Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS11565 and EX31_RS11570 are separated by 25 nucleotides EX31_RS11570 and EX31_RS11575 are separated by 119 nucleotides EX31_RS11575 and EX31_RS11580 are separated by 219 nucleotides
EX31_RS11565: EX31_RS11565 - PLP-dependent aminotransferase family protein, at 252,400 to 253,818
_RS11565
EX31_RS11570: EX31_RS11570 - LysR family transcriptional regulator, at 253,844 to 254,734
_RS11570
EX31_RS11575: EX31_RS11575 - hypothetical protein, at 254,854 to 255,135
_RS11575
EX31_RS11580: EX31_RS11580 - ABC transporter substrate-binding protein, at 255,355 to 256,938
_RS11580
Position (kb) 253
254
255 Strain fitness (log2 ratio) -2
-1
0
1
2 at 252.851 kb on + strand, within EX31_RS11565 at 252.894 kb on + strand, within EX31_RS11565 at 252.895 kb on - strand, within EX31_RS11565 at 253.131 kb on - strand, within EX31_RS11565 at 253.166 kb on - strand, within EX31_RS11565 at 253.166 kb on - strand, within EX31_RS11565 at 253.186 kb on - strand, within EX31_RS11565 at 253.246 kb on + strand, within EX31_RS11565 at 253.262 kb on - strand, within EX31_RS11565 at 253.287 kb on + strand, within EX31_RS11565 at 253.287 kb on + strand, within EX31_RS11565 at 253.287 kb on + strand, within EX31_RS11565 at 253.287 kb on + strand, within EX31_RS11565 at 253.288 kb on - strand, within EX31_RS11565 at 253.288 kb on - strand, within EX31_RS11565 at 253.288 kb on - strand, within EX31_RS11565 at 253.313 kb on + strand, within EX31_RS11565 at 253.411 kb on + strand, within EX31_RS11565 at 253.411 kb on + strand, within EX31_RS11565 at 253.411 kb on + strand, within EX31_RS11565 at 253.411 kb on + strand, within EX31_RS11565 at 253.412 kb on - strand, within EX31_RS11565 at 253.412 kb on - strand, within EX31_RS11565 at 253.412 kb on - strand, within EX31_RS11565 at 253.412 kb on - strand, within EX31_RS11565 at 253.480 kb on + strand, within EX31_RS11565 at 253.480 kb on + strand, within EX31_RS11565 at 253.480 kb on + strand, within EX31_RS11565 at 253.502 kb on + strand, within EX31_RS11565 at 253.513 kb on + strand, within EX31_RS11565 at 253.555 kb on + strand, within EX31_RS11565 at 253.667 kb on + strand, within EX31_RS11565 at 253.667 kb on + strand, within EX31_RS11565 at 253.667 kb on + strand, within EX31_RS11565 at 253.735 kb on + strand at 253.735 kb on + strand at 253.735 kb on + strand at 253.735 kb on + strand at 253.735 kb on + strand at 253.735 kb on + strand at 253.736 kb on - strand at 253.736 kb on - strand at 253.841 kb on - strand at 253.852 kb on - strand at 253.852 kb on - strand at 253.852 kb on - strand at 253.997 kb on - strand, within EX31_RS11570 at 254.021 kb on - strand, within EX31_RS11570 at 254.052 kb on - strand, within EX31_RS11570 at 254.068 kb on + strand, within EX31_RS11570 at 254.069 kb on - strand, within EX31_RS11570 at 254.084 kb on - strand, within EX31_RS11570 at 254.286 kb on - strand, within EX31_RS11570 at 254.317 kb on - strand, within EX31_RS11570 at 254.526 kb on - strand, within EX31_RS11570 at 254.526 kb on - strand, within EX31_RS11570 at 254.597 kb on + strand, within EX31_RS11570 at 254.597 kb on + strand, within EX31_RS11570 at 254.597 kb on + strand, within EX31_RS11570 at 254.597 kb on + strand, within EX31_RS11570 at 254.597 kb on + strand, within EX31_RS11570 at 254.660 kb on + strand at 254.661 kb on - strand at 254.661 kb on - strand