Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS13835 and EX31_RS13840 are separated by 136 nucleotides EX31_RS13840 and EX31_RS13845 are separated by 360 nucleotides
EX31_RS13835: EX31_RS13835 - LysR family transcriptional regulator, at 25,884 to 26,789
_RS13835
EX31_RS13840: EX31_RS13840 - Bcr/CflA family multidrug efflux MFS transporter, at 26,926 to 28,137
_RS13840
EX31_RS13845: EX31_RS13845 - cyclopropane fatty acyl phospholipid synthase, at 28,498 to 29,649
_RS13845
Position (kb) 26
27
28
29 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 25.928 kb on + strand at 25.929 kb on - strand at 25.929 kb on - strand at 25.929 kb on - strand at 25.930 kb on + strand at 25.930 kb on + strand at 25.930 kb on + strand at 25.930 kb on + strand at 25.931 kb on - strand at 25.931 kb on - strand at 25.931 kb on - strand at 25.931 kb on - strand at 25.931 kb on - strand at 25.931 kb on - strand at 25.931 kb on - strand at 26.075 kb on + strand, within EX31_RS13835 at 26.075 kb on + strand, within EX31_RS13835 at 26.076 kb on - strand, within EX31_RS13835 at 26.076 kb on - strand, within EX31_RS13835 at 26.076 kb on - strand, within EX31_RS13835 at 26.086 kb on - strand, within EX31_RS13835 at 26.162 kb on + strand, within EX31_RS13835 at 26.163 kb on - strand, within EX31_RS13835 at 26.163 kb on - strand, within EX31_RS13835 at 26.163 kb on - strand, within EX31_RS13835 at 26.294 kb on + strand, within EX31_RS13835 at 26.295 kb on - strand, within EX31_RS13835 at 26.345 kb on + strand, within EX31_RS13835 at 26.508 kb on + strand, within EX31_RS13835 at 26.509 kb on - strand, within EX31_RS13835 at 26.509 kb on - strand, within EX31_RS13835 at 26.509 kb on - strand, within EX31_RS13835 at 26.619 kb on + strand, within EX31_RS13835 at 26.620 kb on - strand, within EX31_RS13835 at 26.685 kb on - strand, within EX31_RS13835 at 26.761 kb on - strand at 26.789 kb on + strand at 26.790 kb on - strand at 26.880 kb on + strand at 26.880 kb on + strand at 26.881 kb on - strand at 26.881 kb on - strand at 26.881 kb on - strand at 26.904 kb on + strand at 26.904 kb on + strand at 26.913 kb on + strand at 26.914 kb on - strand at 26.946 kb on + strand at 26.946 kb on + strand at 26.946 kb on + strand at 26.994 kb on + strand at 26.994 kb on + strand at 26.994 kb on + strand at 26.994 kb on + strand at 26.994 kb on + strand at 26.994 kb on + strand at 26.994 kb on + strand at 26.994 kb on + strand at 26.994 kb on + strand at 26.994 kb on + strand at 26.994 kb on + strand at 26.994 kb on + strand at 26.994 kb on + strand at 26.994 kb on + strand at 26.994 kb on + strand at 26.994 kb on + strand at 26.995 kb on - strand at 26.995 kb on - strand at 26.998 kb on + strand at 26.998 kb on + strand at 26.998 kb on + strand at 26.998 kb on + strand at 26.998 kb on + strand at 26.998 kb on + strand at 26.998 kb on + strand at 26.998 kb on + strand at 26.998 kb on + strand at 26.998 