Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS16705 and EX31_RS16710 overlap by 4 nucleotides EX31_RS16710 and EX31_RS16715 are separated by 4 nucleotides EX31_RS16715 and EX31_RS16720 are separated by 261 nucleotides
EX31_RS16705: EX31_RS16705 - ABC transporter permease, at 24,077 to 24,784
_RS16705
EX31_RS16710: EX31_RS16710 - ABC transporter permease subunit, at 24,781 to 25,431
_RS16710
EX31_RS16715: EX31_RS16715 - ATP-binding cassette domain-containing protein, at 25,436 to 26,530
_RS16715
EX31_RS16720: EX31_RS16720 - helix-turn-helix domain-containing protein, at 26,792 to 27,640
_RS16720
Position (kb) 25
26
27 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 24.456 kb on + strand, within EX31_RS16705 at 24.457 kb on - strand, within EX31_RS16705 at 24.458 kb on + strand, within EX31_RS16705 at 24.518 kb on - strand, within EX31_RS16705 at 24.540 kb on - strand, within EX31_RS16705 at 24.618 kb on - strand, within EX31_RS16705 at 24.618 kb on - strand, within EX31_RS16705 at 24.620 kb on + strand, within EX31_RS16705 at 24.652 kb on - strand, within EX31_RS16705 at 24.652 kb on - strand, within EX31_RS16705 at 24.706 kb on - strand, within EX31_RS16705 at 24.778 kb on + strand at 24.907 kb on + strand, within EX31_RS16710 at 24.907 kb on + strand, within EX31_RS16710 at 24.924 kb on + strand, within EX31_RS16710 at 25.005 kb on + strand, within EX31_RS16710 at 25.006 kb on - strand, within EX31_RS16710 at 25.006 kb on - strand, within EX31_RS16710 at 25.006 kb on - strand, within EX31_RS16710 at 25.189 kb on - strand, within EX31_RS16710 at 25.223 kb on - strand, within EX31_RS16710 at 25.232 kb on - strand, within EX31_RS16710 at 25.264 kb on + strand, within EX31_RS16710 at 25.268 kb on - strand, within EX31_RS16710 at 25.268 kb on - strand, within EX31_RS16710 at 25.268 kb on - strand, within EX31_RS16710 at 25.326 kb on + strand, within EX31_RS16710 at 25.348 kb on + strand, within EX31_RS16710 at 25.367 kb on + strand at 25.368 kb on - strand at 25.390 kb on + strand at 25.414 kb on + strand at 25.544 kb on + strand at 25.545 kb on - strand at 25.607 kb on - strand, within EX31_RS16715 at 25.607 kb on - strand, within EX31_RS16715 at 25.650 kb on + strand, within EX31_RS16715 at 25.651 kb on - strand, within EX31_RS16715 at 25.768 kb on + strand, within EX31_RS16715 at 25.768 kb on + strand, within EX31_RS16715 at 25.798 kb on + strand, within EX31_RS16715 at 25.856 kb on - strand, within EX31_RS16715 at 25.856 kb on - strand, within EX31_RS16715 at 25.856 kb on - strand, within EX31_RS16715 at 25.856 kb on - strand, within EX31_RS16715 at 25.961 kb on - strand, within EX31_RS16715 at 25.964 kb on - strand, within EX31_RS16715 at 25.964 kb on - strand, within EX31_RS16715 at 26.177 kb on + strand, within EX31_RS16715 at 26.292 kb on + strand, within EX31_RS16715 at 26.292 kb on + strand, within EX31_RS16715 at 26.298 kb on - strand, within EX31_RS16715 at 26.438 kb on - strand at 26.441 kb on - strand at 26.441 kb on - strand at 26.441 kb on - strand at 26.441 kb on - strand at 26.441 kb on - strand