at 254.661 kb on - strand at 254.704 kb on + strand at 254.848 kb on - strand at 255.024 kb on + strand, within EX31_RS11575 at 255.162 kb on + strand at 255.163 kb on - strand at 255.163 kb on - strand at 255.338 kb on + strand at 255.341 kb on + strand at 255.366 kb on + strand at 255.367 kb on - strand at 255.421 kb on - strand at 255.457 kb on - strand at 255.547 kb on - strand, within EX31_RS11580 at 255.595 kb on + strand, within EX31_RS11580 at 255.595 kb on + strand, within EX31_RS11580 at 255.597 kb on + strand, within EX31_RS11580 at 255.597 kb on + strand, within EX31_RS11580 at 255.597 kb on + strand, within EX31_RS11580 at 255.597 kb on + strand, within EX31_RS11580 at 255.598 kb on - strand, within EX31_RS11580 at 255.598 kb on - strand, within EX31_RS11580 at 255.598 kb on - strand, within EX31_RS11580 at 255.598 kb on - strand, within EX31_RS11580
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 252,851 + EX31_RS11565 0.32 +0.4 252,894 + EX31_RS11565 0.35 -0.0 252,895 - EX31_RS11565 0.35 +0.6 253,131 - EX31_RS11565 0.52 +0.2 253,166 - EX31_RS11565 0.54 -1.4 253,166 - EX31_RS11565 0.54 +0.5 253,186 - EX31_RS11565 0.55 -2.2 253,246 + EX31_RS11565 0.60 +0.3 253,262 - EX31_RS11565 0.61 -0.8 253,287 + EX31_RS11565 0.63 -0.4 253,287 + EX31_RS11565 0.63 +0.3 253,287 + EX31_RS11565 0.63 -0.5 253,287 + EX31_RS11565 0.63 +0.1 253,288 - EX31_RS11565 0.63 -0.8 253,288 - EX31_RS11565 0.63 +0.2 253,288 - EX31_RS11565 0.63 +0.4 253,313 + EX31_RS11565 0.64 +0.0 253,411 + EX31_RS11565 0.71 -0.6 253,411 + EX31_RS11565 0.71 -0.6 253,411 + EX31_RS11565 0.71 -1.0 253,411 + EX31_RS11565 0.71 -0.9 253,412 - EX31_RS11565 0.71 -1.9 253,412 - EX31_RS11565 0.71 +0.6 253,412 - EX31_RS11565 0.71 +0.7 253,412 - EX31_RS11565 0.71 -1.0 253,480 + EX31_RS11565 0.76 +0.6 253,480 + EX31_RS11565 0.76 -0.0 253,480 + EX31_RS11565 0.76 +0.0 253,502 + EX31_RS11565 0.78 +0.7 253,513 + EX31_RS11565 0.78 +0.9 253,555 + EX31_RS11565 0.81 -1.7 253,667 + EX31_RS11565 0.89 -1.8 253,667 + EX31_RS11565 0.89 +0.7 253,667 + EX31_RS11565 0.89 +1.0 253,735 + +0.6 253,735 + -0.6 253,735 + -0.4 253,735 + -0.1 253,735 + -0.5 253,735 + -0.6 253,736 - +0.4 253,736 - +0.0 253,841 - -1.4 253,852 - -0.2 253,852 - -0.6 253,852 - -1.4 253,997 - EX31_RS11570 0.17 +0.4 254,021 - EX31_RS11570 0.20 -1.4 254,052 - EX31_RS11570 0.23 -2.0 254,068 + EX31_RS11570 0.25 -1.6 254,069 - EX31_RS11570 0.25 -0.5 254,084 - EX31_RS11570 0.27 -0.3 254,286 - EX31_RS11570 0.50 -1.8 254,317 - EX31_RS11570 0.53 -0.6 254,526 - EX31_RS11570 0.77 +0.9 254,526 - EX31_RS11570 0.77 -0.2 254,597 + EX31_RS11570 0.85 +0.5 254,597 + EX31_RS11570 0.85 +0.1 254,597 + EX31_RS11570 0.85 -1.1 254,597 + EX31_RS11570 0.85 -0.5 254,597 + EX31_RS11570 0.85 -1.3 254,660 + -0.7 254,661 - +0.9 254,661 - +0.5 254,661 - -0.1 254,704 + -1.0 254,848 - -1.4 255,024 + EX31_RS11575 0.60 +0.9 255,162 + -0.4 255,163 - -0.3 255,163 - +0.1 255,338 + -1.6 255,341 + +2.0 255,366 + -1.8 255,367 - -0.2 255,421 - -0.7 255,457 - +0.0 255,547 - EX31_RS11580 0.12 -0.9 255,595 + EX31_RS11580 0.15 -0.2 255,595 + EX31_RS11580 0.15 -1.3 255,597 + EX31_RS11580 0.15 -0.4 255,597 + EX31_RS11580 0.15 -0.1 255,597 + EX31_RS11580 0.15 -0.9 255,597 + EX31_RS11580 0.15 -0.0 255,598 - EX31_RS11580 0.15 -2.2 255,598 - EX31_RS11580 0.15 -0.6 255,598 - EX31_RS11580 0.15 -0.6 255,598 - EX31_RS11580 0.15 -0.2
Or see this region's nucleotide sequence