kb on + strand at 26.998 kb on + strand at 26.999 kb on - strand at 26.999 kb on - strand at 26.999 kb on - strand at 26.999 kb on - strand at 26.999 kb on - strand at 26.999 kb on - strand at 26.999 kb on - strand at 26.999 kb on - strand at 26.999 kb on - strand at 26.999 kb on - strand at 27.206 kb on + strand, within EX31_RS13840 at 27.206 kb on + strand, within EX31_RS13840 at 27.330 kb on + strand, within EX31_RS13840 at 27.330 kb on + strand, within EX31_RS13840 at 27.330 kb on + strand, within EX31_RS13840 at 27.368 kb on + strand, within EX31_RS13840 at 27.368 kb on + strand, within EX31_RS13840 at 27.368 kb on + strand, within EX31_RS13840 at 27.368 kb on + strand, within EX31_RS13840 at 27.368 kb on + strand, within EX31_RS13840 at 27.368 kb on + strand, within EX31_RS13840 at 27.368 kb on + strand, within EX31_RS13840 at 27.368 kb on + strand, within EX31_RS13840 at 27.474 kb on + strand, within EX31_RS13840 at 27.474 kb on + strand, within EX31_RS13840 at 27.474 kb on + strand, within EX31_RS13840 at 27.474 kb on + strand, within EX31_RS13840 at 27.655 kb on + strand, within EX31_RS13840 at 27.655 kb on + strand, within EX31_RS13840 at 27.655 kb on + strand, within EX31_RS13840 at 27.655 kb on + strand, within EX31_RS13840 at 27.655 kb on + strand, within EX31_RS13840 at 27.655 kb on + strand, within EX31_RS13840 at 27.655 kb on + strand, within EX31_RS13840 at 27.655 kb on + strand, within EX31_RS13840 at 27.669 kb on + strand, within EX31_RS13840 at 27.669 kb on + strand, within EX31_RS13840 at 27.669 kb on + strand, within EX31_RS13840 at 27.669 kb on + strand, within EX31_RS13840 at 27.669 kb on + strand, within EX31_RS13840 at 27.726 kb on + strand, within EX31_RS13840 at 27.816 kb on + strand, within EX31_RS13840 at 27.865 kb on + strand, within EX31_RS13840 at 27.865 kb on + strand, within EX31_RS13840 at 27.936 kb on + strand, within EX31_RS13840 at 27.936 kb on + strand, within EX31_RS13840 at 27.987 kb on + strand, within EX31_RS13840 at 27.987 kb on + strand, within EX31_RS13840 at 27.987 kb on + strand, within EX31_RS13840 at 28.029 kb on + strand at 28.029 kb on + strand at 28.034 kb on + strand at 28.034 kb on + strand at 28.034 kb on + strand at 28.034 kb on + strand at 28.034 kb on + strand at 28.034 kb on + strand at 28.034 kb on + strand at 28.034 kb on + strand at 28.043 kb on + strand at 28.043 kb on + strand at 28.044 kb on - strand at 28.224 kb on - strand at 28.225 kb on + strand at 28.247 kb on + strand at 28.274 kb on + strand at 28.274 kb on + strand at 28.278 kb on + strand at 28.278 kb on + strand at 28.278 kb on + strand at 28.279 kb on - strand at 28.279 kb on - strand at 28.279 kb on - strand at 28.318 kb on - strand at 28.425 kb on + strand at 28.468 kb on + strand at 28.468 kb on + strand at 28.468 kb on + strand at 28.468 kb on + strand at 28.497 kb on + strand at 28.497 kb on + strand at 28.497 kb on + strand at 