Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS18675 and EX31_RS18680 are separated by 18 nucleotides EX31_RS18680 and EX31_RS18685 are separated by 226 nucleotides
EX31_RS18675: EX31_RS18675 - galactose/methyl galactoside ABC transporter permease MglC, at 314,116 to 315,126
_RS18675
EX31_RS18680: EX31_RS18680 - galactose/methyl galactoside ABC transporter ATP-binding protein MglA, at 315,145 to 316,677
_RS18680
EX31_RS18685: EX31_RS18685 - galactose/glucose ABC transporter substrate-binding protein MglB, at 316,904 to 317,902
_RS18685
Position (kb) 315
316
317 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 314.182 kb on - strand at 314.187 kb on - strand at 314.187 kb on - strand at 314.187 kb on - strand at 314.196 kb on - strand at 314.213 kb on + strand at 314.213 kb on + strand at 314.213 kb on + strand at 314.214 kb on - strand at 314.214 kb on - strand at 314.336 kb on + strand, within EX31_RS18675 at 314.336 kb on + strand, within EX31_RS18675 at 314.336 kb on + strand, within EX31_RS18675 at 314.336 kb on + strand, within EX31_RS18675 at 314.337 kb on - strand, within EX31_RS18675 at 314.337 kb on - strand, within EX31_RS18675 at 314.337 kb on - strand, within EX31_RS18675 at 314.337 kb on - strand, within EX31_RS18675 at 314.337 kb on - strand, within EX31_RS18675 at 314.340 kb on + strand, within EX31_RS18675 at 314.340 kb on + strand, within EX31_RS18675 at 314.341 kb on - strand, within EX31_RS18675 at 314.341 kb on - strand, within EX31_RS18675 at 314.341 kb on - strand, within EX31_RS18675 at 314.341 kb on - strand, within EX31_RS18675 at 314.341 kb on - strand, within EX31_RS18675 at 314.341 kb on - strand, within EX31_RS18675 at 314.402 kb on + strand, within EX31_RS18675 at 314.402 kb on + strand, within EX31_RS18675 at 314.403 kb on - strand, within EX31_RS18675 at 314.423 kb on + strand, within EX31_RS18675 at 314.424 kb on - strand, within EX31_RS18675 at 314.424 kb on - strand, within EX31_RS18675 at 314.562 kb on - strand, within EX31_RS18675 at 314.562 kb on - strand, within EX31_RS18675 at 314.569 kb on - strand, within EX31_RS18675 at 314.569 kb on - strand, within EX31_RS18675 at 314.573 kb on + strand, within EX31_RS18675 at 314.573 kb on + strand, within EX31_RS18675 at 314.573 kb on + strand, within EX31_RS18675 at 314.574 kb on - strand, within EX31_RS18675 at 314.574 kb on - strand, within EX31_RS18675 at 314.574 kb on - strand, within EX31_RS18675 at 314.574 kb on - strand, within EX31_RS18675 at 314.574 kb on - strand, within EX31_RS18675 at 314.663 kb on + strand, within EX31_RS18675 at 314.670 kb on - strand, within EX31_RS18675 at 314.741 kb on + strand, within EX31_RS18675 at 314.751 kb on + strand, within EX31_RS18675 at 314.752 kb on - strand, within EX31_RS18675 at 314.752 kb on - strand, within EX31_RS18675 