Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS09215 and EX31_RS09220 are separated by 2 nucleotides EX31_RS09220 and EX31_RS09225 are separated by 64 nucleotides EX31_RS09225 and EX31_RS09230 are separated by 586 nucleotides
EX31_RS09215: EX31_RS09215 - MFS transporter, at 40,400 to 41,719
_RS09215
EX31_RS09220: EX31_RS09220 - MurR/RpiR family transcriptional regulator, at 41,722 to 42,576
_RS09220
EX31_RS09225: EX31_RS09225 - iron-containing alcohol dehydrogenase family protein, at 42,641 to 43,729
_RS09225
EX31_RS09230: EX31_RS09230 - LysR family transcriptional regulator, at 44,316 to 45,215
_RS09230
Position (kb) 42
43
44 Strain fitness (log2 ratio) -1
0
1
2 at 41.701 kb on - strand at 41.717 kb on + strand at 42.135 kb on + strand, within EX31_RS09220 at 42.139 kb on + strand, within EX31_RS09220 at 42.604 kb on + strand at 42.605 kb on - strand at 42.605 kb on - strand at 42.605 kb on - strand at 42.605 kb on - strand at 42.606 kb on + strand at 42.607 kb on - strand at 42.607 kb on - strand at 42.607 kb on - strand at 42.607 kb on - strand at 42.676 kb on - strand at 42.697 kb on + strand at 42.697 kb on + strand at 42.818 kb on + strand, within EX31_RS09225 at 42.819 kb on - strand, within EX31_RS09225 at 42.819 kb on - strand, within EX31_RS09225 at 43.412 kb on + strand, within EX31_RS09225 at 43.412 kb on + strand, within EX31_RS09225 at 43.413 kb on - strand, within EX31_RS09225 at 43.413 kb on - strand, within EX31_RS09225 at 43.447 kb on + strand, within EX31_RS09225 at 43.664 kb on - strand at 43.667 kb on - strand at 43.727 kb on + strand at 43.867 kb on + strand at 44.182 kb on + strand at 44.183 kb on - strand at 44.183 kb on - strand at 44.183 kb on - strand at 44.183 kb on - strand at 44.183 kb on - strand at 44.183 kb on - strand at 44.480 kb on - strand, within EX31_RS09230 at 44.551 kb on + strand, within EX31_RS09230 at 44.723 kb on + strand, within EX31_RS09230
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 41,701 - -1.1 41,717 + -0.0 42,135 + EX31_RS09220 0.48 +1.0 42,139 + EX31_RS09220 0.49 -0.6 42,604 + +0.3 42,605 - -0.7 42,605 - -0.0 42,605 - -0.2 42,605 - -0.7 42,606 + +1.5 42,607 - -0.3 42,607 - -0.0 42,607 - -0.1 42,607 - +0.4 42,676 - -1.4 42,697 + +0.5 42,697 + +0.7 42,818 + EX31_RS09225 0.16 +0.3 42,819 - EX31_RS09225 0.16 -0.7 42,819 - EX31_RS09225 0.16 -0.4 43,412 + EX31_RS09225 0.71 -0.6 43,412 + EX31_RS09225 0.71 -1.2 43,413 - EX31_RS09225 0.71 -0.3 43,413 - EX31_RS09225 0.71 +0.1 43,447 + EX31_RS09225 0.74 -0.8 43,664 - -0.5 43,667 - -0.6 43,727 + -0.4 43,867 + -1.5 44,182 + -0.1 44,183 - +1.2 44,183 - +1.0 44,183 - +2.2 44,183 - +1.5 44,183 - -0.0 44,183 - +0.1 44,480 - EX31_RS09230 0.18 -0.3 44,551 + EX31_RS09230 0.26 -1.2 44,723 + EX31_RS09230 0.45 +0.1
Or see this region's nucleotide sequence