28.497 kb on + strand at 28.497 kb on + strand at 28.498 kb on - strand at 28.512 kb on + strand at 28.513 kb on - strand at 28.514 kb on + strand at 28.514 kb on + strand at 28.514 kb on + strand at 28.514 kb on + strand at 28.582 kb on - strand at 28.582 kb on - strand at 28.582 kb on - strand at 28.614 kb on + strand, within EX31_RS13845 at 28.649 kb on + strand, within EX31_RS13845 at 28.681 kb on + strand, within EX31_RS13845 at 28.681 kb on + strand, within EX31_RS13845 at 28.682 kb on - strand, within EX31_RS13845 at 28.682 kb on - strand, within EX31_RS13845 at 28.682 kb on - strand, within EX31_RS13845 at 28.683 kb on + strand, within EX31_RS13845 at 28.716 kb on + strand, within EX31_RS13845 at 28.755 kb on + strand, within EX31_RS13845 at 28.755 kb on + strand, within EX31_RS13845 at 28.755 kb on + strand, within EX31_RS13845 at 28.779 kb on + strand, within EX31_RS13845 at 28.780 kb on - strand, within EX31_RS13845 at 28.780 kb on - strand, within EX31_RS13845 at 28.784 kb on + strand, within EX31_RS13845 at 28.784 kb on + strand, within EX31_RS13845 at 28.784 kb on + strand, within EX31_RS13845 at 28.784 kb on + strand, within EX31_RS13845 at 28.855 kb on + strand, within EX31_RS13845 at 28.856 kb on - strand, within EX31_RS13845 at 28.875 kb on - strand, within EX31_RS13845 at 28.898 kb on - strand, within EX31_RS13845 at 28.906 kb on + strand, within EX31_RS13845 at 28.907 kb on - strand, within EX31_RS13845
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 25,928 + -0.5 25,929 - -0.6 25,929 - +0.1 25,929 - -0.5 25,930 + +0.2 25,930 + +0.2 25,930 + -1.1 25,930 + -0.6 25,931 - -3.3 25,931 - +0.4 25,931 - -0.2 25,931 - +0.7 25,931 - -0.6 25,931 - -0.1 25,931 - -0.5 26,075 + EX31_RS13835 0.21 -1.1 26,075 + EX31_RS13835 0.21 -0.5 26,076 - EX31_RS13835 0.21 +0.3 26,076 - EX31_RS13835 0.21 +0.6 26,076 - EX31_RS13835 0.21 -0.1 26,086 - EX31_RS13835 0.22 -1.1 26,162 + EX31_RS13835 0.31 -0.3 26,163 - EX31_RS13835 0.31 -0.5 26,163 - EX31_RS13835 0.31 -1.7 26,163 - EX31_RS13835 0.31 +1.0 26,294 + EX31_RS13835 0.45 +0.0 26,295 - EX31_RS13835 0.45 +0.4 26,345 + EX31_RS13835 0.51 +0.2 26,508 + EX31_RS13835 0.69 +0.2 26,509 - EX31_RS13835 0.69 +1.4 26,509 - EX31_RS13835 0.69 -0.2 26,509 - EX31_RS13835 0.69 -0.8 26,619 + EX31_RS13835 0.81 +0.8 26,620 - EX31_RS13835 0.81 -0.9 26,685 - EX31_RS13835 0.88 -0.5 26,761 - +0.7 26,789 + -1.8 26,790 - -0.7 26,880 + +0.6 26,880 + +0.5 26,881 - -0.8 26,881 - +0.2 26,881 - +1.5 26,904 + +0.8 26,904 + +0.6 26,913 + -0.4 26,914 - -0.1 26,946 + +0.8 26,946 + -0.3 26,946 + +0.7 26,994 + -0.8 26,994 + -0.2 26,994 + -2.4 26,994 + -0.3 26,994 + +0.1 26,994 + -0.4 26,994 + -0.3 26,994 + -0.1 26,994 + +0.3 26,994 + -0.7 26,994 + -0.1 26,994 + +0.8 26,994 + +0.4 26,994 + +0.3 26,994 + +0.3 26,994 + -0.2 26,995 - +1.0 26,995 - +0.8 26,998 + -0.0 26,998 + -1.2 26,998 + -0.3 26,998 + +0.1 26,998 + -0.3 26,998 + +0.4 26,998 + -0.8 