Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS05295 and EX31_RS05300 overlap by 29 nucleotides EX31_RS05300 and EX31_RS05305 are separated by 14 nucleotides EX31_RS05305 and EX31_RS05310 are separated by 137 nucleotides
EX31_RS05295: EX31_RS05295 - MFS transporter, at 196,823 to 198,037
_RS05295
EX31_RS05300: EX31_RS05300 - isocitrate lyase/phosphoenolpyruvate mutase family protein, at 198,009 to 198,761
_RS05300
EX31_RS05305: EX31_RS05305 - bifunctional transcriptional activator/DNA repair protein Ada, at 198,776 to 199,834
_RS05305
EX31_RS05310: EX31_RS05310 - peptidyl-dipeptidase Dcp, at 199,972 to 202,125
_RS05310
Position (kb) 198
199
200 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 197.804 kb on + strand, within EX31_RS05295 at 197.804 kb on + strand, within EX31_RS05295 at 197.805 kb on - strand, within EX31_RS05295 at 197.805 kb on - strand, within EX31_RS05295 at 197.805 kb on - strand, within EX31_RS05295 at 197.805 kb on - strand, within EX31_RS05295 at 197.849 kb on + strand, within EX31_RS05295 at 197.853 kb on - strand, within EX31_RS05295 at 197.921 kb on + strand at 197.921 kb on + strand at 197.921 kb on + strand at 197.922 kb on - strand at 197.922 kb on - strand at 198.013 kb on + strand at 198.013 kb on + strand at 198.013 kb on + strand at 198.013 kb on + strand at 198.013 kb on + strand at 198.013 kb on + strand at 198.014 kb on - strand at 198.014 kb on - strand at 198.014 kb on - strand at 198.014 kb on - strand at 198.014 kb on - strand at 198.036 kb on - strand at 198.056 kb on + strand at 198.057 kb on - strand at 198.058 kb on + strand at 198.058 kb on + strand at 198.058 kb on + strand at 198.058 kb on + strand at 198.059 kb on - strand at 198.059 kb on - strand at 198.059 kb on - strand at 198.059 kb on - strand at 198.059 kb on - strand at 198.059 kb on - strand at 198.059 kb on - strand at 198.073 kb on + strand at 198.073 kb on + strand at 198.074 kb on - strand at 198.074 kb on - strand at 198.074 kb on - strand at 198.138 kb on - strand, within EX31_RS05300 at 198.159 kb on + strand, within EX31_RS05300 at 198.160 kb on - strand, within EX31_RS05300 at 198.160 kb on - strand, within EX31_RS05300 at 198.160 kb on - strand, within EX31_RS05300 at 198.233 kb on + strand, within EX31_RS05300 at 198.234 kb on - strand, within EX31_RS05300 at 198.234 kb on - strand, within EX31_RS05300 at 198.235 kb on + strand, within EX31_RS05300 at 198.235 kb on + strand, within EX31_RS05300 at 198.236 kb on - strand, within EX31_RS05300 at 198.236 kb on - strand, within EX31_RS05300 at 198.236 kb on - strand, within EX31_RS05300 at 198.254 kb on + strand, within EX31_RS05300 at 198.254 kb on + strand, within EX31_RS05300 at 198.255 kb on - strand, within EX31_RS05300 at 198.326 kb on + strand, within EX31_RS05300 at 198.327 kb on - strand, within EX31_RS05300 at 198.327 kb on - strand, within EX31_RS05300 at 198.327 kb on - strand, within EX31_RS05300 at 198.330 kb on + strand, within EX31_RS05300 at 198.330 kb on + strand, within EX31_RS05300 at 198.330 kb on + strand, within EX31_RS05300 at 198.437 kb on + strand, within