Strain Fitness in Rahnella sp. WP5 around EX31_RS10410

Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS10405 and EX31_RS10410 are separated by 106 nucleotidesEX31_RS10410 and EX31_RS10415 overlap by 53 nucleotides EX31_RS10405: EX31_RS10405 - LysR family transcriptional regulator, at 291,930 to 292,847 _RS10405 EX31_RS10410: EX31_RS10410 - SDR family NAD(P)-dependent oxidoreductase, at 292,954 to 293,610 _RS10410 EX31_RS10415: EX31_RS10415 - MFS transporter, at 293,558 to 294,868 _RS10415 Position (kb) 292 293 294Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 291.989 kb on + strandat 292.014 kb on + strandat 292.014 kb on + strandat 292.015 kb on - strandat 292.035 kb on + strand, within EX31_RS10405at 292.035 kb on + strand, within EX31_RS10405at 292.036 kb on - strand, within EX31_RS10405at 292.039 kb on + strand, within EX31_RS10405at 292.039 kb on + strand, within EX31_RS10405at 292.040 kb on - strand, within EX31_RS10405at 292.040 kb on - strand, within EX31_RS10405at 292.101 kb on - strand, within EX31_RS10405at 292.101 kb on - strand, within EX31_RS10405at 292.128 kb on + strand, within EX31_RS10405at 292.129 kb on - strand, within EX31_RS10405at 292.269 kb on - strand, within EX31_RS10405at 292.317 kb on - strand, within EX31_RS10405at 292.327 kb on - strand, within EX31_RS10405at 292.327 kb on - strand, within EX31_RS10405at 292.333 kb on + strand, within EX31_RS10405at 292.333 kb on + strand, within EX31_RS10405at 292.334 kb on - strand, within EX31_RS10405at 292.446 kb on - strand, within EX31_RS10405at 292.446 kb on - strand, within EX31_RS10405at 292.482 kb on + strand, within EX31_RS10405at 292.482 kb on + strand, within EX31_RS10405at 292.483 kb on - strand, within EX31_RS10405at 292.483 kb on - strand, within EX31_RS10405at 292.483 kb on - strand, within EX31_RS10405at 292.483 kb on - strand, within EX31_RS10405at 292.483 kb on - strand, within EX31_RS10405at 292.483 kb on - strand, within EX31_RS10405at 292.483 kb on - strand, within EX31_RS10405at 292.483 kb on - strand, within EX31_RS10405at 292.483 kb on - strand, within EX31_RS10405at 292.483 kb on - strand, within EX31_RS10405at 292.483 kb on - strand, within EX31_RS10405at 292.654 kb on + strand, within EX31_RS10405at 292.654 kb on + strand, within EX31_RS10405at 292.655 kb on - strand, within EX31_RS10405at 292.655 kb on - strand, within EX31_RS10405at 292.692 kb on - strand, within EX31_RS10405at 292.747 kb on - strand, within EX31_RS10405at 292.767 kb on + strandat 292.788 kb on - strandat 292.788 kb on - strandat 292.912 kb on - strandat 292.915 kb on - strandat 292.919 kb on + strandat 292.919 kb on + strandat 292.935 kb on + strandat 292.935 kb on + strandat 292.936 kb on - strandat 292.936 kb on - strandat 292.936 kb on - strandat 292.936 kb on - strandat 292.936 kb on - strandat 293.001 kb on + strandat 293.002 kb on - strandat 293.079 kb on + strand, within EX31_RS10410at 