Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS07550 and EX31_RS07555 are separated by 164 nucleotides
EX31_RS07550: EX31_RS07550 - AraC family transcriptional regulator, at 325,446 to 326,315
_RS07550
EX31_RS07555: EX31_RS07555 - glucose 1-dehydrogenase, at 326,480 to 327,232
_RS07555
Position (kb) 326
327
328 Strain fitness (log2 ratio) -2
-1
0
1 at 325.584 kb on + strand, within EX31_RS07550 at 325.628 kb on - strand, within EX31_RS07550 at 325.669 kb on + strand, within EX31_RS07550 at 325.809 kb on - strand, within EX31_RS07550 at 325.897 kb on - strand, within EX31_RS07550 at 325.897 kb on - strand, within EX31_RS07550 at 326.004 kb on - strand, within EX31_RS07550 at 326.025 kb on + strand, within EX31_RS07550 at 326.092 kb on - strand, within EX31_RS07550 at 326.106 kb on - strand, within EX31_RS07550 at 326.112 kb on - strand, within EX31_RS07550 at 326.112 kb on - strand, within EX31_RS07550 at 326.113 kb on + strand, within EX31_RS07550 at 326.113 kb on + strand, within EX31_RS07550 at 326.114 kb on - strand, within EX31_RS07550 at 326.114 kb on - strand, within EX31_RS07550 at 326.162 kb on + strand, within EX31_RS07550 at 326.197 kb on + strand, within EX31_RS07550 at 326.284 kb on - strand at 326.284 kb on - strand at 326.284 kb on - strand at 326.284 kb on - strand at 326.306 kb on + strand at 326.307 kb on - strand at 326.326 kb on - strand at 326.327 kb on + strand at 326.328 kb on - strand at 326.328 kb on - strand at 326.328 kb on - strand at 326.365 kb on + strand at 326.366 kb on - strand at 326.396 kb on + strand at 326.396 kb on + strand at 326.416 kb on - strand at 326.416 kb on - strand at 326.457 kb on + strand at 326.457 kb on + strand at 326.457 kb on + strand at 326.457 kb on + strand at 326.457 kb on + strand at 326.462 kb on + strand at 326.463 kb on - strand at 326.508 kb on + strand at 326.508 kb on + strand at 326.585 kb on + strand, within EX31_RS07555 at 326.881 kb on + strand, within EX31_RS07555 at 326.890 kb on - strand, within EX31_RS07555 at 326.896 kb on + strand, within EX31_RS07555 at 326.897 kb on - strand, within EX31_RS07555 at 326.897 kb on - strand, within EX31_RS07555 at 326.932 kb on + strand, within EX31_RS07555 at 327.253 kb on - strand at 327.255 kb on - strand at 327.255 kb on - strand at 327.344 kb on + strand at 327.399 kb on - strand at 327.421 kb on + strand at 327.450 kb on - strand at 327.450 kb on - strand at 327.450 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 325,584 + EX31_RS07550 0.16 +1.1 325,628 - EX31_RS07550 0.21 -0.1 325,669 + EX31_RS07550 0.26 +0.8 325,809 - EX31_RS07550 0.42 -1.2 325,897 - EX31_RS07550 0.52 +0.7 325,897 - EX31_RS07550 0.52 +0.4 326,004 - EX31_RS07550 0.64 +0.2 326,025 + EX31_RS07550 0.67 +0.1 326,092 - EX31_RS07550 0.74 +0.2 326,106 - EX31_RS07550 0.76 +0.7 326,112 - EX31_RS07550 0.77 -0.8 326,112 - EX31_RS07550 0.77 +0.6 326,113 + EX31_RS07550 0.77 -2.2 326,113 + EX31_RS07550 0.77 +0.0 326,114 - EX31_RS07550 0.77 +0.9 326,114 - EX31_RS07550 0.77 -1.7 326,162 + EX31_RS07550 0.82 -1.1 326,197 + EX31_RS07550 0.86 -0.5 326,284 - -0.4 326,284 - -0.9 326,284 - +0.3 326,284 - +1.3 326,306 + -1.8 326,307 - -0.7 326,326 - -0.6 326,327 + -0.1 326,328 - -0.5 326,328 - -1.5 326,328 - -1.4 326,365 + -1.6 326,366 - +0.9 326,396 + -0.0 326,396 + -0.9 326,416 - -0.7 326,416 - -2.1 326,457 + +0.6 326,457 + -0.2 326,457 + +1.5 326,457 + +0.5 326,457 + +1.0 326,462 + +0.6 326,463 - -1.0 326,508 + +0.1 326,508 + -0.3 326,585 + EX31_RS07555 0.14 -0.7 326,881 + EX31_RS07555 0.53 -0.8 326,890 - EX31_RS07555 0.54 +1.3 326,896 + EX31_RS07555 0.55 -1.3 326,897 - EX31_RS07555 0.55 -0.2 326,897 - EX31_RS07555 0.55 -1.9 326,932 + EX31_RS07555 0.60 +0.6 327,253 - -0.8 327,255 - -0.4 327,255 - -2.5 327,344 + +1.6 327,399 - -0.4 327,421 + +1.0 327,450 - -0.1 327,450 - -0.5 327,450 - +0.6
Or see this region's nucleotide sequence