EX31_RS05300 at 198.437 kb on + strand, within EX31_RS05300 at 198.437 kb on + strand, within EX31_RS05300 at 198.437 kb on + strand, within EX31_RS05300 at 198.438 kb on - strand, within EX31_RS05300 at 198.438 kb on - strand, within EX31_RS05300 at 198.438 kb on - strand, within EX31_RS05300 at 198.438 kb on - strand, within EX31_RS05300 at 198.441 kb on - strand, within EX31_RS05300 at 198.441 kb on - strand, within EX31_RS05300 at 198.599 kb on - strand, within EX31_RS05300 at 198.694 kb on + strand at 198.694 kb on + strand at 198.695 kb on - strand at 198.695 kb on - strand at 198.695 kb on - strand at 198.696 kb on + strand at 198.696 kb on + strand at 198.696 kb on + strand at 198.697 kb on - strand at 198.830 kb on + strand at 198.975 kb on + strand, within EX31_RS05305 at 199.001 kb on - strand, within EX31_RS05305 at 199.063 kb on + strand, within EX31_RS05305 at 199.063 kb on + strand, within EX31_RS05305 at 199.064 kb on - strand, within EX31_RS05305 at 199.064 kb on - strand, within EX31_RS05305 at 199.089 kb on + strand, within EX31_RS05305 at 199.184 kb on - strand, within EX31_RS05305 at 199.184 kb on - strand, within EX31_RS05305 at 199.187 kb on + strand, within EX31_RS05305 at 199.188 kb on - strand, within EX31_RS05305 at 199.188 kb on - strand, within EX31_RS05305 at 199.188 kb on - strand, within EX31_RS05305 at 199.218 kb on + strand, within EX31_RS05305 at 199.218 kb on + strand, within EX31_RS05305 at 199.218 kb on + strand, within EX31_RS05305 at 199.218 kb on + strand, within EX31_RS05305 at 199.218 kb on + strand, within EX31_RS05305 at 199.219 kb on - strand, within EX31_RS05305 at 199.219 kb on - strand, within EX31_RS05305 at 199.219 kb on - strand, within EX31_RS05305 at 199.219 kb on - strand, within EX31_RS05305 at 199.219 kb on - strand, within EX31_RS05305 at 199.219 kb on - strand, within EX31_RS05305 at 199.219 kb on - strand, within EX31_RS05305 at 199.440 kb on - strand, within EX31_RS05305 at 199.481 kb on - strand, within EX31_RS05305 at 199.630 kb on + strand, within EX31_RS05305 at 199.674 kb on + strand, within EX31_RS05305 at 199.679 kb on + strand, within EX31_RS05305 at 199.696 kb on + strand, within EX31_RS05305 at 199.697 kb on - strand, within EX31_RS05305 at 199.771 kb on - strand at 199.800 kb on + strand at 199.800 kb on + strand at 199.800 kb on + strand at 199.801 kb on - strand at 199.801 kb on - strand at 199.801 kb on - strand at 199.821 kb on - strand at 199.872 kb on - strand at 199.917 kb on + strand at 199.921 kb on + strand at 199.921 kb on + strand at 199.967 kb on + strand at 199.968 kb on - strand at 200.174 kb on + strand at 200.174 kb on + strand at 200.174 kb on + strand at 200.174 kb on + strand at 200.175 kb on - strand at 200.175 kb on - strand at 200.180 kb on + strand at 200.180 kb on + strand at 200.180 kb on + strand at 200.180 kb on + strand at 200.180 kb on + strand at 200.181 kb on - strand at 200.181 kb on - strand at 200.181 kb on - strand at 200.181 kb on - strand at 200.181 kb on - strand at 200.181 kb on - strand at 200.222 kb on + strand, within EX31_RS05310 