293.084 kb on + strand, within EX31_RS10410at 293.260 kb on - strand, within EX31_RS10410at 293.304 kb on - strand, within EX31_RS10410at 293.392 kb on + strand, within EX31_RS10410at 293.392 kb on + strand, within EX31_RS10410at 293.392 kb on + strand, within EX31_RS10410at 293.393 kb on - strand, within EX31_RS10410at 293.436 kb on - strand, within EX31_RS10410at 293.437 kb on + strand, within EX31_RS10410at 293.533 kb on - strand, within EX31_RS10410at 293.533 kb on - strand, within EX31_RS10410at 293.533 kb on - strand, within EX31_RS10410at 293.535 kb on - strand, within EX31_RS10410at 293.535 kb on - strand, within EX31_RS10410at 293.684 kb on - strandat 293.684 kb on - strandat 293.684 kb on - strandat 293.747 kb on - strand, within EX31_RS10415at 293.747 kb on - strand, within EX31_RS10415at 293.758 kb on + strand, within EX31_RS10415at 293.758 kb on + strand, within EX31_RS10415at 293.758 kb on + strand, within EX31_RS10415at 293.759 kb on - strand, within EX31_RS10415at 293.759 kb on - strand, within EX31_RS10415at 293.759 kb on - strand, within EX31_RS10415at 293.759 kb on - strand, within EX31_RS10415at 293.760 kb on + strand, within EX31_RS10415at 293.760 kb on + strand, within EX31_RS10415at 293.760 kb on + strand, within EX31_RS10415at 293.760 kb on + strand, within EX31_RS10415at 293.760 kb on + strand, within EX31_RS10415at 293.760 kb on + strand, within EX31_RS10415at 293.761 kb on - strand, within EX31_RS10415at 293.761 kb on - strand, within EX31_RS10415at 293.761 kb on - strand, within EX31_RS10415at 293.761 kb on - strand, within EX31_RS10415at 293.761 kb on - strand, within EX31_RS10415at 293.761 kb on - strand, within EX31_RS10415at 293.761 kb on - strand, within EX31_RS10415at 293.761 kb on - strand, within EX31_RS10415at 293.761 kb on - strand, within EX31_RS10415at 293.761 kb on - strand, within EX31_RS10415at 293.761 kb on - strand, within EX31_RS10415at 293.761 kb on - strand, within EX31_RS10415at 293.761 kb on - strand, within EX31_RS10415at 293.762 kb on + strand, within EX31_RS10415at 293.762 kb on + strand, within EX31_RS10415at 293.762 kb on + strand, within EX31_RS10415at 293.762 kb on + strand, within EX31_RS10415at 293.763 kb on - strand, within EX31_RS10415at 293.763 kb on - strand, within EX31_RS10415at 293.763 kb on - strand, within EX31_RS10415at 293.763 kb on - strand, within EX31_RS10415at 293.765 kb on + strand, within EX31_RS10415at 293.766 kb on - strand, within EX31_RS10415at 293.869 kb on - strand, within EX31_RS10415at 293.939 kb on - strand, within EX31_RS10415at 293.942 kb on - strand, within EX31_RS10415at 293.994 kb on + strand, within EX31_RS10415at 293.995 kb on - strand, within EX31_RS10415at 293.995 kb on - strand, within EX31_RS10415at 293.995 kb on - strand, within EX31_RS10415at 293.995 kb on - strand, within EX31_RS10415at 293.995 kb on - strand, within EX31_RS10415at 294.034 kb on - strand, within EX31_RS10415at 