Strain Fitness in Rahnella sp. WP5 around EX31_RS23980

Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS23975 and EX31_RS23980 are separated by 2 nucleotidesEX31_RS23980 and EX31_RS23985 overlap by 4 nucleotides EX31_RS23975: EX31_RS23975 - class I SAM-dependent methyltransferase, at 563,045 to 564,277 _RS23975 EX31_RS23980: EX31_RS23980 - DUF1365 domain-containing protein, at 564,280 to 564,996 _RS23980 EX31_RS23985: EX31_RS23985 - FAD-dependent oxidoreductase, at 564,993 to 566,351 _RS23985 Position (kb) 564 565Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 563.296 kb on + strand, within EX31_RS23975at 563.297 kb on - strand, within EX31_RS23975at 563.338 kb on + strand, within EX31_RS23975at 563.367 kb on + strand, within EX31_RS23975at 563.367 kb on + strand, within EX31_RS23975at 563.458 kb on - strand, within EX31_RS23975at 563.527 kb on - strand, within EX31_RS23975at 563.796 kb on + strand, within EX31_RS23975at 563.797 kb on - strand, within EX31_RS23975at 563.797 kb on - strand, within EX31_RS23975at 563.797 kb on - strand, within EX31_RS23975at 563.797 kb on - strand, within EX31_RS23975at 563.797 kb on - strand, within EX31_RS23975at 563.797 kb on - strand, within EX31_RS23975at 563.826 kb on + strand, within EX31_RS23975at 563.847 kb on + strand, within EX31_RS23975at 563.848 kb on - strand, within EX31_RS23975at 563.954 kb on - strand, within EX31_RS23975at 564.004 kb on + strand, within EX31_RS23975at 564.028 kb on + strand, within EX31_RS23975at 564.029 kb on - strand, within EX31_RS23975at 564.199 kb on + strandat 564.288 kb on + strandat 564.308 kb on + strandat 564.308 kb on + strandat 564.308 kb on + strandat 564.308 kb on + strandat 564.350 kb on + strandat 564.350 kb on + strandat 564.351 kb on - strandat 564.354 kb on + strand, within EX31_RS23980at 564.354 kb on + strand, within EX31_RS23980at 564.355 kb on - strand, within EX31_RS23980at 564.355 kb on - strand, within EX31_RS23980at 564.355 kb on - strand, within EX31_RS23980at 564.370 kb on - strand, within EX31_RS23980at 564.469 kb on - strand, within EX31_RS23980at 564.493 kb on + strand, within EX31_RS23980at 564.493 kb on + strand, within EX31_RS23980at 564.493 kb on + strand, within EX31_RS23980at 564.493 kb on + strand, within EX31_RS23980at 564.527 kb on + strand, within EX31_RS23980at 564.605 kb on + strand, within EX31_RS23980at 564.605 kb on + strand, within EX31_RS23980at 564.605 kb on + strand, within EX31_RS23980at 564.606 kb on - strand, within EX31_RS23980at 564.606 kb on - strand, within EX31_RS23980at 564.606 kb on - strand, within EX31_RS23980at 564.606 kb on - strand, within EX31_RS23980at 564.630 kb on + strand, within EX31_RS23980at 564.720 kb on - strand, within EX31_RS23980at 564.733 kb on + strand, within EX31_RS23980at 564.733 kb on + strand, within EX31_RS23980at 564.867 kb on + strand, within EX31_RS23980at 564.880 kb on + strand, within EX31_RS23980at 564.880 kb on + strand, within EX31_RS23980at 564.881 kb on - strand, within EX31_RS23980at 564.922 kb on - strand, within EX31_RS23980at 564.926 kb on + strandat 564.952 kb on - strandat 564.980 kb on + strandat 564.980 kb on + strandat 564.980 kb on + strandat 564.981 kb on - strandat 564.981 kb on - strandat 