at 200.222 kb on + strand, within EX31_RS05310 at 200.223 kb on - strand, within EX31_RS05310 at 200.223 kb on - strand, within EX31_RS05310 at 200.249 kb on + strand, within EX31_RS05310 at 200.249 kb on + strand, within EX31_RS05310 at 200.249 kb on + strand, within EX31_RS05310 at 200.249 kb on + strand, within EX31_RS05310 at 200.249 kb on + strand, within EX31_RS05310 at 200.249 kb on + strand, within EX31_RS05310 at 200.249 kb on + strand, within EX31_RS05310 at 200.250 kb on - strand, within EX31_RS05310 at 200.250 kb on - strand, within EX31_RS05310 at 200.250 kb on - strand, within EX31_RS05310 at 200.265 kb on + strand, within EX31_RS05310 at 200.265 kb on + strand, within EX31_RS05310 at 200.266 kb on - strand, within EX31_RS05310 at 200.295 kb on + strand, within EX31_RS05310 at 200.296 kb on - strand, within EX31_RS05310 at 200.296 kb on - strand, within EX31_RS05310 at 200.382 kb on - strand, within EX31_RS05310 at 200.382 kb on - strand, within EX31_RS05310 at 200.382 kb on - strand, within EX31_RS05310 at 200.382 kb on - strand, within EX31_RS05310 at 200.454 kb on - strand, within EX31_RS05310 at 200.454 kb on - strand, within EX31_RS05310 at 200.454 kb on - strand, within EX31_RS05310 at 200.454 kb on - strand, within EX31_RS05310 at 200.616 kb on + strand, within EX31_RS05310 at 200.616 kb on + strand, within EX31_RS05310 at 200.616 kb on + strand, within EX31_RS05310 at 200.616 kb on + strand, within EX31_RS05310 at 200.616 kb on + strand, within EX31_RS05310 at 200.616 kb on + strand, within EX31_RS05310 at 200.617 kb on - strand, within EX31_RS05310 at 200.617 kb on - strand, within EX31_RS05310 at 200.617 kb on - strand, within EX31_RS05310 at 200.617 kb on - strand, within EX31_RS05310 at 200.617 kb on - strand, within EX31_RS05310 at 200.617 kb on - strand, within EX31_RS05310 at 200.617 kb on - strand, within EX31_RS05310 at 200.617 kb on - strand, within EX31_RS05310 at 200.617 kb on - strand, within EX31_RS05310 at 200.687 kb on + strand, within EX31_RS05310 at 200.687 kb on + strand, within EX31_RS05310 at 200.688 kb on - strand, within EX31_RS05310 at 200.688 kb on - strand, within EX31_RS05310 at 200.688 kb on - strand, within EX31_RS05310 at 200.688 kb on - strand, within EX31_RS05310 at 200.688 kb on - strand, within EX31_RS05310 at 200.729 kb on + strand, within EX31_RS05310 at 200.729 kb on + strand, within EX31_RS05310 at 200.729 kb on + strand, within EX31_RS05310 at 200.729 kb on + strand, within EX31_RS05310 at 200.729 kb on + strand, within EX31_RS05310 at 200.729 kb on + strand, within EX31_RS05310 at 200.729 kb on + strand, within EX31_RS05310 at 200.730 kb on - strand, within EX31_RS05310 at 200.730 kb on - strand, within EX31_RS05310 at 200.730 kb on - strand, within EX31_RS05310 at 200.730 kb on - strand, within EX31_RS05310 at 200.730 kb on - strand, within EX31_RS05310 at 200.757 kb on + strand, within EX31_RS05310 at 200.758 kb on - strand, within EX31_RS05310 at 200.758 kb on - strand, within EX31_RS05310 at 200.761 kb on - strand, within EX31_RS05310 at 200.772 kb on - strand, within EX31_RS05310 at 200.775 kb on - strand, within EX31_RS05310 at 200.775 kb on - strand, within EX31_RS05310 at 200.802 kb on + strand, within EX31_RS05310 at 200.803 kb on - strand, within EX31_RS05310
