.740 kb on - strand, within EX31_RS00295 at 63.747 kb on + strand, within EX31_RS00295 at 63.752 kb on + strand, within EX31_RS00295 at 63.752 kb on + strand, within EX31_RS00295 at 63.752 kb on + strand, within EX31_RS00295 at 63.752 kb on + strand, within EX31_RS00295 at 63.753 kb on - strand, within EX31_RS00295 at 63.753 kb on - strand, within EX31_RS00295 at 63.806 kb on + strand, within EX31_RS00295 at 63.854 kb on + strand, within EX31_RS00295 at 63.880 kb on + strand, within EX31_RS00295 at 63.880 kb on + strand, within EX31_RS00295 at 63.880 kb on + strand, within EX31_RS00295 at 63.880 kb on + strand, within EX31_RS00295 at 63.920 kb on - strand, within EX31_RS00295 at 64.004 kb on + strand, within EX31_RS00295 at 64.116 kb on + strand, within EX31_RS00295 at 64.116 kb on + strand, within EX31_RS00295 at 64.116 kb on + strand, within EX31_RS00295 at 64.145 kb on - strand, within EX31_RS00295 at 64.155 kb on + strand, within EX31_RS00295 at 64.155 kb on + strand, within EX31_RS00295 at 64.156 kb on - strand, within EX31_RS00295 at 64.157 kb on + strand, within EX31_RS00295 at 64.199 kb on + strand, within EX31_RS00295 at 64.200 kb on - strand, within EX31_RS00295 at 64.309 kb on + strand, within EX31_RS00295 at 64.309 kb on + strand, within EX31_RS00295 at 64.309 kb on + strand, within EX31_RS00295 at 64.309 kb on + strand, within EX31_RS00295 at 64.310 kb on - strand, within EX31_RS00295 at 64.310 kb on - strand, within EX31_RS00295 at 64.310 kb on - strand, within EX31_RS00295 at 64.310 kb on - strand, within EX31_RS00295 at 64.310 kb on - strand, within EX31_RS00295 at 64.313 kb on + strand, within EX31_RS00295 at 64.314 kb on - strand, within EX31_RS00295 at 64.395 kb on + strand at 64.414 kb on + strand at 64.426 kb on + strand at 64.426 kb on + strand at 64.514 kb on + strand, within EX31_RS00300 at 64.515 kb on - strand, within EX31_RS00300 at 64.643 kb on - strand, within EX31_RS00300 at 64.667 kb on + strand, within EX31_RS00300 at 64.667 kb on + strand, within EX31_RS00300 at 64.724 kb on + strand, within EX31_RS00300 at 64.725 kb on - strand, within EX31_RS00300 at 64.725 kb on - strand, within EX31_RS00300 at 64.725 kb on - strand, within EX31_RS00300 at 64.725 kb on - strand, within EX31_RS00300 at 64.727 kb on + strand, within EX31_RS00300 at 64.728 kb on - strand, within EX31_RS00300 at 64.742 kb on + strand, within EX31_RS00300 at 64.742 kb on + strand, within EX31_RS00300 at 64.742 kb on + strand, within EX31_RS00300 at 64.742 kb on + strand, within EX31_RS00300 at 64.742 kb on + strand, within EX31_RS00300 at 64.742 kb on + strand, within EX31_RS00300 at 64.742 kb on + strand, within EX31_RS00300 at 64.743 kb on - strand, within EX31_RS00300 at 64.743 kb on - strand, within EX31_RS00300 at 64.793 kb on - strand at 64.826 kb on + strand at 64.826 kb on + strand at 64.826 kb on + strand at 64.827 kb on - strand at 64.827 kb on - strand at 64.830 kb on + strand at 64.831 kb on - strand at 65.006 kb on + strand, within EX31_RS00305 at 65.024 kb on + strand, within EX31_RS00305 at 65.024 kb on + strand, within EX31_RS00305 at 65.024 kb on + strand, within EX31_RS00305 at 65.082 kb on + strand, within EX31_RS00305 at 65.098 kb on + strand, within EX31_RS00305 at 65.098 kb on + strand, within EX31_RS00305 at 65.106 kb on + strand, within EX31_RS00305 at 65.420 kb on + strand, within EX31_RS00305 at 65.421 kb on - strand, within EX31_RS00305 at 65.421 kb on - strand, within EX31_RS00305 at 65.494 kb on + strand, within EX31_RS00305 at 65.494 kb on + strand, within EX31_RS00305 at 65.494 kb on + strand, within EX31_RS00305 at 65.495 kb on - strand, within