Strain Fitness in Rahnella sp. WP5 around EX31_RS11380

Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS11375 and EX31_RS11380 are separated by 96 nucleotidesEX31_RS11380 and EX31_RS11385 are separated by 8 nucleotidesEX31_RS11385 and EX31_RS11390 are separated by 198 nucleotides EX31_RS11375: EX31_RS11375 - HAMP domain-containing protein, at 206,678 to 208,372 _RS11375 EX31_RS11380: EX31_RS11380 - hypothetical protein, at 208,469 to 209,062 _RS11380 EX31_RS11385: EX31_RS11385 - hypothetical protein, at 209,071 to 209,367 _RS11385 EX31_RS11390: EX31_RS11390 - MFS transporter, at 209,566 to 211,041 _RS11390 Position (kb) 208 209 210Strain fitness (log2 ratio) -2 -1 0 1 2at 207.490 kb on + strand, within EX31_RS11375at 207.540 kb on + strand, within EX31_RS11375at 207.541 kb on - strand, within EX31_RS11375at 207.563 kb on + strand, within EX31_RS11375at 207.563 kb on + strand, within EX31_RS11375at 207.563 kb on + strand, within EX31_RS11375at 207.563 kb on + strand, within EX31_RS11375at 207.564 kb on - strand, within EX31_RS11375at 207.564 kb on - strand, within EX31_RS11375at 207.564 kb on - strand, within EX31_RS11375at 207.600 kb on + strand, within EX31_RS11375at 207.601 kb on - strand, within EX31_RS11375at 207.601 kb on - strand, within EX31_RS11375at 207.601 kb on - strand, within EX31_RS11375at 207.601 kb on - strand, within EX31_RS11375at 207.601 kb on - strand, within EX31_RS11375at 207.610 kb on + strand, within EX31_RS11375at 207.805 kb on + strand, within EX31_RS11375at 207.841 kb on - strand, within EX31_RS11375at 207.864 kb on + strand, within EX31_RS11375at 207.864 kb on + strand, within EX31_RS11375at 207.865 kb on - strand, within EX31_RS11375at 208.258 kb on + strandat 208.282 kb on + strandat 208.283 kb on - strandat 208.311 kb on - strandat 208.311 kb on - strandat 208.311 kb on - strandat 208.331 kb on + strandat 208.366 kb on + strandat 208.396 kb on + strandat 208.396 kb on + strandat 208.434 kb on - strandat 208.564 kb on + strand, within EX31_RS11380at 208.564 kb on + strand, within EX31_RS11380at 208.565 kb on - strand, within EX31_RS11380at 208.565 kb on - strand, within EX31_RS11380at 208.569 kb on - strand, within EX31_RS11380at 208.739 kb on - strand, within EX31_RS11380at 208.739 kb on - strand, within EX31_RS11380at 208.740 kb on + strand, within EX31_RS11380at 208.740 kb on + strand, within EX31_RS11380at 208.744 kb on - strand, within EX31_RS11380at 208.744 kb on - strand, within EX31_RS11380at 208.744 kb on - strand, within EX31_RS11380at 208.744 kb on - strand, within EX31_RS11380at 208.744 kb on - strand, within EX31_RS11380at 208.744 kb on - strand, within EX31_RS11380at 208.853 kb on + strand, within EX31_RS11380at 208.854 kb on - strand, within EX31_RS11380at 208.854 kb on - strand, within EX31_RS11380at 208.922 kb on - strand, within EX31_RS11380at 208.926 kb on - strand, within EX31_RS11380at 208.926 kb on - strand, within EX31_RS11380at 208.926 kb on - strand, within EX31_RS11380at 208.940 kb on - strand, within EX31_RS11380at 208.951 kb on + strand, within EX31_RS11380at 208.952 kb on - strand, within EX31_RS11380at 208.990 kb on - strand, within EX31_RS11380at 208.990 kb on - strand, within EX31_RS11380at 209.052 kb on + strandat 209.053 kb on - strandat 209.053 kb on - strandat 209.053 kb on - strandat 209.053 kb on - strandat 209.056 kb on + strandat 209.057 kb on - strandat 209.057 kb on - strandat 209.057 kb on - strandat 209.057 kb on - strandat 209.127 kb on - strand, within EX31_RS11385at 209.173 kb on - strand, within EX31_RS11385at 209.173 kb on - strand, within EX31_RS11385at 209.173 kb on - strand, within EX31_RS11385at 209.190 kb on - strand, within EX31_RS11385at 209.204 kb on + strand, within EX31_RS11385at 209.208 kb on + strand, within EX31_RS11385at 209.265 kb on + strand, within EX31_RS11385at 209.269 kb on + strand, within EX31_RS11385at 209.270 kb on - strand, within EX31_RS11385at 209.314 kb on - strand, within EX31_RS11385at 209.407 kb on + strandat 209.764 kb on + strand, within EX31_RS11390at 209.765 kb on - strand, within EX31_RS11390at 209.875 kb on - strand, within EX31_RS11390at 209.929 kb on - strand, within EX31_RS11390at 209.943 kb on + strand, within EX31_RS11390at 209.944 kb on - strand, within EX31_RS11390at 209.989 kb on + strand, within EX31_RS11390at 209.990 kb on - strand, within EX31_RS11390at 210.027 kb on + strand, within EX31_RS11390at 210.027 kb on + strand, within EX31_RS11390at 210.040 kb on + strand, within EX31_RS11390