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 197,804 + EX31_RS05295 0.81 +0.0 197,804 + EX31_RS05295 0.81 -1.1 197,805 - EX31_RS05295 0.81 -0.3 197,805 - EX31_RS05295 0.81 +0.2 197,805 - EX31_RS05295 0.81 +0.2 197,805 - EX31_RS05295 0.81 +0.3 197,849 + EX31_RS05295 0.84 +0.2 197,853 - EX31_RS05295 0.85 +0.1 197,921 + -0.2 197,921 + -0.8 197,921 + +0.4 197,922 - +0.3 197,922 - -0.1 198,013 + -1.3 198,013 + +1.1 198,013 + +0.4 198,013 + -1.0 198,013 + -3.0 198,013 + +0.2 198,014 - +0.5 198,014 - -0.2 198,014 - +0.8 198,014 - -0.7 198,014 - -0.3 198,036 - +0.8 198,056 + -0.3 198,057 - +0.0 198,058 + -1.9 198,058 + +0.4 198,058 + +0.9 198,058 + -0.3 198,059 - +0.9 198,059 - -1.2 198,059 - +0.9 198,059 - -0.6 198,059 - +0.1 198,059 - +0.1 198,059 - -0.9 198,073 + -0.2 198,073 + +0.6 198,074 - +0.4 198,074 - +0.4 198,074 - +1.6 198,138 - EX31_RS05300 0.17 +0.6 198,159 + EX31_RS05300 0.20 +0.3 198,160 - EX31_RS05300 0.20 +0.4 198,160 - EX31_RS05300 0.20 +0.1 198,160 - EX31_RS05300 0.20 -1.9 198,233 + EX31_RS05300 0.30 +0.5 198,234 - EX31_RS05300 0.30 +0.0 198,234 - EX31_RS05300 0.30 +0.9 198,235 + EX31_RS05300 0.30 +1.4 198,235 + EX31_RS05300 0.30 -0.2 198,236 - EX31_RS05300 0.30 -0.4 198,236 - EX31_RS05300 0.30 +0.0 198,236 - EX31_RS05300 0.30 +0.1 198,254 + EX31_RS05300 0.33 -0.0 198,254 + EX31_RS05300 0.33 -0.2 198,255 - EX31_RS05300 0.33 +0.4 198,326 + EX31_RS05300 0.42 +1.5 198,327 - EX31_RS05300 0.42 +0.6 198,327 - EX31_RS05300 0.42 -0.7 198,327 - EX31_RS05300 0.42 +0.5 198,330 + EX31_RS05300 0.43 +0.6 198,330 + EX31_RS05300 0.43 +1.1 198,330 + EX31_RS05300 0.43 +0.4 198,437 + EX31_RS05300 0.57 -0.4 198,437 + EX31_RS05300 0.57 +0.3 198,437 + EX31_RS05300 0.57 +0.0 198,437 + EX31_RS05300 0.57 -1.2 198,438 - EX31_RS05300 0.57 -0.4 198,438 - EX31_RS05300 0.57 -0.7 198,438 - EX31_RS05300 0.57 -0.4 198,438 - EX31_RS05300 0.57 +0.3 198,441 - EX31_RS05300 0.57 +1.5 198,441 - EX31_RS05300 0.57 -0.2 198,599 - EX31_RS05300 0.78 +0.4 198,694 + +0.6 198,694 + +0.0 198,695 - +0.1 198,695 - -0.2 198,695 - +0.9 198,696 + -2.6 198,696 + -0.1 198,696 + -0.8 198,697 - -0.1 198,830 + +0.3 198,975 + EX31_RS05305 0.19 +0.7 199,001 - EX31_RS05305 0.21 -0.3 199,063 + EX31_RS05305 0.27 +0.3 199,063 + EX31_RS05305 0.27 +0.4 199,064 - EX31_RS05305 0.27 -0.8 199,064 - EX31_RS05305 0.27 -0.2 199,089 + EX31_RS05305 0.30 -0.7 199,184 - EX31_RS05305 0.39 -0.6 199,184 - EX31_RS05305 0.39 -0.6 199,187 + EX31_RS05305 0.39 -0.1 199,188 - EX31_RS05305 0.39 +0.6 199,188 - EX31_RS05305 0.39 -0.3 199,188 - EX31_RS05305 0.39 -0.3 199,218 + EX31_RS05305 0.42 +1.0 199,218 + EX31_RS05305 0.42 -0.5 199,218 + EX31_RS05305 0.42 -0.1 199,218 + EX31_RS05305 0.42 -0.0 199,218 + EX31_RS05305 0.42 -0.2 199,219 - EX31_RS05305 0.42 +0.1 199,219 - EX31_RS05305 0.42 -2.0 199,219 - EX31_RS05305 0.42 -0.2 199,219 - EX31_RS05305 0.42 -0.6 199,219 - EX31_RS05305 0.42 +0.2 199,219 - EX31_RS05305 0.42 +0.1 199,219 - EX31_RS05305 0.42 -0.5 199,440 - EX31_RS05305 0.63 -0.3 199,481 - EX31_RS05305 0.67 -1.0 199,630 + EX31_RS05305 0.81 -0.0 199,674 + EX31_RS05305 0.85 +0.6 199,679 + EX31_RS05305 0.85 +0.5 199,696 + EX31_RS05305 0.87 +0.4 199,697 - EX31_RS05305 0.87 +0.2 199,771 - -0.8 199,800 + -0.8 199,800 + -0.0 199,800 + +0.9 199,801 - +1.1 199,801 - -0.3 199,801 - +0.9 199,821 - -0.4 199,872 - +0.7 199,917 + +1.0 199,921 + +0.2 199,921 + -0.2 199,967 + +0.1 199,968 - -0.6 200,174 + -0.1 200,174 + -0.4 200,174 + +1.1 200,174 + +0.1 200,175 - -0.5 200,175 - -0.1 200,180 + +0.8 200,180 + -0.9 200,180 + -0.2 200,180 + -0.3 200,180 + +0.5 200,181 - +0.5 200,181 - -0.6 200,181 - -1.5 200,181 - -0.2 200,181 - -1.6 200,181 - +0.0 200,222 + EX31_RS05310 0.12 +0.2 200,222 + EX31_RS05310 0.12 -0.7 200,223 - EX31_RS05310 0.12 -0.0 200,223 - EX31_RS05310 0.12 -0.9 200,249 + EX31_RS05310 0.13 +2.1 200,249 + EX31_RS05310 0.13 +0.7 200,249 + EX31_RS05310 0.13 -0.5 200,249 + EX31_RS05310 0.13 +0.7 200,249 + EX31_RS05310 0.13 +0.1 200,249 + EX31_RS05310 0.13 +0.3 200,249 + EX31_RS05310 0.13 -1.2 200,250 - EX31_RS05310 0.13 +0.1 200,250 - EX31_RS05310 0.13 +0.1 200,250 - EX31_RS05310 0.13 +0.3 200,265 + EX31_RS05310 0.14 +0.1 200,265 + EX31_RS05310 0.14 +0.4 200,266 - EX31_RS05310 0.14 -0.0 200,295 + EX31_RS05310 0.15 +0.2 200,296 - EX31_RS05310 0.15 +0.5 200,296 - EX31_RS05310 0.15 +0.6 200,382 - EX31_RS05310 0.19 +0.4 200,382 - EX31_RS05310 0.19 -0.3 200,382 - EX31_RS05310 0.19 -0.5 200,382 - EX31_RS05310 0.19 -2.5 200,454 - EX31_RS05310 0.22 -0.5 200,454 - EX31_RS05310 0.22 +0.5 200,454 - EX31_RS05310 0.22 -0.9 200,454 - EX31_RS05310 0.22 +1.6 200,616 + EX31_RS05310 0.30 +1.1 200,616 + EX31_RS05310 0.30 +0.4 200,616 + EX31_RS05310 0.30 +0.0 200,616 + EX31_RS05310 0.30 -0.7 200,616 + EX31_RS05310 0.30 -0.7 200,616 + EX31_RS05310 0.30 +1.1 200,617 - EX31_RS05310 0.30 +0.9 200,617 - EX31_RS05310 0.30 -0.2 200,617 - EX31_RS05310 0.30 +1.1 200,617 - EX31_RS05310 0.30 +0.8 200,617 - EX31_RS05310 0.30 -0.1 200,617 - EX31_RS05310 0.30 -0.2 200,617 - EX31_RS05310 0.30 +0.6 200,617 - EX31_RS05310 0.30 +0.1 200,617 - EX31_RS05310 0.30 -0.2 200,687 + EX31_RS05310 0.33 +0.6 200,687 + EX31_RS05310 0.33 -1.0 200,688 - EX31_RS05310 0.33 -0.3 200,688 - EX31_RS05310 0.33 -1.4 200,688 - EX31_RS05310 0.33 +0.8 200,688 - EX31_RS05310 0.33 +0.8 200,688 - EX31_RS05310 0.33 -0.1 200,729 + EX31_RS05310 0.35 +0.5 200,729 + EX31_RS05310 0.35 +0.2 200,729 + EX31_RS05310 0.35 +0.1 200,729 + EX31_RS05310 0.35 +0.8 200,729 + EX31_RS05310 0.35 +1.3 200,729 + EX31_RS05310 0.35 +0.0 200,729 + EX31_RS05310 0.35 +0.2 200,730 - EX31_RS05310 0.35 +0.5 200,730 - EX31_RS05310 0.35 -0.9 200,730 - EX31_RS05310 0.35 +0.2 200,730 - EX31_RS05310 0.35 +1.1 200,730 - EX31_RS05310 0.35 -1.8 200,757 + EX31_RS05310 0.36 -0.7 200,758 - EX31_RS05310 0.36 -0.0 200,758 - EX31_RS05310 0.36 -0.2 200,761 - EX31_RS05310 0.37 -0.0 200,772 - EX31_RS05310 0.37 +0.1 200,775 - EX31_RS05310 0.37 -0.3 200,775 - EX31_RS05310 0.37 +0.2 200,802 + EX31_RS05310 0.39 -0.0 200,803 - EX31_RS05310 0.39 +0.4
Or see this region's nucleotide sequence