Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS17900 and EX31_RS17905 are separated by 4 nucleotides EX31_RS17905 and EX31_RS17910 are separated by 50 nucleotides
EX31_RS17900: EX31_RS17900 - gamma-glutamyl-gamma-aminobutyrate hydrolase, at 139,677 to 140,480
_RS17900
EX31_RS17905: EX31_RS17905 - HTH-type transcriptional regulator PuuR, at 140,485 to 141,042
_RS17905
EX31_RS17910: EX31_RS17910 - FAD-binding oxidoreductase, at 141,093 to 142,406
_RS17910
Position (kb) 140
141
142 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 139.511 kb on + strand at 139.518 kb on - strand at 139.518 kb on - strand at 139.523 kb on + strand at 139.524 kb on - strand at 139.524 kb on - strand at 139.528 kb on - strand at 139.540 kb on + strand at 139.540 kb on + strand at 139.540 kb on + strand at 139.540 kb on + strand at 139.555 kb on + strand at 139.555 kb on + strand at 139.555 kb on + strand at 139.555 kb on + strand at 139.555 kb on + strand at 139.555 kb on + strand at 139.556 kb on - strand at 139.556 kb on - strand at 139.586 kb on - strand at 139.597 kb on + strand at 139.597 kb on + strand at 139.597 kb on + strand at 139.597 kb on + strand at 139.597 kb on + strand at 139.597 kb on + strand at 139.597 kb on + strand at 139.597 kb on + strand at 139.597 kb on + strand at 139.598 kb on - strand at 139.598 kb on - strand at 139.598 kb on - strand at 139.598 kb on - strand at 139.598 kb on - strand at 139.598 kb on - strand at 139.598 kb on - strand at 139.599 kb on + strand at 139.599 kb on + strand at 139.599 kb on + strand at 139.599 kb on + strand at 139.599 kb on + strand at 139.599 kb on + strand at 139.599 kb on + strand at 139.599 kb on + strand at 139.599 kb on + strand at 139.599 kb on + strand at 139.599 kb on + strand at 139.599 kb on + strand at 139.599 kb on + strand at 139.599 kb on + strand at 139.599 kb on + strand at 139.599 kb on + strand at 139.599 kb on + strand at 139.599 kb on + strand at 139.599 kb on + strand at 139.599 kb on + strand at 139.599 kb on + strand at 139.600 kb on - strand at 139.600 kb on - strand at 139.600 kb on - strand at 139.600 kb on - strand at 139.600 kb on - strand at 139.600 kb on - strand at 139.600 kb on - strand at 139.600 kb on - strand at 139.600 kb on - strand at 139.608 kb on + strand at 139.639 kb on + strand at 139.639 kb on + strand at 139.639 kb on + strand at 139.639 kb on + strand at 139.639 kb on + strand at 139.639 kb on + strand at 139.640 kb on - strand at 139.640 kb on - strand at 139.673 kb on + strand at 139.676 kb on + strand at 139.688 kb on - strand at 139.722 kb on + strand at 139.751 kb on + strand at 139.751 kb on + strand at 139.797 kb on + strand, within EX31_RS17900 at 139.797 kb on + strand, within EX31_RS17900 at 139.798 kb on - strand, within EX31_RS17900 at 139.873 