294.045 kb on - strand, within EX31_RS10415at 294.059 kb on - strand, within EX31_RS10415at 294.059 kb on - strand, within EX31_RS10415at 294.179 kb on + strand, within EX31_RS10415at 294.282 kb on + strand, within EX31_RS10415at 294.338 kb on + strand, within EX31_RS10415at 294.338 kb on + strand, within EX31_RS10415at 294.338 kb on + strand, within EX31_RS10415at 294.339 kb on - strand, within EX31_RS10415at 294.368 kb on - strand, within EX31_RS10415at 294.418 kb on + strand, within EX31_RS10415at 294.418 kb on + strand, within EX31_RS10415at 294.419 kb on - strand, within EX31_RS10415at 294.492 kb on + strand, within EX31_RS10415at 294.514 kb on + strand, within EX31_RS10415at 294.514 kb on + strand, within EX31_RS10415at 294.514 kb on + strand, within EX31_RS10415at 294.514 kb on + strand, within EX31_RS10415at 294.515 kb on - strand, within EX31_RS10415at 294.515 kb on - strand, within EX31_RS10415at 294.516 kb on + strand, within EX31_RS10415at 294.517 kb on - strand, within EX31_RS10415at 294.517 kb on - strand, within EX31_RS10415at 294.528 kb on + strand, within EX31_RS10415at 294.529 kb on - strand, within EX31_RS10415

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
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291,989 + -3.0
292,014 + -0.7
292,014 + -0.8
292,015 - -0.1
292,035 + EX31_RS10405 0.11 -0.4
292,035 + EX31_RS10405 0.11 -0.4
292,036 - EX31_RS10405 0.12 -1.5
292,039 + EX31_RS10405 0.12 +0.3
292,039 + EX31_RS10405 0.12 -0.4
292,040 - EX31_RS10405 0.12 +0.2
292,040 - EX31_RS10405 0.12 -0.7
292,101 - EX31_RS10405 0.19 +1.0
292,101 - EX31_RS10405 0.19 -0.3
292,128 + EX31_RS10405 0.22 -0.1
292,129 - EX31_RS10405 0.22 -0.2
292,269 - EX31_RS10405 0.37 +0.3
292,317 - EX31_RS10405 0.42 +0.2
292,327 - EX31_RS10405 0.43 -2.2
292,327 - EX31_RS10405 0.43 -0.5
292,333 + EX31_RS10405 0.44 +0.1
292,333 + EX31_RS10405 0.44 +0.3
292,334 - EX31_RS10405 0.44 +0.7
292,446 - EX31_RS10405 0.56 -0.2
292,446 - EX31_RS10405 0.56 +1.2
292,482 + EX31_RS10405 0.60 -0.4
292,482 + EX31_RS10405 0.60 -0.3
292,483 - EX31_RS10405 0.60 -0.3
292,483 - EX31_RS10405 0.60 +0.2
292,483 - EX31_RS10405 0.60 +1.0
292,483 - EX31_RS10405 0.60 +0.5
292,483 - EX31_RS10405 0.60 -3.1
292,483 - EX31_RS10405 0.60 -1.1
292,483 - EX31_RS10405 0.60 +0.3
292,483 - EX31_RS10405 0.60 +0.6
292,483 - EX31_RS10405 0.60 +1.4
292,483 - EX31_RS10405 0.60 -0.7
292,483 - EX31_RS10405 0.60 +0.2
292,654 + EX31_RS10405 0.79 -0.6
292,654 + EX31_RS10405 0.79 -1.4
292,655 - EX31_RS10405 0.79 +0.2
292,655 - EX31_RS10405 0.79 -0.2
292,692 - EX31_RS10405 0.83 -2.0
292,747 - EX31_RS10405 0.89 -0.5
292,767 + +0.5
292,788 - -0.7
292,788 - -2.4
292,912 - -0.4
292,915 - +0.0
292,919 + +0.4
292,919 + +0.6
292,935 + -3.0
292,935 + +0.5
292,936 - +0.7
292,936 - +0.6
292,936 - -0.5
292,936 - -0.2
292,936 - +0.2
293,001 + +0.3
293,002 - -0.0
293,079 + EX31_RS10410 0.19 -1.0
293,084 + EX31_RS10410 0.20 -1.2