26,998 + +0.4 26,998 + +0.2 26,998 + +0.1 26,998 + -0.4 26,999 - -1.7 26,999 - +0.3 26,999 - +0.3 26,999 - +0.6 26,999 - -2.0 26,999 - +0.4 26,999 - -0.2 26,999 - -3.2 26,999 - -0.4 26,999 - +0.7 27,206 + EX31_RS13840 0.23 -0.3 27,206 + EX31_RS13840 0.23 +0.3 27,330 + EX31_RS13840 0.33 +0.1 27,330 + EX31_RS13840 0.33 -0.8 27,330 + EX31_RS13840 0.33 +0.2 27,368 + EX31_RS13840 0.36 -0.7 27,368 + EX31_RS13840 0.36 +0.1 27,368 + EX31_RS13840 0.36 -0.4 27,368 + EX31_RS13840 0.36 +0.2 27,368 + EX31_RS13840 0.36 -0.2 27,368 + EX31_RS13840 0.36 +0.3 27,368 + EX31_RS13840 0.36 -1.9 27,368 + EX31_RS13840 0.36 -1.0 27,474 + EX31_RS13840 0.45 +0.5 27,474 + EX31_RS13840 0.45 +0.7 27,474 + EX31_RS13840 0.45 -1.2 27,474 + EX31_RS13840 0.45 -0.4 27,655 + EX31_RS13840 0.60 +0.1 27,655 + EX31_RS13840 0.60 +0.4 27,655 + EX31_RS13840 0.60 -0.2 27,655 + EX31_RS13840 0.60 -0.0 27,655 + EX31_RS13840 0.60 -1.1 27,655 + EX31_RS13840 0.60 +0.2 27,655 + EX31_RS13840 0.60 +0.8 27,655 + EX31_RS13840 0.60 +1.0 27,669 + EX31_RS13840 0.61 +0.5 27,669 + EX31_RS13840 0.61 -0.9 27,669 + EX31_RS13840 0.61 +0.1 27,669 + EX31_RS13840 0.61 -0.5 27,669 + EX31_RS13840 0.61 -1.3 27,726 + EX31_RS13840 0.66 -1.3 27,816 + EX31_RS13840 0.73 -0.9 27,865 + EX31_RS13840 0.77 -0.2 27,865 + EX31_RS13840 0.77 -1.4 27,936 + EX31_RS13840 0.83 -0.3 27,936 + EX31_RS13840 0.83 -1.0 27,987 + EX31_RS13840 0.88 -0.2 27,987 + EX31_RS13840 0.88 +0.1 27,987 + EX31_RS13840 0.88 +0.4 28,029 + +0.9 28,029 + -0.3 28,034 + -0.4 28,034 + -0.5 28,034 + +0.3 28,034 + -0.2 28,034 + +0.1 28,034 + -0.1 28,034 + +1.0 28,034 + +0.6 28,043 + +0.0 28,043 + -0.2 28,044 - -0.2 28,224 - -0.0 28,225 + +0.8 28,247 + -0.5 28,274 + +0.0 28,274 + -0.1 28,278 + -1.7 28,278 + +0.4 28,278 + -0.7 28,279 - -0.4 28,279 - -0.7 28,279 - +1.2 28,318 - +0.3 28,425 + +0.1 28,468 + +0.0 28,468 + +1.0 28,468 + +0.2 28,468 + -1.5 28,497 + -0.4 28,497 + +0.7 28,497 + -0.1 28,497 + +0.9 28,497 + -0.9 28,498 - -0.5 28,512 + +0.3 28,513 - +0.5 28,514 + -0.1 28,514 + +1.2 28,514 + -0.1 28,514 + -0.4 28,582 - +0.1 28,582 - -0.2 28,582 - +0.6 28,614 + EX31_RS13845 0.10 -0.2 28,649 + EX31_RS13845 0.13 +0.2 28,681 + EX31_RS13845 0.16 +0.3 28,681 + EX31_RS13845 0.16 +0.9 28,682 - EX31_RS13845 0.16 +0.2 28,682 - EX31_RS13845 0.16 -0.9 28,682 - EX31_RS13845 0.16 -0.1 28,683 + EX31_RS13845 0.16 +1.3 28,716 + EX31_RS13845 0.19 +0.3 28,755 + EX31_RS13845 0.22 +1.0 28,755 + EX31_RS13845 0.22 +0.2 28,755 + EX31_RS13845 0.22 -1.1 28,779 + EX31_RS13845 0.24 -0.0 28,780 - EX31_RS13845 0.24 -0.8 28,780 - EX31_RS13845 0.24 -0.4 28,784 + EX31_RS13845 0.25 +0.1 28,784 + EX31_RS13845 0.25 -2.2 28,784 + EX31_RS13845 0.25 -0.3 28,784 + EX31_RS13845 0.25 +0.1 28,855 + EX31_RS13845 0.31 +0.7 28,856 - EX31_RS13845 0.31 -0.3 28,875 - EX31_RS13845 0.33 -0.9 28,898 - EX31_RS13845 0.35 +0.6 28,906 + EX31_RS13845 0.35 +0.2 28,907 - EX31_RS13845 0.36 -1.0
Or see this region's nucleotide sequence