Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS25060 and EX31_RS01535 are separated by 554 nucleotides EX31_RS01535 and EX31_RS25715 are separated by 90 nucleotides
EX31_RS25060: EX31_RS25060 - DUF2767 family protein, at 343,652 to 343,852
_RS25060
EX31_RS01535: EX31_RS01535 - hypothetical protein, at 344,407 to 344,598
_RS01535
EX31_RS25715: EX31_RS25715 - hypothetical protein, at 344,689 to 344,904
_RS25715
Position (kb) 344
345 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 343.408 kb on - strand at 343.419 kb on + strand at 343.439 kb on - strand at 343.448 kb on + strand at 343.448 kb on + strand at 343.522 kb on + strand at 343.532 kb on + strand at 343.532 kb on + strand at 343.533 kb on - strand at 343.533 kb on - strand at 343.534 kb on + strand at 343.534 kb on + strand at 343.534 kb on + strand at 343.534 kb on + strand at 343.534 kb on + strand at 343.535 kb on - strand at 343.535 kb on - strand at 343.535 kb on - strand at 343.535 kb on - strand at 343.535 kb on - strand at 343.538 kb on + strand at 343.538 kb on + strand at 343.538 kb on + strand at 343.539 kb on - strand at 343.539 kb on - strand at 343.542 kb on + strand at 343.542 kb on + strand at 343.543 kb on - strand at 343.543 kb on - strand at 343.574 kb on + strand at 343.616 kb on - strand at 343.653 kb on + strand at 343.654 kb on - strand at 343.668 kb on + strand at 343.668 kb on + strand at 343.669 kb on - strand at 343.673 kb on + strand, within EX31_RS25060 at 343.673 kb on + strand, within EX31_RS25060 at 343.709 kb on + strand, within EX31_RS25060 at 343.717 kb on + strand, within EX31_RS25060 at 343.717 kb on + strand, within EX31_RS25060 at 343.717 kb on + strand, within EX31_RS25060 at 343.832 kb on + strand, within EX31_RS25060 at 343.832 kb on + strand, within EX31_RS25060 at 343.833 kb on - strand at 343.833 kb on - strand at 343.987 kb on + strand at 343.987 kb on + strand at 343.988 kb on - strand at 344.012 kb on + strand at 344.013 kb on - strand at 344.013 kb on - strand at 344.030 kb on - strand at 344.033 kb on + strand at 344.034 kb on - strand at 344.038 kb on + strand at 344.067 kb on + strand at 344.068 kb on - strand at 344.068 kb on - strand at 344.068 kb on - strand at 344.068 kb on - strand at 344.068 kb on - strand at 344.068 kb on - strand at 344.068 kb on - strand at 344.068 kb on - strand at 344.073 kb on + strand at 344.074 kb on - strand at 344.075 kb on + strand at 344.076 kb on - strand at 344.076 kb on - strand at 344.089 kb on + strand at 344.089 kb on + strand at 344.090 kb on - strand at 344.090 kb on - strand at 344.101 kb on - strand at 344.138 kb on - strand at 344.188 kb on + strand at 344.201 kb on + strand at 344.227 kb on + strand at 344.259 kb on + strand at 344.259 kb on + strand at 344.259 kb on + strand at 344.259 kb on + strand at 344.260 kb on - strand at 344.264 kb on - strand at 344.280 kb on + strand at 344.280 kb on + strand at 344.305 kb on - strand at 344.313 kb on - strand at 344.313 kb on - strand at 344.313 kb on - strand at 344.315 kb on - strand at 344.315 kb on - strand at 344.315 kb on - strand at 344.316 kb on + strand at 344.317 kb on - strand at 344.328 kb on + strand at 344.346 kb on - strand at 344.360 kb on + strand