at 314.752 kb on - strand, within EX31_RS18675 at 314.754 kb on + strand, within EX31_RS18675 at 314.774 kb on - strand, within EX31_RS18675 at 314.787 kb on + strand, within EX31_RS18675 at 314.788 kb on - strand, within EX31_RS18675 at 314.968 kb on - strand, within EX31_RS18675 at 314.997 kb on + strand, within EX31_RS18675 at 314.998 kb on - strand, within EX31_RS18675 at 315.001 kb on + strand, within EX31_RS18675 at 315.001 kb on + strand, within EX31_RS18675 at 315.002 kb on - strand, within EX31_RS18675 at 315.089 kb on - strand at 315.130 kb on - strand at 315.173 kb on - strand at 315.283 kb on - strand at 315.323 kb on - strand, within EX31_RS18680 at 315.330 kb on - strand, within EX31_RS18680 at 315.385 kb on + strand, within EX31_RS18680 at 315.465 kb on + strand, within EX31_RS18680 at 315.466 kb on - strand, within EX31_RS18680 at 315.550 kb on - strand, within EX31_RS18680 at 315.555 kb on + strand, within EX31_RS18680 at 315.602 kb on + strand, within EX31_RS18680 at 315.608 kb on + strand, within EX31_RS18680 at 315.608 kb on + strand, within EX31_RS18680 at 315.608 kb on + strand, within EX31_RS18680 at 315.608 kb on + strand, within EX31_RS18680 at 315.681 kb on + strand, within EX31_RS18680 at 315.701 kb on - strand, within EX31_RS18680 at 315.753 kb on + strand, within EX31_RS18680 at 315.759 kb on + strand, within EX31_RS18680 at 315.982 kb on - strand, within EX31_RS18680 at 315.982 kb on - strand, within EX31_RS18680 at 316.045 kb on - strand, within EX31_RS18680 at 316.053 kb on + strand, within EX31_RS18680 at 316.054 kb on - strand, within EX31_RS18680 at 316.054 kb on - strand, within EX31_RS18680 at 316.055 kb on + strand, within EX31_RS18680 at 316.055 kb on + strand, within EX31_RS18680 at 316.056 kb on - strand, within EX31_RS18680 at 316.056 kb on - strand, within EX31_RS18680 at 316.056 kb on - strand, within EX31_RS18680 at 316.056 kb on - strand, within EX31_RS18680 at 316.056 kb on - strand, within EX31_RS18680 at 316.056 kb on - strand, within EX31_RS18680 at 316.056 kb on - strand, within EX31_RS18680 at 316.087 kb on - strand, within EX31_RS18680 at 316.169 kb on + strand, within EX31_RS18680 at 316.286 kb on + strand, within EX31_RS18680 at 316.309 kb on + strand, within EX31_RS18680 at 316.309 kb on + strand, within EX31_RS18680 at 316.310 kb on - strand, within EX31_RS18680 at 316.376 kb on - strand, within EX31_RS18680 at 316.435 kb on - strand, within EX31_RS18680 at 316.435 kb on - strand, within EX31_RS18680 at 316.479 kb on - strand, within EX31_RS18680 at 316.479 kb on - strand, within EX31_RS18680 at 316.499 kb on - strand, within EX31_RS18680 at 316.501 kb on + strand, within EX31_RS18680 at 316.502 kb on - strand, within EX31_RS18680 at 316.546 kb on - strand at 316.576 kb on - strand at 316.665 kb on + strand at 316.665 kb on + strand at 316.666 kb on - strand at 316.666 kb on - strand at 316.666 kb on - strand at 316.677 kb on + strand at 316.677 kb on + strand at 316.678 kb on - strand at 316.681 kb on + strand at 316.681 kb on + strand at 316.681 kb on + strand at 316.681 kb on + strand at 316.682 kb on - strand at 316.682 kb on - strand at 316.682 kb on - strand at 316.714 kb on - strand at 316.717 kb on - strand at 316.720 kb on - strand at 316.740 kb on - strand at 316.803 kb on - strand at 316.808 kb on + strand at 316.808 kb on + strand at 316.809 kb on - strand at 316.809 kb on - strand at 316.809 kb on - strand at 316.809 kb on - strand at 316.812 kb on + strand at 316.813 kb on - strand at 316.813 kb on - strand at 316.857 kb on - strand at 316.870 kb on - strand at 316.885 kb on + strand at 316.906 kb on - strand at 316.906 kb on - strand at 316.955 kb on - strand at 316.984 kb on + strand at 316.985 kb on - strand at 316.985 kb on - strand at 317.174 kb on + strand, within EX31_RS18685 at 317.174 kb on + strand, within EX31_RS18685 at 317.174 kb on + strand, within EX31_RS18685 at 317.175 kb on - strand, within EX31_RS18685 at 317.175 kb on - strand, within EX31_RS18685 at 317.175 kb on - strand, within EX31_RS18685 at 317.175 kb on - strand, within EX31_RS18685 at 317.352 kb on + strand, within EX31_RS18685 at 317.352 kb on + strand, within EX31_RS18685 at 317.352 kb on + strand, within EX31_RS18685 at 317.353 kb on - strand, within EX31_RS18685 at 317.353 kb on - strand, within EX31_RS18685 at 317.353 kb on - strand, within EX31_RS18685 at 317.356 kb on + strand, within EX31_RS18685 at 317.356 kb on + strand, within EX31_RS18685 at 317.356 kb on + strand, within EX31_RS18685 at 317.356 kb on + strand, within EX31_RS18685 at 317.356 kb on + strand, within EX31_RS18685 at 317.356 kb on + strand, within EX31_RS18685 at 317.356 kb on + strand, within EX31_RS18685 at 317.357 kb on - strand, within EX31_RS18685 at 317.357 kb on - strand, within EX31_RS18685 at 317.357 kb on - strand, within EX31_RS18685 at 317.357 kb on - strand, within EX31_RS18685 at 317.357 kb on - strand, within EX31_RS18685 at 317.406 kb on + strand, within EX31_RS18685 at 317.407 kb on - strand, within EX31_RS18685 at 317.407 kb on - strand, within EX31_RS18685 at 317.462 kb on - strand, within EX31_RS18685 at 317.514 kb on + strand, within EX31_RS18685 at 317.515 kb on - strand, within EX31_RS18685 at 317.515 kb on - strand, within EX31_RS18685 at 317.515 kb on - strand, within EX31_RS18685 at 317.515 kb on - strand, within EX31_RS18685 at 317.515 kb on - strand, within EX31_RS18685 at 317.517 kb on + strand, within EX31_RS18685 at 317.518 kb on - strand, within EX31_RS18685 at 317.518 kb on - strand, within EX31_RS18685 at 317.518 kb on - strand, within EX31_RS18685 at 317.518 kb on - strand, within EX31_RS18685 at 317.566 kb on - strand, within EX31_RS18685 at 317.672 kb on - strand, within EX31_RS18685
