Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS23930 and EX31_RS23935 are separated by 362 nucleotides EX31_RS23935 and EX31_RS23940 are separated by 61 nucleotides
EX31_RS23930: EX31_RS23930 - MFS transporter, at 554,389 to 555,885
_RS23930
EX31_RS23935: EX31_RS23935 - ABC transporter substrate-binding protein, at 556,248 to 557,186
_RS23935
EX31_RS23940: EX31_RS23940 - ABC transporter permease, at 557,248 to 558,417
_RS23940
Position (kb) 556
557
558 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 555.277 kb on + strand, within EX31_RS23930 at 555.278 kb on - strand, within EX31_RS23930 at 555.284 kb on + strand, within EX31_RS23930 at 555.306 kb on - strand, within EX31_RS23930 at 555.364 kb on - strand, within EX31_RS23930 at 555.522 kb on + strand, within EX31_RS23930 at 555.522 kb on + strand, within EX31_RS23930 at 555.522 kb on + strand, within EX31_RS23930 at 555.522 kb on + strand, within EX31_RS23930 at 555.522 kb on + strand, within EX31_RS23930 at 555.522 kb on + strand, within EX31_RS23930 at 555.522 kb on + strand, within EX31_RS23930 at 555.522 kb on + strand, within EX31_RS23930 at 555.523 kb on - strand, within EX31_RS23930 at 555.523 kb on - strand, within EX31_RS23930 at 555.523 kb on - strand, within EX31_RS23930 at 555.532 kb on - strand, within EX31_RS23930 at 555.695 kb on + strand, within EX31_RS23930 at 555.776 kb on - strand at 555.783 kb on + strand at 555.786 kb on + strand at 555.787 kb on - strand at 555.840 kb on - strand at 555.840 kb on - strand at 555.840 kb on - strand at 555.921 kb on + strand at 555.955 kb on + strand at 555.982 kb on + strand at 555.982 kb on + strand at 555.982 kb on + strand at 555.983 kb on - strand at 555.983 kb on - strand at 555.987 kb on + strand at 556.067 kb on + strand at 556.082 kb on + strand at 556.082 kb on + strand at 556.082 kb on + strand at 556.083 kb on - strand at 556.083 kb on - strand at 556.091 kb on + strand at 556.153 kb on - strand at 556.226 kb on + strand at 556.226 kb on + strand at 556.243 kb on - strand at 556.271 kb on - strand at 556.312 kb on + strand at 556.394 kb on + strand, within EX31_RS23935 at 556.394 kb on + strand, within EX31_RS23935 at 556.394 kb on + strand, within EX31_RS23935 at 556.395 kb on - strand, within EX31_RS23935 at 556.395 kb on - strand, within EX31_RS23935 at 556.430 kb on + strand, within EX31_RS23935 at 556.430 kb on + strand, within EX31_RS23935 at 556.431 kb on - strand, within EX31_RS23935 at 556.436 kb on + strand, within EX31_RS23935 at 556.500 kb on + strand, within EX31_RS23935 at 556.722 kb on + strand, within EX31_RS23935 at 556.722 kb on + strand, within EX31_RS23935 at 556.722 kb on + strand, within EX31_RS23935 at 556.722 kb on + strand, within EX31_RS23935 at 556.722 kb on + strand, within EX31_RS23935 at 556.722 kb on + strand, within EX31_RS23935 at 556.722 kb on + strand, within EX31_RS23935 at 556.723 kb on - strand, within EX31_RS23935 at 556.723 kb on - strand, within EX31_RS23935 at 556.723 kb on - strand, within EX31_RS23935 at 556.723 kb on - strand, within EX31_RS23935 at 556.723 kb on - strand, within EX31_RS23935 at 556.723 kb on - strand, within EX31_RS23935 at 556.810 kb on - strand, within EX31_RS23935 at 556.810 kb on - strand, within EX31_RS23935 