kb on + strand, within EX31_RS17900 at 140.121 kb on + strand, within EX31_RS17900 at 140.121 kb on + strand, within EX31_RS17900 at 140.121 kb on + strand, within EX31_RS17900 at 140.121 kb on + strand, within EX31_RS17900 at 140.121 kb on + strand, within EX31_RS17900 at 140.122 kb on - strand, within EX31_RS17900 at 140.123 kb on + strand, within EX31_RS17900 at 140.123 kb on + strand, within EX31_RS17900 at 140.166 kb on + strand, within EX31_RS17900 at 140.166 kb on + strand, within EX31_RS17900 at 140.185 kb on + strand, within EX31_RS17900 at 140.185 kb on + strand, within EX31_RS17900 at 140.186 kb on - strand, within EX31_RS17900 at 140.186 kb on - strand, within EX31_RS17900 at 140.189 kb on + strand, within EX31_RS17900 at 140.189 kb on + strand, within EX31_RS17900 at 140.189 kb on + strand, within EX31_RS17900 at 140.218 kb on + strand, within EX31_RS17900 at 140.218 kb on + strand, within EX31_RS17900 at 140.219 kb on - strand, within EX31_RS17900 at 140.219 kb on - strand, within EX31_RS17900 at 140.229 kb on + strand, within EX31_RS17900 at 140.230 kb on - strand, within EX31_RS17900 at 140.430 kb on - strand at 140.635 kb on - strand, within EX31_RS17905 at 140.697 kb on + strand, within EX31_RS17905 at 140.698 kb on - strand, within EX31_RS17905 at 140.704 kb on - strand, within EX31_RS17905 at 140.725 kb on - strand, within EX31_RS17905 at 140.739 kb on - strand, within EX31_RS17905 at 140.824 kb on + strand, within EX31_RS17905 at 140.824 kb on + strand, within EX31_RS17905 at 140.825 kb on - strand, within EX31_RS17905 at 140.825 kb on - strand, within EX31_RS17905 at 140.888 kb on + strand, within EX31_RS17905 at 140.950 kb on + strand, within EX31_RS17905 at 140.950 kb on + strand, within EX31_RS17905 at 140.958 kb on + strand, within EX31_RS17905 at 140.976 kb on + strand, within EX31_RS17905 at 140.976 kb on + strand, within EX31_RS17905 at 140.976 kb on + strand, within EX31_RS17905 at 140.977 kb on - strand, within EX31_RS17905 at 140.977 kb on - strand, within EX31_RS17905 at 141.024 kb on + strand at 141.024 kb on + strand at 141.024 kb on + strand at 141.024 kb on + strand at 141.025 kb on - strand at 141.030 kb on + strand at 141.033 kb on + strand at 141.033 kb on + strand at 141.033 kb on + strand at 141.033 kb on + strand at 141.033 kb on + strand at 141.033 kb on + strand at 141.034 kb on - strand at 141.034 kb on - strand at 141.034 kb on - strand at 141.034 kb on - strand at 141.034 kb on - strand at 141.034 kb on - strand at 141.040 kb on + strand at 141.040 kb on + strand at 141.040 kb on + strand at 141.041 kb on - strand at 141.041 kb on - strand at 141.147 kb on + strand at 141.147 kb on + strand at 141.147 kb on + strand at 141.147 kb on + strand at 141.147 kb on + strand at 141.147 kb on + strand at 141.147 