at 344.360 kb on + strand at 344.361 kb on - strand at 344.415 kb on + strand at 344.519 kb on - strand, within EX31_RS01535 at 344.519 kb on - strand, within EX31_RS01535 at 344.521 kb on + strand, within EX31_RS01535 at 344.522 kb on - strand, within EX31_RS01535 at 344.522 kb on - strand, within EX31_RS01535 at 344.539 kb on + strand, within EX31_RS01535 at 344.539 kb on + strand, within EX31_RS01535 at 344.539 kb on + strand, within EX31_RS01535 at 344.540 kb on - strand, within EX31_RS01535 at 344.547 kb on + strand, within EX31_RS01535 at 344.547 kb on + strand, within EX31_RS01535 at 344.548 kb on - strand, within EX31_RS01535 at 344.572 kb on + strand, within EX31_RS01535 at 344.602 kb on - strand at 344.602 kb on - strand at 344.602 kb on - strand at 344.630 kb on + strand at 344.636 kb on - strand at 344.636 kb on - strand at 344.636 kb on - strand at 344.636 kb on - strand at 344.636 kb on - strand at 344.636 kb on - strand at 344.650 kb on + strand at 344.690 kb on + strand at 344.761 kb on - strand, within EX31_RS25715 at 344.761 kb on - strand, within EX31_RS25715 at 344.799 kb on + strand, within EX31_RS25715 at 344.802 kb on + strand, within EX31_RS25715 at 344.834 kb on - strand, within EX31_RS25715 at 344.890 kb on - strand at 344.892 kb on - strand at 344.892 kb on - strand at 344.892 kb on - strand at 344.892 kb on - strand at 344.983 kb on + strand at 345.033 kb on - strand at 345.071 kb on - strand at 345.088 kb on + strand at 345.089 kb on - strand at 345.089 kb on - strand at 345.109 kb on + strand at 345.188 kb on - strand at 345.204 kb on + strand at 345.205 kb on - strand at 345.250 kb on - strand at 345.253 kb on + strand at 345.253 kb on + strand at 345.254 kb on - strand at 345.254 kb on - strand at 345.297 kb on + strand at 345.297 kb on + strand at 345.297 kb on + strand at 345.297 kb on + strand at 345.297 kb on + strand at 345.298 kb on - strand at 345.298 kb on - strand at 345.298 kb on - strand at 345.298 kb on - strand at 345.298 kb on - strand at 345.299 kb on + strand at 345.299 kb on + strand at 345.299 kb on + strand at 345.299 kb on + strand at 345.299 kb on + strand at 345.299 kb on + strand at 345.299 kb on + strand at 345.300 kb on - strand at 345.300 kb on - strand at 345.300 kb on - strand at 345.300 kb on - strand at 345.300 kb on - strand at 345.300 kb on - strand at 345.300 kb on - strand at 345.300 kb on - strand at 345.300 kb on - strand at 345.300 kb on - strand at 345.300 kb on - strand at 345.300 kb on - strand at 345.300 kb on - strand at 345.310 kb on + strand at 345.311 kb on - strand at 345.336 kb on + strand at 345.338 kb on + strand at 345.592 kb on - strand at 345.593 kb on + strand at 345.593 kb on + strand at 345.593 kb on + strand at 345.593 kb on + strand at 345.593 kb on + strand at 345.594 kb on - strand at 345.594 kb on - strand at 345.594 kb on - strand at 345.594 kb on - strand at 345.594 kb on - strand at 345.594 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 343,408 - -2.1 343,419 + +0.5 343,439 - +0.0 343,448 + +1.2 343,448 + -0.2 343,522 + -0.4 343,532 + +0.4 343,532 + +0.7 343,533 - +0.8 343,533 - -0.5 343,534 + -2.7 343,534 + +0.8 343,534 + +0.8 343,534 + -0.2 343,534 + +0.0 343,535 - +0.7 