Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS07210 and EX31_RS07215 are separated by 9 nucleotides EX31_RS07215 and EX31_RS07220 are separated by 535 nucleotides
EX31_RS07210: EX31_RS07210 - Re/Si-specific NAD(P)(+) transhydrogenase subunit beta, at 239,544 to 240,935
_RS07210
EX31_RS07215: EX31_RS07215 - Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha, at 240,945 to 242,474
_RS07215
EX31_RS07220: EX31_RS07220 - DUF1471 domain-containing protein, at 243,010 to 243,963
_RS07220
Position (kb) 240
241
242
243 Strain fitness (log2 ratio) -2
-1
0
1
2 at 240.152 kb on + strand, within EX31_RS07210 at 240.153 kb on - strand, within EX31_RS07210 at 240.153 kb on - strand, within EX31_RS07210 at 240.161 kb on + strand, within EX31_RS07210 at 240.161 kb on + strand, within EX31_RS07210 at 240.162 kb on - strand, within EX31_RS07210 at 240.164 kb on - strand, within EX31_RS07210 at 240.164 kb on - strand, within EX31_RS07210 at 240.548 kb on + strand, within EX31_RS07210 at 240.559 kb on - strand, within EX31_RS07210 at 240.559 kb on - strand, within EX31_RS07210 at 240.627 kb on - strand, within EX31_RS07210 at 240.905 kb on + strand at 240.905 kb on + strand at 240.905 kb on + strand at 240.905 kb on + strand at 240.906 kb on - strand at 240.906 kb on - strand at 240.908 kb on - strand at 240.908 kb on - strand at 240.908 kb on - strand at 240.935 kb on + strand at 240.935 kb on + strand at 240.935 kb on + strand at 240.936 kb on - strand at 240.936 kb on - strand at 240.936 kb on - strand at 240.936 kb on - strand at 240.936 kb on - strand at 240.936 kb on - strand at 240.936 kb on - strand at 240.936 kb on - strand at 240.936 kb on - strand at 240.937 kb on + strand at 240.937 kb on + strand at 240.937 kb on + strand at 240.938 kb on - strand at 240.938 kb on - strand at 240.938 kb on - strand at 240.938 kb on - strand at 240.946 kb on + strand at 241.127 kb on + strand, within EX31_RS07215 at 241.160 kb on - strand, within EX31_RS07215 at 241.251 kb on - strand, within EX31_RS07215 at 241.251 kb on - strand, within EX31_RS07215 at 241.262 kb on + strand, within EX31_RS07215 at 241.263 kb on - strand, within EX31_RS07215 at 241.402 kb on - strand, within EX31_RS07215 at 241.402 kb on - strand, within EX31_RS07215 at 241.588 kb on - strand, within EX31_RS07215 at 241.770 kb on - strand, within EX31_RS07215 at 242.115 kb on - strand, within EX31_RS07215 at 242.274 kb on - strand, within EX31_RS07215 at 242.286 kb on + strand, within EX31_RS07215 at 242.287 kb on - strand, within EX31_RS07215 at 242.287 kb on - strand, within EX31_RS07215 at 242.461 kb on - strand at 242.469 kb on - strand at 242.474 kb on + strand at 242.475 kb on - strand at 242.475 kb on - strand at 242.478 kb on - strand at 242.478 kb on - strand at 242.478 kb on - strand at 242.478 kb on - strand at 242.531 kb on + strand at 242.612 kb on - strand at 242.635 kb on - strand at 242.642 kb on - strand at 242.698 kb on + strand at 242.711 kb on - strand at 242.750 kb on - strand at 242.755 kb on - strand at 242.795 kb on + strand at 242.800 kb on - strand at 242.823 kb on + strand at 242.836 kb on + strand at 242.839 kb on - strand at 242.841 kb on - strand at 242.841 kb on - strand at 242.841 kb on - strand at 242.841 kb on - strand at 242.841 kb on - strand at 242.845 kb on + strand at 242.857 kb on + strand at 242.874 kb on - strand at 242.925 kb on + strand at 242.925 kb on + strand at 242.926 kb on - strand at 242.926 kb on - strand at 242.926 kb on - strand at 242.984 kb on + strand at 242.984 kb on + strand at 242.984 kb on + strand at 242.984 kb on + strand at 243.135 kb on + strand, within EX31_RS07220 at 243.136 kb on - strand, within EX31_RS07220 at 243.138 kb on + strand, within EX31_RS07220 at 243.212 kb on - strand, within EX31_RS07220 at 243.241 kb on - strand, within EX31_RS07220 at 243.263 kb on + strand, within EX31_RS07220 at 243.277 kb on + strand, within EX31_RS07220 at 243.277 kb on + strand, within EX31_RS07220 at 243.277 kb on + strand, within EX31_RS07220 at 243.349 kb on - strand, within EX31_RS07220 at 243.435 kb on + strand, within EX31_RS07220 at 243.463 kb on + strand, within EX31_RS07220
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 240,152 + EX31_RS07210 0.44 -0.3 240,153 - EX31_RS07210 0.44 -0.6 240,153 - EX31_RS07210 0.44 +0.3 240,161 + EX31_RS07210 0.44 +0.5 240,161 + EX31_RS07210 0.44 +1.6 240,162 - EX31_RS07210 0.44 +0.7 240,164 - EX31_RS07210 0.45 +0.3 240,164 - EX31_RS07210 0.45 -0.1 240,548 + EX31_RS07210 0.72 -0.5 240,559 - EX31_RS07210 0.73 -0.1 240,559 - EX31_RS07210 0.73 -0.3 240,627 - EX31_RS07210 0.78 -1.4 240,905 + -1.1 240,905 + -1.5 240,905 + -0.2 240,905 + -0.4 240,906 - +0.3 240,906 - +0.5 240,908 - +0.2 240,908 - -2.2 240,908 - -0.1 240,935 + +0.3 240,935 + +0.3 240,935 + +0.2 240,936 - -0.3 240,936 - -1.4 240,936 - +0.2 240,936 - -1.2 240,936 - -0.3 240,936 - -0.7 240,936 - -0.5 240,936 - -0.5 240,936 - +0.3 240,937 + +0.9 240,937 + -0.9 240,937 + +1.2 240,938 - +0.5 240,938 - +1.3 240,938 - +0.7 240,938 - -1.0 240,946 + +0.5 241,127 + EX31_RS07215 0.12 -0.7 241,160 - EX31_RS07215 0.14 +1.1 241,251 - EX31_RS07215 0.20 -0.1 241,251 - EX31_RS07215 0.20 -0.1 241,262 + EX31_RS07215 0.21 +0.7 241,263 - EX31_RS07215 0.21 +0.8 241,402 - EX31_RS07215 0.30 -1.6 241,402 - EX31_RS07215 0.30 +0.1 241,588 - EX31_RS07215 0.42 +0.9 241,770 - EX31_RS07215 0.54 +0.5 242,115 - EX31_RS07215 0.76 +0.4 242,274 - EX31_RS07215 0.87 -0.5 242,286 + EX31_RS07215 0.88 -0.9 242,287 - EX31_RS07215 0.88 +0.9 242,287 - EX31_RS07215 0.88 -0.7 242,461 - +0.1 242,469 - +1.0 242,474 + -0.1 242,475 - -0.6 242,475 - -0.3 242,478 - -0.9 242,478 - -2.3 242,478 - -1.9 242,478 - -1.2 242,531 + +2.4 242,612 - +0.1 242,635 - -0.2 242,642 - +0.4 242,698 + +0.6 242,711 - -0.3 242,750 - -1.2 242,755 - -0.6 242,795 + +0.7 242,800 - +0.8 242,823 + +1.2 242,836 + -2.5 242,839 - +0.1 242,841 - -0.4 242,841 - -0.6 242,841 - -1.8 242,841 - -1.5 242,841 - -1.5 242,845 + -1.4 242,857 + -0.7 242,874 - +1.2 242,925 + -1.1 242,925 + -0.7 242,926 - +0.4 242,926 - -2.2 242,926 - -0.2 242,984 + -0.6 242,984 + -0.7 242,984 + +0.3 242,984 + +0.6 243,135 + EX31_RS07220 0.13 +1.5 243,136 - EX31_RS07220 0.13 +0.9 243,138 + EX31_RS07220 0.13 -0.4 243,212 - EX31_RS07220 0.21 +1.0 243,241 - EX31_RS07220 0.24 -2.2 243,263 + EX31_RS07220 0.27 +0.1 243,277 + EX31_RS07220 0.28 +0.6 243,277 + EX31_RS07220 0.28 +0.9 243,277 + EX31_RS07220 0.28 +0.3 243,349 - EX31_RS07220 0.36 +0.8 243,435 + EX31_RS07220 0.45 -1.2 243,463 + EX31_RS07220 0.47 +0.4
Or see this region's nucleotide sequence