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 314,182 - -0.1 314,187 - -0.4 314,187 - -0.9 314,187 - -0.4 314,196 - +0.2 314,213 + -1.2 314,213 + +0.4 314,213 + +0.7 314,214 - -0.1 314,214 - +0.2 314,336 + EX31_RS18675 0.22 -1.1 314,336 + EX31_RS18675 0.22 -2.7 314,336 + EX31_RS18675 0.22 +0.5 314,336 + EX31_RS18675 0.22 -0.1 314,337 - EX31_RS18675 0.22 +0.5 314,337 - EX31_RS18675 0.22 +0.1 314,337 - EX31_RS18675 0.22 +1.4 314,337 - EX31_RS18675 0.22 -1.5 314,337 - EX31_RS18675 0.22 -1.7 314,340 + EX31_RS18675 0.22 +0.0 314,340 + EX31_RS18675 0.22 +1.0 314,341 - EX31_RS18675 0.22 +0.4 314,341 - EX31_RS18675 0.22 -1.0 314,341 - EX31_RS18675 0.22 -2.7 314,341 - EX31_RS18675 0.22 -0.3 314,341 - EX31_RS18675 0.22 -0.6 314,341 - EX31_RS18675 0.22 -3.8 314,402 + EX31_RS18675 0.28 +0.7 314,402 + EX31_RS18675 0.28 +0.2 314,403 - EX31_RS18675 0.28 -0.6 314,423 + EX31_RS18675 0.30 -1.7 314,424 - EX31_RS18675 0.30 -0.8 314,424 - EX31_RS18675 0.30 -0.3 314,562 - EX31_RS18675 0.44 +0.6 314,562 - EX31_RS18675 0.44 -0.1 314,569 - EX31_RS18675 0.45 -2.2 314,569 - EX31_RS18675 0.45 -2.8 314,573 + EX31_RS18675 0.45 -0.9 314,573 + EX31_RS18675 0.45 -1.1 314,573 + EX31_RS18675 0.45 +0.9 314,574 - EX31_RS18675 0.45 +0.1 314,574 - EX31_RS18675 0.45 +1.1 314,574 - EX31_RS18675 0.45 -0.7 314,574 - EX31_RS18675 0.45 -1.9 314,574 - EX31_RS18675 0.45 +0.2 314,663 + EX31_RS18675 0.54 -0.8 314,670 - EX31_RS18675 0.55 -0.2 314,741 + EX31_RS18675 0.62 +0.3 314,751 + EX31_RS18675 0.63 +1.0 314,752 - EX31_RS18675 0.63 +0.9 314,752 - EX31_RS18675 0.63 -0.0 314,752 - EX31_RS18675 0.63 -0.3 314,754 + EX31_RS18675 0.63 +1.9 314,774 - EX31_RS18675 0.65 +0.1 314,787 + EX31_RS18675 0.66 -0.5 314,788 - EX31_RS18675 0.66 +0.1 314,968 - EX31_RS18675 0.84 +0.5 314,997 + EX31_RS18675 0.87 +1.5 314,998 - EX31_RS18675 0.87 -0.2 315,001 + EX31_RS18675 0.88 +1.5 315,001 + EX31_RS18675 0.88 +0.7 315,002 - EX31_RS18675 0.88 +0.5 315,089 - +0.5 315,130 - -0.5 315,173 - +0.2 315,283 - -0.3 315,323 - EX31_RS18680 0.12 +0.1 315,330 - EX31_RS18680 0.12 -1.5 315,385 + EX31_RS18680 0.16 -1.2 315,465 + EX31_RS18680 0.21 -0.9 315,466 - EX31_RS18680 0.21 +0.8 315,550 - EX31_RS18680 0.26 +0.4 315,555 + EX31_RS18680 0.27 -1.0 315,602 + EX31_RS18680 0.30 -0.3 315,608 + EX31_RS18680 0.30 +0.9 315,608 + EX31_RS18680 0.30 +0.6 315,608 + EX31_RS18680 0.30 +0.3 315,608 + EX31_RS18680 0.30 +0.3 315,681 + EX31_RS18680 0.35 +0.9 315,701 - EX31_RS18680 0.36 +0.7 315,753 + EX31_RS18680 0.40 -0.2 315,759 + EX31_RS18680 0.40 -1.0 315,982 - EX31_RS18680 0.55 -1.5 315,982 - EX31_RS18680 0.55 -1.5 316,045 - EX31_RS18680 0.59 -0.0 316,053 + EX31_RS18680 0.59 +0.6 316,054 - EX31_RS18680 0.59 -0.3 316,054 - EX31_RS18680 0.59 -0.8 316,055 + EX31_RS18680 0.59 +0.5 316,055 + EX31_RS18680 0.59 -0.7 316,056 - EX31_RS18680 0.59 +1.5 316,056 - EX31_RS18680 0.59 -0.6 316,056 - EX31_RS18680 0.59 +0.7 316,056 - EX31_RS18680 0.59 +1.1 316,056 - EX31_RS18680 0.59 -0.1 316,056 - EX31_RS18680 0.59 +0.3 316,056 - EX31_RS18680 0.59 -0.2 316,087 - EX31_RS18680 0.61 -0.5 316,169 + EX31_RS18680 0.67 -0.4 316,286 + EX31_RS18680 0.74 +0.9 316,309 + EX31_RS18680 0.76 +0.4 316,309 + EX31_RS18680 0.76 -0.2 316,310 - EX31_RS18680 0.76 +0.4 316,376 - EX31_RS18680 0.80 +0.0 316,435 - EX31_RS18680 0.84 +0.8 316,435 - EX31_RS18680 0.84 -0.9 316,479 - EX31_RS18680 0.87 +0.6 316,479 - EX31_RS18680 0.87 -0.1 316,499 - EX31_RS18680 0.88 +0.4 316,501 + EX31_RS18680 0.88 +1.7 316,502 - EX31_RS18680 0.89 -0.1 316,546 - +0.6 316,576 - -0.6 316,665 + -0.1 316,665 + -0.0 316,666 - +0.3 316,666 - +1.0 316,666 - -0.0 316,677 + +1.7 316,677 + +1.0 316,678 - +1.5 316,681 + -0.8 316,681 + -1.5 316,681 + +0.1 316,681 + -2.2 316,682 - -0.2 316,682 - +1.2 316,682 - -1.6 316,714 - -0.9 316,717 - +0.3 316,720 - -0.4 316,740 - -0.3 316,803 - -0.3 316,808 + +0.6 316,808 + +0.6 316,809 - +0.4 316,809 - -0.8 316,809 - -1.1 316,809 - +0.0 316,812 + +1.1 316,813 - +0.9 316,813 - -0.1 316,857 - +0.2 316,870 - +0.3 316,885 + -0.5 316,906 - -0.6 316,906 - +0.4 316,955 - +0.5 316,984 + -1.6 316,985 - +0.6 316,985 - +0.4 317,174 + EX31_RS18685 0.27 -0.5 317,174 + EX31_RS18685 0.27 +0.1 317,174 + EX31_RS18685 0.27 +0.9 317,175 - EX31_RS18685 0.27 -0.7 317,175 - EX31_RS18685 0.27 -0.8 317,175 - EX31_RS18685 0.27 +0.3 317,175 - EX31_RS18685 0.27 +0.6 317,352 + EX31_RS18685 0.45 -2.1 317,352 + EX31_RS18685 0.45 +0.8 317,352 + EX31_RS18685 0.45 -0.8 317,353 - EX31_RS18685 0.45 -1.4 317,353 - EX31_RS18685 0.45 -0.1 317,353 - EX31_RS18685 0.45 -0.2 317,356 + EX31_RS18685 0.45 +0.1 317,356 + EX31_RS18685 0.45 +0.0 317,356 + EX31_RS18685 0.45 -1.9 317,356 + EX31_RS18685 0.45 -1.0 317,356 + EX31_RS18685 0.45 +1.4 317,356 + EX31_RS18685 0.45 -1.0 317,356 + EX31_RS18685 0.45 +1.3 317,357 - EX31_RS18685 0.45 -1.8 317,357 - EX31_RS18685 0.45 -2.4 317,357 - EX31_RS18685 0.45 +0.2 317,357 - EX31_RS18685 0.45 +0.8 317,357 - EX31_RS18685 0.45 +0.2 317,406 + EX31_RS18685 0.50 -3.0 317,407 - EX31_RS18685 0.50 +1.5 317,407 - EX31_RS18685 0.50 -0.0 317,462 - EX31_RS18685 0.56 -1.0 317,514 + EX31_RS18685 0.61 -0.7 317,515 - EX31_RS18685 0.61 +0.6 317,515 - EX31_RS18685 0.61 +0.2 317,515 - EX31_RS18685 0.61 +0.9 317,515 - EX31_RS18685 0.61 +0.2 317,515 - EX31_RS18685 0.61 -1.0 317,517 + EX31_RS18685 0.61 -1.4 317,518 - EX31_RS18685 0.61 +0.1 317,518 - EX31_RS18685 0.61 -0.7 317,518 - EX31_RS18685 0.61 -2.0 317,518 - EX31_RS18685 0.61 -0.2 317,566 - EX31_RS18685 0.66 +0.5 317,672 - EX31_RS18685 0.77 +0.2
Or see this region's nucleotide sequence