kb on + strand at 141.148 kb on - strand at 141.200 kb on + strand at 141.200 kb on + strand at 141.201 kb on - strand at 141.201 kb on - strand at 141.256 kb on + strand, within EX31_RS17910 at 141.256 kb on + strand, within EX31_RS17910 at 141.256 kb on + strand, within EX31_RS17910 at 141.256 kb on + strand, within EX31_RS17910 at 141.256 kb on + strand, within EX31_RS17910 at 141.256 kb on + strand, within EX31_RS17910 at 141.256 kb on + strand, within EX31_RS17910 at 141.257 kb on - strand, within EX31_RS17910 at 141.257 kb on - strand, within EX31_RS17910 at 141.257 kb on - strand, within EX31_RS17910 at 141.257 kb on - strand, within EX31_RS17910 at 141.258 kb on + strand, within EX31_RS17910 at 141.258 kb on + strand, within EX31_RS17910 at 141.258 kb on + strand, within EX31_RS17910 at 141.258 kb on + strand, within EX31_RS17910 at 141.258 kb on + strand, within EX31_RS17910 at 141.259 kb on - strand, within EX31_RS17910 at 141.259 kb on - strand, within EX31_RS17910 at 141.259 kb on - strand, within EX31_RS17910 at 141.276 kb on + strand, within EX31_RS17910 at 141.277 kb on - strand, within EX31_RS17910 at 141.354 kb on + strand, within EX31_RS17910 at 141.355 kb on - strand, within EX31_RS17910 at 141.355 kb on - strand, within EX31_RS17910 at 141.407 kb on + strand, within EX31_RS17910 at 141.407 kb on + strand, within EX31_RS17910 at 141.408 kb on - strand, within EX31_RS17910 at 141.408 kb on - strand, within EX31_RS17910 at 141.408 kb on - strand, within EX31_RS17910 at 141.466 kb on - strand, within EX31_RS17910 at 141.466 kb on - strand, within EX31_RS17910 at 141.497 kb on + strand, within EX31_RS17910 at 141.512 kb on - strand, within EX31_RS17910 at 141.572 kb on + strand, within EX31_RS17910 at 141.725 kb on + strand, within EX31_RS17910 at 141.725 kb on + strand, within EX31_RS17910 at 141.726 kb on - strand, within EX31_RS17910 at 141.726 kb on - strand, within EX31_RS17910 at 141.726 kb on - strand, within EX31_RS17910 at 141.727 kb on + strand, within EX31_RS17910 at 141.727 kb on + strand, within EX31_RS17910 at 141.728 kb on - strand, within EX31_RS17910 at 141.728 kb on - strand, within EX31_RS17910 at 141.728 kb on - strand, within EX31_RS17910 at 141.776 kb on - strand, within EX31_RS17910 at 141.810 kb on + strand, within EX31_RS17910 at 141.811 kb on - strand, within EX31_RS17910 at 141.811 kb on - strand, within EX31_RS17910 at 141.811 kb on - strand, within EX31_RS17910 at 141.811 kb on - strand, within EX31_RS17910 at 141.811 kb on - strand, within EX31_RS17910 at 141.811 kb on - strand, within EX31_RS17910 at 141.834 kb on + strand, within EX31_RS17910 at 141.835 kb on - strand, within EX31_RS17910 at 141.952 kb on - strand, within EX31_RS17910 at 141.972 kb on + strand, within EX31_RS17910 at 141.972 kb on + strand, within EX31_RS17910 at 141.973 kb on - strand, within EX31_RS17910 at 141.973 kb on - strand, within EX31_RS17910 at 141.973 kb on - strand, within EX31_RS17910 at 141.984 kb on + strand, within EX31_RS17910