343,535 - +1.5 343,535 - -0.4 343,535 - -0.5 343,535 - -0.1 343,538 + -0.6 343,538 + -1.8 343,538 + -0.5 343,539 - +1.0 343,539 - -0.3 343,542 + -0.5 343,542 + +0.2 343,543 - -1.4 343,543 - -0.7 343,574 + -1.6 343,616 - +0.3 343,653 + +0.6 343,654 - -0.3 343,668 + +0.8 343,668 + -1.6 343,669 - -1.3 343,673 + EX31_RS25060 0.10 +1.2 343,673 + EX31_RS25060 0.10 +0.1 343,709 + EX31_RS25060 0.28 -0.5 343,717 + EX31_RS25060 0.32 -2.2 343,717 + EX31_RS25060 0.32 +0.8 343,717 + EX31_RS25060 0.32 -0.3 343,832 + EX31_RS25060 0.90 +2.0 343,832 + EX31_RS25060 0.90 -0.3 343,833 - +0.9 343,833 - +0.5 343,987 + -0.6 343,987 + -0.6 343,988 - +0.6 344,012 + +1.2 344,013 - -1.0 344,013 - -0.3 344,030 - +1.1 344,033 + -1.6 344,034 - -1.9 344,038 + +0.9 344,067 + +0.8 344,068 - +1.0 344,068 - -0.6 344,068 - +0.5 344,068 - +0.7 344,068 - +0.1 344,068 - -0.6 344,068 - -0.4 344,068 - -0.1 344,073 + -1.0 344,074 - -0.3 344,075 + +1.7 344,076 - +0.3 344,076 - +0.3 344,089 + -1.2 344,089 + +0.5 344,090 - +1.2 344,090 - +1.4 344,101 - -1.2 344,138 - -0.7 344,188 + +0.6 344,201 + -0.1 344,227 + -0.6 344,259 + -0.1 344,259 + -0.7 344,259 + -2.1 344,259 + +1.1 344,260 - -1.3 344,264 - -0.5 344,280 + -0.0 344,280 + -0.6 344,305 - +1.0 344,313 - -0.3 344,313 - +0.1 344,313 - -0.4 344,315 - +0.5 344,315 - +0.1 344,315 - -0.8 344,316 + -0.4 344,317 - -1.2 344,328 + -1.0 344,346 - +1.6 344,360 + -0.4 344,360 + +0.2 344,361 - +0.8 344,415 + +0.5 344,519 - EX31_RS01535 0.58 -1.7 344,519 - EX31_RS01535 0.58 -1.2 344,521 + EX31_RS01535 0.59 +1.1 344,522 - EX31_RS01535 0.60 +0.2 344,522 - EX31_RS01535 0.60 +0.5 344,539 + EX31_RS01535 0.69 -0.1 344,539 + EX31_RS01535 0.69 -0.8 344,539 + EX31_RS01535 0.69 -0.1 344,540 - EX31_RS01535 0.69 -1.9 344,547 + EX31_RS01535 0.73 -0.4 344,547 + EX31_RS01535 0.73 -2.3 344,548 - EX31_RS01535 0.73 -1.1 344,572 + EX31_RS01535 0.86 -0.1 344,602 - +0.1 344,602 - -2.5 344,602 - -1.6 344,630 + +0.7 344,636 - +1.0 344,636 - -1.9 344,636 - +0.1 344,636 - -2.5 344,636 - +1.4 344,636 - +0.7 344,650 + -1.8 344,690 + +0.1 344,761 - EX31_RS25715 0.33 +0.1 344,761 - EX31_RS25715 0.33 -1.7 344,799 + EX31_RS25715 0.51 +0.4 344,802 + EX31_RS25715 0.52 +0.4 344,834 - EX31_RS25715 0.67 +0.0 344,890 - -0.3 344,892 - +0.9 344,892 - +0.3 344,892 - -2.2 344,892 - -0.1 344,983 + +1.0 345,033 - +0.3 345,071 - -0.6 345,088 + +0.8 345,089 - -1.5 345,089 - -0.8 345,109 + +0.6 345,188 - +0.6 345,204 + -0.1 345,205 - -0.2 345,250 - +1.1 345,253 + +0.5 345,253 + +0.7 345,254 - +1.3 345,254 - +0.5 345,297 + -0.5 345,297 + +0.7 345,297 + -0.7 345,297 + -0.2 345,297 + -1.5 345,298 - -1.5 345,298 - +0.7 345,298 - -0.2 345,298 - +0.6 345,298 - +1.1 345,299 + +0.0 345,299 + +1.5 345,299 + -1.4 345,299 + -1.5 345,299 + +0.8 345,299 + +0.7 345,299 + -0.3 345,300 - +0.7 345,300 - +0.4 345,300 - +1.1 345,300 - +0.3 345,300 - -0.3 345,300 - +1.5 345,300 - +1.2 345,300 - -2.4 345,300 - +1.2 345,300 - +0.4 345,300 - +0.0 345,300 - -0.4 345,300 - -0.6 345,310 + +1.5 345,311 - +0.6 345,336 + +1.0 345,338 + +1.4 345,592 - -0.6 345,593 + -2.8 345,593 + +1.0 345,593 + +0.7 345,593 + -2.6 345,593 + +1.3 345,594 - -0.5 345,594 - +0.4 345,594 - -0.5 345,594 - +0.1 345,594 - -1.2 345,594 - +0.4
Or see this region's nucleotide sequence