at 556.824 kb on - strand, within EX31_RS23935 at 556.824 kb on - strand, within EX31_RS23935 at 556.872 kb on - strand, within EX31_RS23935 at 556.981 kb on + strand, within EX31_RS23935 at 556.981 kb on + strand, within EX31_RS23935 at 556.981 kb on + strand, within EX31_RS23935 at 556.981 kb on + strand, within EX31_RS23935 at 557.154 kb on + strand at 557.154 kb on + strand at 557.154 kb on + strand at 557.242 kb on - strand at 557.255 kb on - strand at 557.758 kb on + strand, within EX31_RS23940 at 557.875 kb on - strand, within EX31_RS23940 at 557.913 kb on + strand, within EX31_RS23940 at 557.913 kb on + strand, within EX31_RS23940 at 557.913 kb on + strand, within EX31_RS23940 at 558.055 kb on + strand, within EX31_RS23940 at 558.055 kb on + strand, within EX31_RS23940
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 555,277 + EX31_RS23930 0.59 -0.5 555,278 - EX31_RS23930 0.59 -0.1 555,284 + EX31_RS23930 0.60 +0.7 555,306 - EX31_RS23930 0.61 +1.5 555,364 - EX31_RS23930 0.65 +0.1 555,522 + EX31_RS23930 0.76 -0.5 555,522 + EX31_RS23930 0.76 +0.2 555,522 + EX31_RS23930 0.76 +0.6 555,522 + EX31_RS23930 0.76 -1.2 555,522 + EX31_RS23930 0.76 +0.0 555,522 + EX31_RS23930 0.76 -0.8 555,522 + EX31_RS23930 0.76 -0.2 555,522 + EX31_RS23930 0.76 +2.8 555,523 - EX31_RS23930 0.76 -0.4 555,523 - EX31_RS23930 0.76 -0.9 555,523 - EX31_RS23930 0.76 -1.5 555,532 - EX31_RS23930 0.76 +1.0 555,695 + EX31_RS23930 0.87 -1.2 555,776 - +0.4 555,783 + +0.2 555,786 + -2.8 555,787 - -0.4 555,840 - +0.3 555,840 - +0.4 555,840 - +0.5 555,921 + -0.3 555,955 + -0.0 555,982 + +1.7 555,982 + -0.3 555,982 + +0.8 555,983 - +0.5 555,983 - +0.2 555,987 + +1.1 556,067 + +0.7 556,082 + -0.2 556,082 + -0.9 556,082 + +0.7 556,083 - +1.8 556,083 - +0.8 556,091 + -0.2 556,153 - -1.4 556,226 + +0.5 556,226 + +0.2 556,243 - -1.5 556,271 - -2.1 556,312 + -0.4 556,394 + EX31_RS23935 0.16 -1.2 556,394 + EX31_RS23935 0.16 -0.6 556,394 + EX31_RS23935 0.16 +0.1 556,395 - EX31_RS23935 0.16 +0.8 556,395 - EX31_RS23935 0.16 -1.0 556,430 + EX31_RS23935 0.19 -0.1 556,430 + EX31_RS23935 0.19 +0.2 556,431 - EX31_RS23935 0.19 -0.7 556,436 + EX31_RS23935 0.20 +0.2 556,500 + EX31_RS23935 0.27 +1.1 556,722 + EX31_RS23935 0.50 +1.7 556,722 + EX31_RS23935 0.50 -1.9 556,722 + EX31_RS23935 0.50 +0.7 556,722 + EX31_RS23935 0.50 -0.4 556,722 + EX31_RS23935 0.50 +0.2 556,722 + EX31_RS23935 0.50 +0.4 556,722 + EX31_RS23935 0.50 +1.0 556,723 - EX31_RS23935 0.51 +0.8 556,723 - EX31_RS23935 0.51 -0.1 556,723 - EX31_RS23935 0.51 +0.8 556,723 - EX31_RS23935 0.51 -0.0 556,723 - EX31_RS23935 0.51 -0.6 556,723 - EX31_RS23935 0.51 +0.3 556,810 - EX31_RS23935 0.60 +0.1 556,810 - EX31_RS23935 0.60 -2.1 556,824 - EX31_RS23935 0.61 -3.1 556,824 - EX31_RS23935 0.61 +0.8 556,872 - EX31_RS23935 0.66 +0.2 556,981 + EX31_RS23935 0.78 -0.3 556,981 + EX31_RS23935 0.78 +0.4 556,981 + EX31_RS23935 0.78 +0.2 556,981 + EX31_RS23935 0.78 +1.1 557,154 + -0.5 557,154 + -0.3 557,154 + -0.2 557,242 - +0.9 557,255 - -2.1 557,758 + EX31_RS23940 0.44 +1.1 557,875 - EX31_RS23940 0.54 +0.5 557,913 + EX31_RS23940 0.57 -1.0 557,913 + EX31_RS23940 0.57 -0.9 557,913 + EX31_RS23940 0.57 -1.0 558,055 + EX31_RS23940 0.69 -0.4 558,055 + EX31_RS23940 0.69 +0.2
Or see this region's nucleotide sequence