293,260 - EX31_RS10410 0.47 -1.4
293,304 - EX31_RS10410 0.53 +1.5
293,392 + EX31_RS10410 0.67 +0.4
293,392 + EX31_RS10410 0.67 -1.0
293,392 + EX31_RS10410 0.67 +0.1
293,393 - EX31_RS10410 0.67 -0.5
293,436 - EX31_RS10410 0.73 -0.9
293,437 + EX31_RS10410 0.74 +0.5
293,533 - EX31_RS10410 0.88 -1.8
293,533 - EX31_RS10410 0.88 -0.8
293,533 - EX31_RS10410 0.88 +1.2
293,535 - EX31_RS10410 0.88 -0.2
293,535 - EX31_RS10410 0.88 -2.7
293,684 - +0.1
293,684 - +0.1
293,684 - -0.1
293,747 - EX31_RS10415 0.14 +1.3
293,747 - EX31_RS10415 0.14 -0.3
293,758 + EX31_RS10415 0.15 -1.1
293,758 + EX31_RS10415 0.15 +1.3
293,758 + EX31_RS10415 0.15 -2.9
293,759 - EX31_RS10415 0.15 -0.9
293,759 - EX31_RS10415 0.15 -1.0
293,759 - EX31_RS10415 0.15 -2.1
293,759 - EX31_RS10415 0.15 +0.1
293,760 + EX31_RS10415 0.15 -0.3
293,760 + EX31_RS10415 0.15 -1.2
293,760 + EX31_RS10415 0.15 -0.7
293,760 + EX31_RS10415 0.15 -1.1
293,760 + EX31_RS10415 0.15 -0.6
293,760 + EX31_RS10415 0.15 +0.9
293,761 - EX31_RS10415 0.15 -0.6
293,761 - EX31_RS10415 0.15 +0.7
293,761 - EX31_RS10415 0.15 +1.3
293,761 - EX31_RS10415 0.15 +0.6
293,761 - EX31_RS10415 0.15 +0.1
293,761 - EX31_RS10415 0.15 -0.5
293,761 - EX31_RS10415 0.15 -0.4
293,761 - EX31_RS10415 0.15 -0.1
293,761 - EX31_RS10415 0.15 -2.7
293,761 - EX31_RS10415 0.15 +0.7
293,761 - EX31_RS10415 0.15 +1.7
293,761 - EX31_RS10415 0.15 -0.1
293,761 - EX31_RS10415 0.15 +0.8
293,762 + EX31_RS10415 0.16 -0.7
293,762 + EX31_RS10415 0.16 -0.7
293,762 + EX31_RS10415 0.16 +1.0
293,762 + EX31_RS10415 0.16 -0.2
293,763 - EX31_RS10415 0.16 -2.5
293,763 - EX31_RS10415 0.16 -1.0
293,763 - EX31_RS10415 0.16 +0.4
293,763 - EX31_RS10415 0.16 -1.7
293,765 + EX31_RS10415 0.16 -1.2
293,766 - EX31_RS10415 0.16 -1.0
293,869 - EX31_RS10415 0.24 -1.5
293,939 - EX31_RS10415 0.29 +0.6
293,942 - EX31_RS10415 0.29 -1.2
293,994 + EX31_RS10415 0.33 -0.6
293,995 - EX31_RS10415 0.33 +1.3
293,995 - EX31_RS10415 0.33 -1.7
293,995 - EX31_RS10415 0.33 -0.0
293,995 - EX31_RS10415 0.33 +0.3
293,995 - EX31_RS10415 0.33 -0.9
294,034 - EX31_RS10415 0.36 +0.7
294,045 - EX31_RS10415 0.37 -0.1
294,059 - EX31_RS10415 0.38 +1.4
294,059 - EX31_RS10415 0.38 +0.3
294,179 + EX31_RS10415 0.47 +0.8
294,282 + EX31_RS10415 0.55 -2.5
294,338 + EX31_RS10415 0.59 -2.0
294,338 + EX31_RS10415 0.59 -0.1
294,338 + EX31_RS10415 0.59 +1.1
294,339 - EX31_RS10415 0.60 -0.3
294,368 - EX31_RS10415 0.62 -0.4
294,418 + EX31_RS10415 0.66 +2.8
294,418 + EX31_RS10415 0.66 +1.7
294,419 - EX31_RS10415 0.66 -2.6
294,492 + EX31_RS10415 0.71 -0.0
294,514 + EX31_RS10415 0.73 +0.4
294,514 + EX31_RS10415 0.73 +0.7
294,514 + EX31_RS10415 0.73 -0.6
294,514 + EX31_RS10415 0.73 -0.1
294,515 - EX31_RS10415 0.73 +1.4
294,515 - EX31_RS10415 0.73 +0.3
294,516 + EX31_RS10415 0.73 +0.2
294,517 - EX31_RS10415 0.73 -0.2
294,517 - EX31_RS10415 0.73 -1.2
294,528 + EX31_RS10415 0.74 +0.6
294,529 - EX31_RS10415 0.74 -0.2

Or see this region's nucleotide sequence