564.981 kb on - strandat 564.981 kb on - strandat 564.981 kb on - strandat 564.981 kb on - strandat 565.108 kb on + strandat 565.108 kb on + strandat 565.205 kb on + strand, within EX31_RS23985at 565.206 kb on - strand, within EX31_RS23985at 565.206 kb on - strand, within EX31_RS23985at 565.206 kb on - strand, within EX31_RS23985at 565.206 kb on - strand, within EX31_RS23985at 565.206 kb on - strand, within EX31_RS23985at 565.206 kb on - strand, within EX31_RS23985at 565.207 kb on + strand, within EX31_RS23985at 565.207 kb on + strand, within EX31_RS23985at 565.207 kb on + strand, within EX31_RS23985at 565.207 kb on + strand, within EX31_RS23985at 565.207 kb on + strand, within EX31_RS23985at 565.207 kb on + strand, within EX31_RS23985at 565.207 kb on + strand, within EX31_RS23985at 565.207 kb on + strand, within EX31_RS23985at 565.207 kb on + strand, within EX31_RS23985at 565.207 kb on + strand, within EX31_RS23985at 565.207 kb on + strand, within EX31_RS23985at 565.207 kb on + strand, within EX31_RS23985at 565.207 kb on + strand, within EX31_RS23985at 565.207 kb on + strand, within EX31_RS23985at 565.207 kb on + strand, within EX31_RS23985at 565.207 kb on + strand, within EX31_RS23985at 565.207 kb on + strand, within EX31_RS23985at 565.207 kb on + strand, within EX31_RS23985at 565.207 kb on + strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.283 kb on + strand, within EX31_RS23985at 565.302 kb on - strand, within EX31_RS23985at 565.302 kb on - strand, within EX31_RS23985at 565.310 kb on + strand, within EX31_RS23985at 565.310 kb on + strand, within EX31_RS23985at 565.312 kb on + strand, within EX31_RS23985at 565.312 kb on + strand, within EX31_RS23985at 565.312 kb on + strand, within EX31_RS23985at 565.312 kb on + strand, within EX31_RS23985at 565.312 kb on + strand, within EX31_RS23985at 565.312 kb on + strand, within EX31_RS23985at 565.312 kb on + strand, within EX31_RS23985at 565.312 kb on + strand, within EX31_RS23985at 565.312 kb on + strand, within EX31_RS23985at 565.313 kb on - strand, within EX31_RS23985at 565.313 kb on - strand, within EX31_RS23985at 565.313 kb on - strand, within EX31_RS23985at 565.313 kb on - strand, within EX31_RS23985at 565.313 kb on - strand, within EX31_RS23985at 565.313 kb on - strand, within EX31_RS23985at 565.356 kb on + strand, within EX31_RS23985at 565.356 kb on + strand, within EX31_RS23985at 565.356 kb on + strand, within EX31_RS23985at 565.356 kb on + strand, within EX31_RS23985at 565.356 kb on + strand, within EX31_RS23985at 565.357 kb on - strand, within EX31_RS23985at 565.357 kb on - strand, within EX31_RS23985at 565.357 kb on - strand, within EX31_RS23985at 565.399 kb on + strand, within EX31_RS23985at 565.400 kb on - strand, within EX31_RS23985at 565.565 kb on + strand, within EX31_RS23985at 565.608 kb on + strand, within EX31_RS23985at 565.698 kb on - strand, within EX31_RS23985at 565.699 kb on + strand, within EX31_RS23985at 565.699 kb on + strand, within EX31_RS23985at 565.699 kb on + strand, within EX31_RS23985at 565.699 kb on + strand, within EX31_RS23985at 565.700 kb on - strand, within EX31_RS23985at 565.700 kb on - strand, within EX31_RS23985at 565.700 kb on - strand, within EX31_RS23985at 565.855 kb on + strand, within EX31_RS23985at 565.855 kb on + strand, within EX31_RS23985at 565.855 kb on + strand, within EX31_RS23985at 565.855 kb on + strand, within EX31_RS23985at 565.855 kb on + strand, within EX31_RS23985at 565.855 kb on + strand, within EX31_RS23985at 565.855 kb on + strand, within EX31_RS23985at 565.856 kb on - strand, within EX31_RS23985at 565.856 kb on - strand, within EX31_RS23985at 565.856 kb on - strand, within EX31_RS23985at 565.856 kb on - strand, within EX31_RS23985at 565.856 kb on - strand, within EX31_RS23985at 565.856 kb on - strand, within EX31_RS23985at 565.910 kb on + strand, within EX31_RS23985at 565.911 kb on - strand, within EX31_RS23985

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
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563,296 + EX31_RS23975 0.20 -1.3
563,297 - EX31_RS23975 0.20 +0.2
563,338 + EX31_RS23975 0.24 -0.4
563,367 + EX31_RS23975 0.26 -1.9
563,367 + EX31_RS23975 0.26 -0.7
563,458 - EX31_RS23975 0.33 +0.2
563,527 - EX31_RS23975 0.39 -2.5
563,796 + EX31_RS23975 0.61 -0.9
563,797 - EX31_RS23975 0.61 -0.3
563,797 - EX31_RS23975 0.61 -0.6
563,797 - EX31_RS23975 0.61 -0.4
563,797 - EX31_RS23975 0.61 -1.4
563,797 - EX31_RS23975 0.61 +0.6
563,797 - EX31_RS23975 0.61 +0.4
563,826 + EX31_RS23975 0.63 -0.6
563,847 + EX31_RS23975 0.65 +0.1
563,848 - EX31_RS23975 0.65 -1.4
563,954 - EX31_RS23975 0.74 -1.0
564,004 + EX31_RS23975 0.78 +0.8
564,028 + EX31_RS23975 0.80 -0.8
564,029 - EX31_RS23975 0.80 +0.6
564,199 + -0.4
564,288 + -0.2
564,308 + -0.2
564,308 + -0.0
564,308 + -1.2
564,308 + +0.2
564,350 + -0.3
564,350 + +0.4
564,351 - -0.7
564,354 + EX31_RS23980 0.10 +0.3
564,354 + EX31_RS23980 0.10 -0.5
564,355 - EX31_RS23980 0.10 -1.2
564,355 - EX31_RS23980 0.10 -0.0
564,355 - EX31_RS23980 0.10 -2.3
564,370 - EX31_RS23980 0.13 -0.1
564,469 - EX31_RS23980 0.26 +0.7
564,493 + EX31_RS23980 0.30 +0.8
564,493 + EX31_RS23980 0.30 -0.3
564,493 + EX31_RS23980 0.30 -0.7
564,493 + EX31_RS23980 0.30 +0.1
564,527 + EX31_RS23980 0.34 -1.4
564,605 + EX31_RS23980 0.45 -0.2
564,605 + EX31_RS23980 0.45 -0.9
564,605 + EX31_RS23980 0.45 -1.0
564,606 - EX31_RS23980 0.45 -2.5
564,606 - EX31_RS23980 0.45 -0.9
564,606 - EX31_RS23980 0.45 -0.3
564,606 - EX31_RS23980 0.45 -0.2
564,630 + EX31_RS23980 0.49 +0.1
564,720 - EX31_RS23980 0.61 -0.2
564,733 + EX31_RS23980 0.63 -2.3
564,733 + EX31_RS23980 0.63 -0.5
564,867 + EX31_RS23980 0.82 -0.3
564,880 + EX31_RS23980 0.84 -0.5
564,880 + EX31_RS23980 0.84 -0.0
564,881 - EX31_RS23980 0.84 +0.9
564,922 - EX31_RS23980 0.90 -0.1
564,926 + +0.2
564,952 - +0.2
564,980 + -0.0
564,980 + +0.5
564,980 + -0.5
564,981 - -0.2
564,981 - -0.6
564,981 - -1.8
564,981 - -0.9
564,981 - -0.7
564,981 - -1.2
565,108 + +0.1
565,108 + +0.0
565,205 + EX31_RS23985 0.16 +1.0
565,206 - EX31_RS23985 0.16 +0.5
565,206 - EX31_RS23985 0.16 -1.3
565,206 - EX31_RS23985 0.16 +0.1
565,206 - EX31_RS23985 0.16 -0.3
565,206 - EX31_RS23985 0.16 -2.3
565,206 - EX31_RS23985 0.16 -1.5
565,207 + EX31_RS23985 0.16 -0.2
565,207 + EX31_RS23985 0.16 +0.7
565,207 + EX31_RS23985 0.16 -0.7
565,207 + EX31_RS23985 0.16 -2.3
565,207 + EX31_RS23985 0.16 +0.5
565,207 + EX31_RS23985 0.16 +0.7
565,207 + EX31_RS23985 0.16 -1.1
565,207 + EX31_RS23985 0.16 -0.1