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 139,511 + -0.2 139,518 - -0.1 139,518 - -1.9 139,523 + +0.8 139,524 - +0.6 139,524 - -2.1 139,528 - +0.4 139,540 + +0.2 139,540 + +0.2 139,540 + +0.2 139,540 + +0.2 139,555 + +0.7 139,555 + +0.4 139,555 + +0.6 139,555 + -0.5 139,555 + -0.6 139,555 + -2.0 139,556 - -0.1 139,556 - +0.4 139,586 - +1.6 139,597 + -0.0 139,597 + +0.1 139,597 + -0.5 139,597 + +0.1 139,597 + +0.8 139,597 + +1.3 139,597 + +0.3 139,597 + +0.6 139,597 + +0.1 139,598 - -0.8 139,598 - -1.8 139,598 - +0.2 139,598 - -0.5 139,598 - -0.4 139,598 - -0.0 139,598 - +0.9 139,599 + -0.3 139,599 + +0.1 139,599 + +0.7 139,599 + +1.1 139,599 + -0.1 139,599 + -0.1 139,599 + +0.4 139,599 + -0.1 139,599 + +0.1 139,599 + +0.2 139,599 + -0.7 139,599 + -0.2 139,599 + -0.5 139,599 + -1.0 139,599 + +0.2 139,599 + -1.2 139,599 + -0.3 139,599 + -0.2 139,599 + -0.8 139,599 + +0.8 139,599 + +0.3 139,600 - -0.6 139,600 - -0.1 139,600 - +1.4 139,600 - -0.1 139,600 - +0.6 139,600 - -0.3 139,600 - -1.6 139,600 - +0.7 139,600 - +0.6 139,608 + -0.2 139,639 + -1.0 139,639 + +0.7 139,639 + +2.4 139,639 + +0.3 139,639 + -1.0 139,639 + -0.2 139,640 - +0.3 139,640 - -0.7 139,673 + +0.4 139,676 + -0.5 139,688 - -0.0 139,722 + -0.5 139,751 + +0.1 139,751 + +0.8 139,797 + EX31_RS17900 0.15 +0.7 139,797 + EX31_RS17900 0.15 +0.6 139,798 - EX31_RS17900 0.15 -0.1 139,873 + EX31_RS17900 0.24 -3.0 140,121 + EX31_RS17900 0.55 +0.2 140,121 + EX31_RS17900 0.55 -2.0 140,121 + EX31_RS17900 0.55 -0.1 140,121 + EX31_RS17900 0.55 +0.2 140,121 + EX31_RS17900 0.55 -1.1 140,122 - EX31_RS17900 0.55 -1.0 140,123 + EX31_RS17900 0.55 +0.9 140,123 + EX31_RS17900 0.55 +0.5 140,166 + EX31_RS17900 0.61 -0.8 140,166 + EX31_RS17900 0.61 +1.5 140,185 + EX31_RS17900 0.63 +0.1 140,185 + EX31_RS17900 0.63 +0.2 140,186 - EX31_RS17900 0.63 +0.4 140,186 - EX31_RS17900 0.63 -0.4 140,189 + EX31_RS17900 0.64 +0.6 140,189 + EX31_RS17900 0.64 -0.7 140,189 + EX31_RS17900 0.64 -0.7 140,218 + EX31_RS17900 0.67 -1.1 140,218 + EX31_RS17900 0.67 +0.1 140,219 - EX31_RS17900 0.67 -1.1 140,219 - EX31_RS17900 0.67 -1.7 140,229 + EX31_RS17900 0.69 +0.4 140,230 - EX31_RS17900 0.69 +0.7 140,430 - +0.6 140,635 - EX31_RS17905 0.27 +0.4 140,697 + EX31_RS17905 0.38 +0.1 140,698 - EX31_RS17905 0.38 -0.1 140,704 - EX31_RS17905 0.39 -0.3 140,725 - EX31_RS17905 0.43 +0.9 140,739 - EX31_RS17905 0.46 -1.0 140,824 + EX31_RS17905 0.61 -0.1 140,824 + EX31_RS17905 0.61 -0.3 140,825 - EX31_RS17905 0.61 -1.2 140,825 - EX31_RS17905 0.61 -0.6 140,888 + EX31_RS17905 0.72 +0.1 140,950 + EX31_RS17905 0.83 -0.3 140,950 + EX31_RS17905 0.83 +0.1 140,958 + EX31_RS17905 0.85 +0.4 140,976 + EX31_RS17905 0.88 +0.4 140,976 + EX31_RS17905 0.88 -0.2 140,976 + EX31_RS17905 0.88 +0.2 140,977 - EX31_RS17905 0.88 -0.3 140,977 - EX31_RS17905 0.88 -0.8 141,024 + -0.7 141,024 + +0.2 141,024 + -0.4 141,024 + -0.5 141,025 - -0.8 141,030 + +0.3 141,033 + -0.1 141,033 + -0.1 141,033 + -0.0 141,033 + +0.2 141,033 + -0.5 141,033 + +0.8 141,034 - +1.3 141,034 - +0.5 141,034 - -0.1 141,034 - -0.7 141,034 - +1.9 141,034 - +0.1 141,040 + +0.0 141,040 + +0.6 141,040 + -0.9 141,041 - -0.9 141,041 - -0.7 141,147 + +0.3 141,147 + -0.2 141,147 + +0.5 141,147 + -0.3 141,147 + -3.2 141,147 + +0.8 141,147 + -0.6 141,148 - +0.1 141,200 + +1.1 141,200 + -0.2 141,201 - +1.4 141,201 - -0.2 141,256 + EX31_RS17910 0.12 -0.0 141,256 + EX31_RS17910 0.12 -0.3 141,256 + EX31_RS17910 0.12 -0.3 141,256 + EX31_RS17910 0.12 -2.3 141,256 + EX31_RS17910 0.12 -1.2 141,256 + EX31_RS17910 0.12 +0.1 141,256 + EX31_RS17910 0.12 -0.3 141,257 - EX31_RS17910 0.12 -1.3 141,257 - EX31_RS17910 0.12 +0.7 141,257 - EX31_RS17910 0.12 -0.2 141,257 - EX31_RS17910 0.12 -0.1 141,258 + EX31_RS17910 0.13 -1.1 141,258 + EX31_RS17910 0.13 -0.0 141,258 + EX31_RS17910 0.13 +0.1 141,258 + EX31_RS17910 0.13 -2.4 141,258 + EX31_RS17910 0.13 +0.4 141,259 - EX31_RS17910 0.13 -0.2 141,259 - EX31_RS17910 0.13 +3.1 141,259 - EX31_RS17910 0.13 +1.0 141,276 + EX31_RS17910 0.14 +0.5 141,277 - EX31_RS17910 0.14 -0.2 141,354 + EX31_RS17910 0.20 +1.2 141,355 - EX31_RS17910 0.20 -1.6 141,355 - EX31_RS17910 0.20 -0.6 141,407 + EX31_RS17910 0.24 -0.7 141,407 + EX31_RS17910 0.24 -0.1 141,408 - EX31_RS17910 0.24 +0.2 141,408 - EX31_RS17910 0.24 +0.4 141,408 - EX31_RS17910 0.24 -1.6 141,466 - EX31_RS17910 0.28 +0.0 141,466 - EX31_RS17910 0.28 -0.3 141,497 + EX31_RS17910 0.31 -0.6 141,512 - EX31_RS17910 0.32 +0.4 141,572 + EX31_RS17910 0.36 +0.4 141,725 + EX31_RS17910 0.48 -0.4 141,725 + EX31_RS17910 0.48 +0.3 141,726 - EX31_RS17910 0.48 -1.8 141,726 - EX31_RS17910 0.48 +0.5 141,726 - EX31_RS17910 0.48 -0.1 141,727 + EX31_RS17910 0.48 +0.5 141,727 + EX31_RS17910 0.48 +0.2 141,728 - EX31_RS17910 0.48 +1.4 141,728 - EX31_RS17910 0.48 -0.8 141,728 - EX31_RS17910 0.48 +0.1 141,776 - EX31_RS17910 0.52 -3.1 141,810 + EX31_RS17910 0.55 +0.2 141,811 - EX31_RS17910 0.55 -0.2 141,811 - EX31_RS17910 0.55 -1.4 141,811 - EX31_RS17910 0.55 -1.5 141,811 - EX31_RS17910 0.55 +0.7 141,811 - EX31_RS17910 0.55 +0.5 141,811 - EX31_RS17910 0.55 +1.9 141,834 + EX31_RS17910 0.56 -1.8 141,835 - EX31_RS17910 0.56 -0.3 141,952 - EX31_RS17910 0.65 +1.1 141,972 + EX31_RS17910 0.67 +0.2 141,972 + EX31_RS17910 0.67 +0.3 141,973 - EX31_RS17910 0.67 -1.3 141,973 - EX31_RS17910 0.67 -0.6 141,973 - EX31_RS17910 0.67 -1.2 141,984 + EX31_RS17910 0.68 -0.8
Or see this region's nucleotide sequence