EX31_RS00305 at 65.534 kb on + strand, within EX31_RS00305 at 65.578 kb on - strand, within EX31_RS00305 at 65.664 kb on + strand, within EX31_RS00305 at 65.665 kb on - strand, within EX31_RS00305 at 65.703 kb on + strand at 65.792 kb on + strand at 65.804 kb on + strand at 65.804 kb on + strand at 65.804 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 63,415 - EX31_RS00290 0.88 +1.0 63,524 + +0.8 63,524 + -0.3 63,524 + -1.5 63,524 + +0.2 63,524 + +0.7 63,524 + -1.0 63,524 + -0.6 63,524 + +0.4 63,524 + -0.0 63,524 + +0.1 63,524 + -2.1 63,524 + +0.5 63,524 + -0.8 63,524 + -0.6 63,524 + -1.2 63,524 + -0.7 63,524 + -0.1 63,525 - +0.4 63,525 - -0.6 63,525 - -0.2 63,525 - +1.4 63,525 - -1.4 63,555 + -0.6 63,611 - +0.4 63,615 + -1.3 63,616 - +0.2 63,616 - +0.1 63,618 + +0.7 63,618 + -0.1 63,618 + -1.3 63,618 + -1.3 63,619 - +1.7 63,621 + -0.1 63,662 + -0.1 63,670 + -0.4 63,740 - EX31_RS00295 0.12 +0.8 63,747 + EX31_RS00295 0.12 -0.6 63,752 + EX31_RS00295 0.13 -0.3 63,752 + EX31_RS00295 0.13 +0.2 63,752 + EX31_RS00295 0.13 +0.2 63,752 + EX31_RS00295 0.13 +0.9 63,753 - EX31_RS00295 0.13 +0.5 63,753 - EX31_RS00295 0.13 -0.1 63,806 + EX31_RS00295 0.20 +0.6 63,854 + EX31_RS00295 0.27 -0.6 63,880 + EX31_RS00295 0.30 +0.7 63,880 + EX31_RS00295 0.30 -0.1 63,880 + EX31_RS00295 0.30 +0.1 63,880 + EX31_RS00295 0.30 +0.8 63,920 - EX31_RS00295 0.36 -1.8 64,004 + EX31_RS00295 0.47 -1.2 64,116 + EX31_RS00295 0.62 +0.9 64,116 + EX31_RS00295 0.62 -1.1 64,116 + EX31_RS00295 0.62 +1.0 64,145 - EX31_RS00295 0.66 -0.2 64,155 + EX31_RS00295 0.67 +0.4 64,155 + EX31_RS00295 0.67 +0.2 64,156 - EX31_RS00295 0.67 +0.1 64,157 + EX31_RS00295 0.68 -0.1 64,199 + EX31_RS00295 0.73 +0.4 64,200 - EX31_RS00295 0.73 -0.2 64,309 + EX31_RS00295 0.88 +0.8 64,309 + EX31_RS00295 0.88 +0.9 64,309 + EX31_RS00295 0.88 -2.1 64,309 + EX31_RS00295 0.88 +0.6 64,310 - EX31_RS00295 0.88 +0.8 64,310 - EX31_RS00295 0.88 -1.3 64,310 - EX31_RS00295 0.88 +0.1 64,310 - EX31_RS00295 0.88 +0.4 64,310 - EX31_RS00295 0.88 +0.2 64,313 + EX31_RS00295 0.89 +0.5 64,314 - EX31_RS00295 0.89 -1.3 64,395 + +0.6 64,414 + -1.5 64,426 + +1.9 64,426 + -1.2 64,514 + EX31_RS00300 0.24 -0.9 64,515 - EX31_RS00300 0.25 -0.4 64,643 - EX31_RS00300 0.56 -0.4 64,667 + EX31_RS00300 0.62 -1.2 64,667 + EX31_RS00300 0.62 -2.2 64,724 + EX31_RS00300 0.76 -0.1 64,725 - EX31_RS00300 0.77 -0.4 64,725 - EX31_RS00300 0.77 +0.6 64,725 - EX31_RS00300 0.77 -1.6 64,725 - EX31_RS00300 0.77 +0.9 64,727 + EX31_RS00300 0.77 -0.7 64,728 - EX31_RS00300 0.77 -1.6 64,742 + EX31_RS00300 0.81 -1.4 64,742 + EX31_RS00300 0.81 +0.3 64,742 + EX31_RS00300 0.81 -2.3 64,742 + EX31_RS00300 0.81 -1.1 64,742 + EX31_RS00300 0.81 -2.6 64,742 + EX31_RS00300 0.81 -0.7 64,742 + EX31_RS00300 0.81 -0.9 64,743 - EX31_RS00300 0.81 +0.1 64,743 - EX31_RS00300 0.81 -1.2 64,793 - +1.2 64,826 + -0.9 64,826 + -0.1 64,826 + -0.7 64,827 - +0.4 64,827 - -1.2 64,830 + +0.1 64,831 - -0.5 65,006 + EX31_RS00305 0.19 -1.0 65,024 + EX31_RS00305 0.21 -0.1 65,024 + EX31_RS00305 0.21 -0.4 65,024 + EX31_RS00305 0.21 +0.6 65,082 + EX31_RS00305 0.27 +0.2 65,098 + EX31_RS00305 0.29 +1.2 65,098 + EX31_RS00305 0.29 +0.6 65,106 + EX31_RS00305 0.29 +0.4 65,420 + EX31_RS00305 0.61 -0.6 65,421 - EX31_RS00305 0.61 +0.5 65,421 - EX31_RS00305 0.61 +0.3 65,494 + EX31_RS00305 0.69 -0.4 65,494 + EX31_RS00305 0.69 -0.1 65,494 + EX31_RS00305 0.69 +0.5 65,495 - EX31_RS00305 0.69 +0.5 65,534 + EX31_RS00305 0.73 +1.6 65,578 - EX31_RS00305 0.77 -0.6 65,664 + EX31_RS00305 0.86 -1.8 65,665 - EX31_RS00305 0.86 +0.1 65,703 + -1.0 65,792 + -0.1 65,804 + +0.5 65,804 + -1.4 65,804 + +0.4
Or see this region's nucleotide sequence