Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS10125 and EX31_RS10130 are separated by 1 nucleotides EX31_RS10130 and EX31_RS10135 are separated by 12 nucleotides
EX31_RS10125: EX31_RS10125 - ABC transporter ATP-binding protein, at 234,438 to 236,270
_RS10125
EX31_RS10130: EX31_RS10130 - M81 family metallopeptidase, at 236,272 to 237,705
_RS10130
EX31_RS10135: EX31_RS10135 - ROK family transcriptional regulator, at 237,718 to 238,857
_RS10135
Position (kb) 236
237
238 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 235.303 kb on + strand, within EX31_RS10125 at 235.303 kb on + strand, within EX31_RS10125 at 235.304 kb on - strand, within EX31_RS10125 at 235.492 kb on + strand, within EX31_RS10125 at 235.492 kb on + strand, within EX31_RS10125 at 235.493 kb on - strand, within EX31_RS10125 at 235.493 kb on - strand, within EX31_RS10125 at 235.556 kb on - strand, within EX31_RS10125 at 235.556 kb on - strand, within EX31_RS10125 at 235.556 kb on - strand, within EX31_RS10125 at 235.611 kb on - strand, within EX31_RS10125 at 235.721 kb on + strand, within EX31_RS10125 at 235.722 kb on - strand, within EX31_RS10125 at 235.722 kb on - strand, within EX31_RS10125 at 235.925 kb on + strand, within EX31_RS10125 at 235.926 kb on - strand, within EX31_RS10125 at 236.147 kb on - strand at 236.208 kb on - strand at 236.309 kb on + strand at 236.309 kb on + strand at 236.478 kb on + strand, within EX31_RS10130 at 236.479 kb on - strand, within EX31_RS10130 at 236.523 kb on - strand, within EX31_RS10130 at 236.684 kb on - strand, within EX31_RS10130 at 236.940 kb on - strand, within EX31_RS10130 at 237.039 kb on - strand, within EX31_RS10130 at 237.209 kb on - strand, within EX31_RS10130 at 237.209 kb on - strand, within EX31_RS10130 at 237.283 kb on - strand, within EX31_RS10130 at 237.283 kb on - strand, within EX31_RS10130 at 237.329 kb on + strand, within EX31_RS10130 at 237.329 kb on + strand, within EX31_RS10130 at 237.330 kb on - strand, within EX31_RS10130 at 237.416 kb on + strand, within EX31_RS10130 at 237.417 kb on - strand, within EX31_RS10130 at 237.417 kb on - strand, within EX31_RS10130 at 237.417 kb on - strand, within EX31_RS10130 at 237.441 kb on - strand, within EX31_RS10130 at 237.499 kb on - strand, within EX31_RS10130 at 237.503 kb on + strand, within EX31_RS10130 at 237.573 kb on - strand at 237.573 kb on - strand at 237.662 kb on + strand at 237.663 kb on - strand at 237.699 kb on + strand at 237.699 kb on + strand at 237.700 kb on - strand at 237.758 kb on - strand at 237.799 kb on - strand at 237.863 kb on - strand, within EX31_RS10135 at 237.863 kb on - strand, within EX31_RS10135 at 238.081 kb on - strand, within EX31_RS10135 at 238.081 kb on - strand, within EX31_RS10135 at 238.255 kb on - strand, within EX31_RS10135 at 238.667 kb on - strand, within EX31_RS10135 at 238.667 kb on - strand, within EX31_RS10135
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 235,303 + EX31_RS10125 0.47 -0.3 235,303 + EX31_RS10125 0.47 +1.8 235,304 - EX31_RS10125 0.47 +0.2 235,492 + EX31_RS10125 0.58 -1.3 235,492 + EX31_RS10125 0.58 -0.7 235,493 - EX31_RS10125 0.58 +1.7 235,493 - EX31_RS10125 0.58 +0.8 235,556 - EX31_RS10125 0.61 +1.3 235,556 - EX31_RS10125 0.61 -0.7 235,556 - EX31_RS10125 0.61 +0.8 235,611 - EX31_RS10125 0.64 +0.1 235,721 + EX31_RS10125 0.70 +1.1 235,722 - EX31_RS10125 0.70 -0.4 235,722 - EX31_RS10125 0.70 +0.7 235,925 + EX31_RS10125 0.81 -2.6 235,926 - EX31_RS10125 0.81 -0.9 236,147 - +0.1 236,208 - -0.1 236,309 + -0.1 236,309 + +0.7 236,478 + EX31_RS10130 0.14 +0.5 236,479 - EX31_RS10130 0.14 -0.8 236,523 - EX31_RS10130 0.18 -0.4 236,684 - EX31_RS10130 0.29 +0.0 236,940 - EX31_RS10130 0.47 +0.4 237,039 - EX31_RS10130 0.53 -1.1 237,209 - EX31_RS10130 0.65 +0.5 237,209 - EX31_RS10130 0.65 -0.9 237,283 - EX31_RS10130 0.71 +0.0 237,283 - EX31_RS10130 0.71 +0.0 237,329 + EX31_RS10130 0.74 -1.4 237,329 + EX31_RS10130 0.74 +1.0 237,330 - EX31_RS10130 0.74 +0.4 237,416 + EX31_RS10130 0.80 -0.4 237,417 - EX31_RS10130 0.80 +0.8 237,417 - EX31_RS10130 0.80 -1.3 237,417 - EX31_RS10130 0.80 -1.7 237,441 - EX31_RS10130 0.82 -0.9 237,499 - EX31_RS10130 0.86 -3.7 237,503 + EX31_RS10130 0.86 -0.9 237,573 - -2.0 237,573 - +0.5 237,662 + -2.1 237,663 - -0.1 237,699 + -0.6 237,699 + +0.7 237,700 - -0.0 237,758 - -0.7 237,799 - +0.7 237,863 - EX31_RS10135 0.13 -0.5 237,863 - EX31_RS10135 0.13 -0.4 238,081 - EX31_RS10135 0.32 +2.8 238,081 - EX31_RS10135 0.32 -1.2 238,255 - EX31_RS10135 0.47 -0.4 238,667 - EX31_RS10135 0.83 +0.8 238,667 - EX31_RS10135 0.83 +0.4
Or see this region's nucleotide sequence