Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS11100 and EX31_RS11105 are separated by 20 nucleotides EX31_RS11105 and EX31_RS11110 overlap by 11 nucleotides EX31_RS11110 and EX31_RS11115 are separated by 29 nucleotides
EX31_RS11100: EX31_RS11100 - oxidoreductase, at 150,551 to 151,525
_RS11100
EX31_RS11105: EX31_RS11105 - cytosine deaminase, at 151,546 to 152,826
_RS11105
EX31_RS11110: EX31_RS11110 - RidA family protein, at 152,816 to 153,277
_RS11110
EX31_RS11115: EX31_RS11115 - creatininase family protein, at 153,307 to 154,188
_RS11115
Position (kb) 151
152
153 Strain fitness (log2 ratio) -2
-1
0
1
2 at 150.602 kb on - strand at 150.602 kb on - strand at 150.620 kb on - strand at 150.620 kb on - strand at 150.752 kb on + strand, within EX31_RS11100 at 150.753 kb on - strand, within EX31_RS11100 at 150.888 kb on - strand, within EX31_RS11100 at 150.888 kb on - strand, within EX31_RS11100 at 151.087 kb on + strand, within EX31_RS11100 at 151.156 kb on + strand, within EX31_RS11100 at 151.156 kb on + strand, within EX31_RS11100 at 151.210 kb on - strand, within EX31_RS11100 at 151.280 kb on - strand, within EX31_RS11100 at 151.298 kb on + strand, within EX31_RS11100 at 151.335 kb on + strand, within EX31_RS11100 at 151.335 kb on + strand, within EX31_RS11100 at 151.336 kb on - strand, within EX31_RS11100 at 151.338 kb on + strand, within EX31_RS11100 at 151.338 kb on + strand, within EX31_RS11100 at 151.357 kb on + strand, within EX31_RS11100 at 151.357 kb on + strand, within EX31_RS11100 at 151.357 kb on + strand, within EX31_RS11100 at 151.357 kb on + strand, within EX31_RS11100 at 151.358 kb on - strand, within EX31_RS11100 at 151.397 kb on - strand, within EX31_RS11100 at 151.523 kb on + strand at 151.524 kb on - strand at 151.575 kb on + strand at 151.576 kb on - strand at 151.899 kb on + strand, within EX31_RS11105 at 152.133 kb on + strand, within EX31_RS11105 at 152.298 kb on + strand, within EX31_RS11105 at 152.299 kb on - strand, within EX31_RS11105 at 152.299 kb on - strand, within EX31_RS11105 at 152.522 kb on + strand, within EX31_RS11105 at 152.522 kb on + strand, within EX31_RS11105 at 152.551 kb on + strand, within EX31_RS11105 at 152.551 kb on + strand, within EX31_RS11105 at 152.565 kb on + strand, within EX31_RS11105 at 152.565 kb on + strand, within EX31_RS11105 at 152.793 kb on + strand at 152.793 kb on + strand at 152.793 kb on + strand at 152.855 kb on + strand at 152.856 kb on - strand at 153.039 kb on - strand, within EX31_RS11110 at 153.039 kb on - strand, within EX31_RS11110 at 153.143 kb on + strand, within EX31_RS11110 at 153.320 kb on - strand at 153.520 kb on + strand, within EX31_RS11115 at 153.520 kb on + strand, within EX31_RS11115 at 153.521 kb on - strand, within EX31_RS11115 at 153.541 kb on + strand, within EX31_RS11115 at 153.564 kb on - strand, within EX31_RS11115
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 150,602 - -2.5 150,602 - -1.7 150,620 - +0.0 150,620 - +1.2 150,752 + EX31_RS11100 0.21 +0.2 150,753 - EX31_RS11100 0.21 -0.5 150,888 - EX31_RS11100 0.35 +0.9 150,888 - EX31_RS11100 0.35 -0.1 151,087 + EX31_RS11100 0.55 -1.7 151,156 + EX31_RS11100 0.62 +1.4 151,156 + EX31_RS11100 0.62 +0.3 151,210 - EX31_RS11100 0.68 -0.9 151,280 - EX31_RS11100 0.75 +0.4 151,298 + EX31_RS11100 0.77 -0.2 151,335 + EX31_RS11100 0.80 -1.4 151,335 + EX31_RS11100 0.80 +0.4 151,336 - EX31_RS11100 0.81 +0.4 151,338 + EX31_RS11100 0.81 +0.9 151,338 + EX31_RS11100 0.81 -0.9 151,357 + EX31_RS11100 0.83 -1.1 151,357 + EX31_RS11100 0.83 +1.1 151,357 + EX31_RS11100 0.83 -0.7 151,357 + EX31_RS11100 0.83 -0.0 151,358 - EX31_RS11100 0.83 -0.3 151,397 - EX31_RS11100 0.87 +0.1 151,523 + +0.9 151,524 - +0.7 151,575 + -2.7 151,576 - -0.8 151,899 + EX31_RS11105 0.28 -0.5 152,133 + EX31_RS11105 0.46 -1.1 152,298 + EX31_RS11105 0.59 -0.6 152,299 - EX31_RS11105 0.59 -0.9 152,299 - EX31_RS11105 0.59 -1.0 152,522 + EX31_RS11105 0.76 +0.6 152,522 + EX31_RS11105 0.76 +1.1 152,551 + EX31_RS11105 0.78 -0.7 152,551 + EX31_RS11105 0.78 -0.7 152,565 + EX31_RS11105 0.80 -0.8 152,565 + EX31_RS11105 0.80 -2.2 152,793 + +0.8 152,793 + +0.5 152,793 + -0.4 152,855 + +0.6 152,856 - +0.4 153,039 - EX31_RS11110 0.48 +0.4 153,039 - EX31_RS11110 0.48 -1.1 153,143 + EX31_RS11110 0.71 +0.6 153,320 - +2.5 153,520 + EX31_RS11115 0.24 -1.4 153,520 + EX31_RS11115 0.24 +0.2 153,521 - EX31_RS11115 0.24 -0.0 153,541 + EX31_RS11115 0.27 -1.0 153,564 - EX31_RS11115 0.29 +0.1
Or see this region's nucleotide sequence