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
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207,490 + EX31_RS11375 0.48 +0.1
207,540 + EX31_RS11375 0.51 -0.3
207,541 - EX31_RS11375 0.51 +0.5
207,563 + EX31_RS11375 0.52 +0.8
207,563 + EX31_RS11375 0.52 -0.6
207,563 + EX31_RS11375 0.52 +2.2
207,563 + EX31_RS11375 0.52 -1.2
207,564 - EX31_RS11375 0.52 +0.3
207,564 - EX31_RS11375 0.52 -0.3
207,564 - EX31_RS11375 0.52 -0.5
207,600 + EX31_RS11375 0.54 -0.3
207,601 - EX31_RS11375 0.54 -0.9
207,601 - EX31_RS11375 0.54 -0.5
207,601 - EX31_RS11375 0.54 +0.4
207,601 - EX31_RS11375 0.54 -1.5
207,601 - EX31_RS11375 0.54 +0.6
207,610 + EX31_RS11375 0.55 -0.4
207,805 + EX31_RS11375 0.66 +0.1
207,841 - EX31_RS11375 0.69 -0.5
207,864 + EX31_RS11375 0.70 +0.2
207,864 + EX31_RS11375 0.70 +1.6
207,865 - EX31_RS11375 0.70 -0.5
208,258 + -0.7
208,282 + -0.9
208,283 - -2.0
208,311 - -1.0
208,311 - -0.1
208,311 - +1.3
208,331 + -0.2
208,366 + +0.9
208,396 + -0.6
208,396 + +0.0
208,434 - +0.4
208,564 + EX31_RS11380 0.16 -0.8
208,564 + EX31_RS11380 0.16 -0.5
208,565 - EX31_RS11380 0.16 -0.6
208,565 - EX31_RS11380 0.16 -0.6
208,569 - EX31_RS11380 0.17 -0.4
208,739 - EX31_RS11380 0.45 -2.4
208,739 - EX31_RS11380 0.45 -1.9
208,740 + EX31_RS11380 0.46 -0.7
208,740 + EX31_RS11380 0.46 +0.7
208,744 - EX31_RS11380 0.46 +0.1
208,744 - EX31_RS11380 0.46 -1.9
208,744 - EX31_RS11380 0.46 +1.2
208,744 - EX31_RS11380 0.46 +0.3
208,744 - EX31_RS11380 0.46 -0.6
208,744 - EX31_RS11380 0.46 +0.0
208,853 + EX31_RS11380 0.65 -1.7
208,854 - EX31_RS11380 0.65 -0.5
208,854 - EX31_RS11380 0.65 +0.2
208,922 - EX31_RS11380 0.76 -0.6
208,926 - EX31_RS11380 0.77 -1.8
208,926 - EX31_RS11380 0.77 -0.8
208,926 - EX31_RS11380 0.77 -0.0
208,940 - EX31_RS11380 0.79 +0.1
208,951 + EX31_RS11380 0.81 -0.8
208,952 - EX31_RS11380 0.81 -1.4
208,990 - EX31_RS11380 0.88 -0.7
208,990 - EX31_RS11380 0.88 +0.4
209,052 + -1.5
209,053 - +0.3
209,053 - -0.8
209,053 - +0.3
209,053 - +0.5
209,056 + -0.9
209,057 - -0.9
209,057 - -0.3
209,057 - +0.4
209,057 - -2.0
209,127 - EX31_RS11385 0.19 -0.3
209,173 - EX31_RS11385 0.34 +0.1
209,173 - EX31_RS11385 0.34 +0.5
209,173 - EX31_RS11385 0.34 +0.2
209,190 - EX31_RS11385 0.40 +1.5
209,204 + EX31_RS11385 0.45 +1.3
209,208 + EX31_RS11385 0.46 +0.7
209,265 + EX31_RS11385 0.65 -1.7
209,269 + EX31_RS11385 0.67 -0.3
209,270 - EX31_RS11385 0.67 -1.1
209,314 - EX31_RS11385 0.82 +0.5
209,407 + -1.7
209,764 + EX31_RS11390 0.13 -0.3
209,765 - EX31_RS11390 0.13 -1.4
209,875 - EX31_RS11390 0.21 -0.8
209,929 - EX31_RS11390 0.25 +1.0
209,943 + EX31_RS11390 0.26 -0.6
209,944 - EX31_RS11390 0.26 +2.0
209,989 + EX31_RS11390 0.29 -1.4
209,990 - EX31_RS11390 0.29 -1.0
210,027 + EX31_RS11390 0.31 +0.5
210,027 + EX31_RS11390 0.31 -2.1
210,040 + EX31_RS11390 0.32 -1.3

Or see this region's nucleotide sequence