at 26.511 kb on - strand at 26.604 kb on - strand at 26.613 kb on + strand at 26.884 kb on - strand, within EX31_RS16720 at 26.956 kb on + strand, within EX31_RS16720 at 27.103 kb on + strand, within EX31_RS16720 at 27.104 kb on - strand, within EX31_RS16720 at 27.104 kb on - strand, within EX31_RS16720 at 27.106 kb on - strand, within EX31_RS16720 at 27.186 kb on - strand, within EX31_RS16720 at 27.186 kb on - strand, within EX31_RS16720 at 27.273 kb on - strand, within EX31_RS16720 at 27.433 kb on + strand, within EX31_RS16720 at 27.434 kb on - strand, within EX31_RS16720 at 27.435 kb on + strand, within EX31_RS16720 at 27.435 kb on + strand, within EX31_RS16720 at 27.436 kb on - strand, within EX31_RS16720 at 27.436 kb on - strand, within EX31_RS16720 at 27.436 kb on - strand, within EX31_RS16720
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 24,456 + EX31_RS16705 0.54 -0.9 24,457 - EX31_RS16705 0.54 +1.1 24,458 + EX31_RS16705 0.54 +1.3 24,518 - EX31_RS16705 0.62 -0.3 24,540 - EX31_RS16705 0.65 +0.1 24,618 - EX31_RS16705 0.76 -0.1 24,618 - EX31_RS16705 0.76 +0.2 24,620 + EX31_RS16705 0.77 -0.5 24,652 - EX31_RS16705 0.81 -0.6 24,652 - EX31_RS16705 0.81 +0.2 24,706 - EX31_RS16705 0.89 +0.5 24,778 + +0.2 24,907 + EX31_RS16710 0.19 -1.4 24,907 + EX31_RS16710 0.19 +1.2 24,924 + EX31_RS16710 0.22 -0.5 25,005 + EX31_RS16710 0.34 -1.2 25,006 - EX31_RS16710 0.35 -1.5 25,006 - EX31_RS16710 0.35 -0.1 25,006 - EX31_RS16710 0.35 -0.5 25,189 - EX31_RS16710 0.63 -0.5 25,223 - EX31_RS16710 0.68 -0.3 25,232 - EX31_RS16710 0.69 +1.4 25,264 + EX31_RS16710 0.74 +1.0 25,268 - EX31_RS16710 0.75 +0.3 25,268 - EX31_RS16710 0.75 -0.9 25,268 - EX31_RS16710 0.75 +0.3 25,326 + EX31_RS16710 0.84 -1.1 25,348 + EX31_RS16710 0.87 -2.4 25,367 + +1.4 25,368 - -0.1 25,390 + -0.4 25,414 + -2.6 25,544 + +1.3 25,545 - +0.3 25,607 - EX31_RS16715 0.16 -0.2 25,607 - EX31_RS16715 0.16 +1.3 25,650 + EX31_RS16715 0.20 +0.3 25,651 - EX31_RS16715 0.20 -1.5 25,768 + EX31_RS16715 0.30 -0.3 25,768 + EX31_RS16715 0.30 +0.9 25,798 + EX31_RS16715 0.33 -1.0 25,856 - EX31_RS16715 0.38 -1.3 25,856 - EX31_RS16715 0.38 +0.3 25,856 - EX31_RS16715 0.38 -1.8 25,856 - EX31_RS16715 0.38 -2.1 25,961 - EX31_RS16715 0.48 -0.4 25,964 - EX31_RS16715 0.48 -1.6 25,964 - EX31_RS16715 0.48 -0.7 26,177 + EX31_RS16715 0.68 -3.2 26,292 + EX31_RS16715 0.78 +0.5 26,292 + EX31_RS16715 0.78 -0.3 26,298 - EX31_RS16715 0.79 -2.5 26,438 - +1.0 26,441 - -1.1 26,441 - +1.4 26,441 - +0.3 26,441 - -1.2 26,441 - +0.1 26,511 - -1.3 26,604 - -0.2 26,613 + -0.3 26,884 - EX31_RS16720 0.11 +0.6 26,956 + EX31_RS16720 0.19 -0.7 27,103 + EX31_RS16720 0.37 +1.0 27,104 - EX31_RS16720 0.37 -1.0 27,104 - EX31_RS16720 0.37 +0.2 27,106 - EX31_RS16720 0.37 -1.6 27,186 - EX31_RS16720 0.46 -0.9 27,186 - EX31_RS16720 0.46 -0.9 27,273 - EX31_RS16720 0.57 +1.0 27,433 + EX31_RS16720 0.76 -0.5 27,434 - EX31_RS16720 0.76 +0.4 27,435 + EX31_RS16720 0.76 -1.5 27,435 + EX31_RS16720 0.76 -0.4 27,436 - EX31_RS16720 0.76 +0.4 27,436 - EX31_RS16720 0.76 +0.7 27,436 - EX31_RS16720 0.76 +0.9
Or see this region's nucleotide sequence