565,207 + EX31_RS23985 0.16 -2.3
565,207 + EX31_RS23985 0.16 -1.5
565,207 + EX31_RS23985 0.16 +0.8
565,207 + EX31_RS23985 0.16 +1.9
565,207 + EX31_RS23985 0.16 -2.0
565,207 + EX31_RS23985 0.16 -0.7
565,207 + EX31_RS23985 0.16 +0.8
565,207 + EX31_RS23985 0.16 -0.6
565,207 + EX31_RS23985 0.16 -0.2
565,207 + EX31_RS23985 0.16 +0.1
565,207 + EX31_RS23985 0.16 -0.7
565,208 - EX31_RS23985 0.16 -0.7
565,208 - EX31_RS23985 0.16 +0.0
565,208 - EX31_RS23985 0.16 +0.9
565,208 - EX31_RS23985 0.16 -0.1
565,208 - EX31_RS23985 0.16 +0.2
565,208 - EX31_RS23985 0.16 -0.0
565,208 - EX31_RS23985 0.16 -0.7
565,208 - EX31_RS23985 0.16 -0.2
565,208 - EX31_RS23985 0.16 +0.1
565,208 - EX31_RS23985 0.16 +0.2
565,208 - EX31_RS23985 0.16 +0.5
565,208 - EX31_RS23985 0.16 -1.6
565,208 - EX31_RS23985 0.16 -0.1
565,208 - EX31_RS23985 0.16 +0.7
565,208 - EX31_RS23985 0.16 +1.1
565,208 - EX31_RS23985 0.16 -0.9
565,208 - EX31_RS23985 0.16 +1.3
565,208 - EX31_RS23985 0.16 +0.8
565,208 - EX31_RS23985 0.16 +0.5
565,208 - EX31_RS23985 0.16 -0.4
565,208 - EX31_RS23985 0.16 -0.8
565,208 - EX31_RS23985 0.16 -0.7
565,208 - EX31_RS23985 0.16 -0.8
565,208 - EX31_RS23985 0.16 +1.1
565,208 - EX31_RS23985 0.16 -0.5
565,208 - EX31_RS23985 0.16 -0.2
565,208 - EX31_RS23985 0.16 -0.8
565,208 - EX31_RS23985 0.16 -1.3
565,208 - EX31_RS23985 0.16 +0.8
565,208 - EX31_RS23985 0.16 -0.6
565,208 - EX31_RS23985 0.16 +0.1
565,283 + EX31_RS23985 0.21 +0.6
565,302 - EX31_RS23985 0.23 +0.4
565,302 - EX31_RS23985 0.23 +0.0
565,310 + EX31_RS23985 0.23 +1.1
565,310 + EX31_RS23985 0.23 -0.8
565,312 + EX31_RS23985 0.23 +0.2
565,312 + EX31_RS23985 0.23 -0.5
565,312 + EX31_RS23985 0.23 +0.0
565,312 + EX31_RS23985 0.23 -0.2
565,312 + EX31_RS23985 0.23 +0.6
565,312 + EX31_RS23985 0.23 +0.3
565,312 + EX31_RS23985 0.23 -0.7
565,312 + EX31_RS23985 0.23 -0.5
565,312 + EX31_RS23985 0.23 +0.4
565,313 - EX31_RS23985 0.24 -1.2
565,313 - EX31_RS23985 0.24 +0.4
565,313 - EX31_RS23985 0.24 -0.7
565,313 - EX31_RS23985 0.24 -0.2
565,313 - EX31_RS23985 0.24 +0.6
565,313 - EX31_RS23985 0.24 -0.7
565,356 + EX31_RS23985 0.27 -0.1
565,356 + EX31_RS23985 0.27 -3.2
565,356 + EX31_RS23985 0.27 +0.5
565,356 + EX31_RS23985 0.27 +0.3
565,356 + EX31_RS23985 0.27 +0.4
565,357 - EX31_RS23985 0.27 -1.5
565,357 - EX31_RS23985 0.27 +0.6
565,357 - EX31_RS23985 0.27 -1.5
565,399 + EX31_RS23985 0.30 +0.5
565,400 - EX31_RS23985 0.30 +0.2
565,565 + EX31_RS23985 0.42 +1.5
565,608 + EX31_RS23985 0.45 +1.1
565,698 - EX31_RS23985 0.52 +0.1
565,699 + EX31_RS23985 0.52 +0.1
565,699 + EX31_RS23985 0.52 +0.5
565,699 + EX31_RS23985 0.52 -0.2
565,699 + EX31_RS23985 0.52 -0.1
565,700 - EX31_RS23985 0.52 -1.5
565,700 - EX31_RS23985 0.52 -1.3
565,700 - EX31_RS23985 0.52 -0.4
565,855 + EX31_RS23985 0.63 +1.4
565,855 + EX31_RS23985 0.63 -0.4
565,855 + EX31_RS23985 0.63 +1.3
565,855 + EX31_RS23985 0.63 +0.8
565,855 + EX31_RS23985 0.63 -1.0
565,855 + EX31_RS23985 0.63 -1.4
565,855 + EX31_RS23985 0.63 +0.0
565,856 - EX31_RS23985 0.64 +0.8
565,856 - EX31_RS23985 0.64 +0.5
565,856 - EX31_RS23985 0.64 -0.3
565,856 - EX31_RS23985 0.64 -1.7
565,856 - EX31_RS23985 0.64 -1.7
565,856 - EX31_RS23985 0.64 +0.4
565,910 + EX31_RS23985 0.67 -1.5
565,911 - EX31_RS23985 0.68 -0.1

Or see this region's nucleotide sequence