Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS00710 and EX31_RS00715 are separated by 125 nucleotides EX31_RS00715 and EX31_RS00720 are separated by 138 nucleotides
EX31_RS00710: EX31_RS00710 - HAMP domain-containing protein, at 150,959 to 152,623
_RS00710
EX31_RS00715: EX31_RS00715 - class A beta-lactamase, at 152,749 to 153,636
_RS00715
EX31_RS00720: EX31_RS00720 - hypothetical protein, at 153,775 to 154,152
_RS00720
Position (kb) 152
153
154 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 152.002 kb on + strand, within EX31_RS00710 at 152.002 kb on + strand, within EX31_RS00710 at 152.002 kb on + strand, within EX31_RS00710 at 152.002 kb on + strand, within EX31_RS00710 at 152.002 kb on + strand, within EX31_RS00710 at 152.003 kb on - strand, within EX31_RS00710 at 152.014 kb on + strand, within EX31_RS00710 at 152.014 kb on + strand, within EX31_RS00710 at 152.015 kb on - strand, within EX31_RS00710 at 152.276 kb on - strand, within EX31_RS00710 at 152.424 kb on + strand, within EX31_RS00710 at 152.450 kb on + strand, within EX31_RS00710 at 152.495 kb on - strand at 152.621 kb on + strand at 152.622 kb on - strand at 152.634 kb on - strand at 152.634 kb on - strand at 152.662 kb on + strand at 152.732 kb on + strand at 152.732 kb on + strand at 152.733 kb on - strand at 152.769 kb on + strand at 152.769 kb on + strand at 152.769 kb on + strand at 152.770 kb on - strand at 152.922 kb on + strand, within EX31_RS00715 at 152.922 kb on + strand, within EX31_RS00715 at 152.923 kb on - strand, within EX31_RS00715 at 153.012 kb on + strand, within EX31_RS00715 at 153.082 kb on + strand, within EX31_RS00715 at 153.154 kb on + strand, within EX31_RS00715 at 153.155 kb on - strand, within EX31_RS00715 at 153.166 kb on - strand, within EX31_RS00715 at 153.220 kb on + strand, within EX31_RS00715 at 153.228 kb on + strand, within EX31_RS00715 at 153.528 kb on + strand, within EX31_RS00715 at 153.549 kb on + strand at 153.549 kb on + strand at 153.549 kb on + strand at 153.550 kb on - strand at 153.639 kb on + strand at 153.640 kb on - strand at 153.705 kb on - strand at 153.705 kb on - strand at 153.735 kb on + strand at 153.735 kb on + strand at 153.736 kb on - strand at 153.736 kb on - strand at 153.736 kb on - strand at 153.802 kb on - strand at 153.952 kb on + strand, within EX31_RS00720 at 154.096 kb on + strand, within EX31_RS00720 at 154.096 kb on + strand, within EX31_RS00720 at 154.106 kb on + strand, within EX31_RS00720 at 154.106 kb on + strand, within EX31_RS00720 at 154.107 kb on - strand, within EX31_RS00720 at 154.107 kb on - strand, within EX31_RS00720 at 154.108 kb on + strand, within EX31_RS00720 at 154.108 kb on + strand, within EX31_RS00720 at 154.109 kb on - strand, within EX31_RS00720 at 154.175 kb on + strand at 154.176 kb on - strand at 154.176 kb on - strand at 154.177 kb on + strand at 154.177 kb on + strand at 154.177 kb on + strand at 154.178 kb on - strand at 154.180 kb on - strand at 154.194 kb on - strand at 154.203 kb on - strand at 154.205 kb on + strand at 154.205 kb on + strand at 154.239 kb on - strand at 154.243 kb on + strand at 154.243 kb on + strand at 154.244 kb on - strand at 154.244 kb on - strand at 154.244 kb on - strand at 154.256 kb on - strand at 154.280 kb on + strand at 154.280 kb on + strand at 154.295 kb on + strand at 154.299 kb on - strand at 154.311 kb on - strand at 154.312 kb on + strand at 154.312 kb on + strand at 154.313 kb on - strand at 154.328 kb on + strand at 154.328 kb on + strand at 154.329 kb on - strand at 154.387 kb on + strand at 154.399 kb on + strand at 154.435 kb on + strand at 154.435 kb on + strand at 154.435 kb on + strand at 154.435 kb on + strand at 154.436 kb on - strand at 154.436 kb on - strand at 154.436 kb on - strand at 154.436 kb on - strand at 154.436 kb on - strand at 154.436 kb on - strand at 154.488 kb on + strand at 154.489 kb on - strand at 154.492 kb on - strand at 154.578 kb on - strand at 154.616 kb on + strand at 154.616 kb on + strand at 154.616 kb on + strand at 154.616 kb on + strand at 154.618 kb on + strand at 154.618 kb on + strand at 154.618 kb on + strand at 154.618 kb on + strand at 154.618 kb on + strand at 154.619 kb on - strand at 154.636 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 152,002 + EX31_RS00710 0.63 +1.1 152,002 + EX31_RS00710 0.63 +0.2 152,002 + EX31_RS00710 0.63 -1.6 152,002 + EX31_RS00710 0.63 +0.7 152,002 + EX31_RS00710 0.63 +0.6 152,003 - EX31_RS00710 0.63 -1.0 152,014 + EX31_RS00710 0.63 +0.8 152,014 + EX31_RS00710 0.63 +0.6 152,015 - EX31_RS00710 0.63 +0.3 152,276 - EX31_RS00710 0.79 +1.4 152,424 + EX31_RS00710 0.88 +0.3 152,450 + EX31_RS00710 0.90 +0.0 152,495 - -2.8 152,621 + +0.2 152,622 - -1.5 152,634 - -0.1 152,634 - -1.9 152,662 + +0.7 152,732 + +1.0 152,732 + +0.7 152,733 - +0.5 152,769 + +0.2 152,769 + +1.5 152,769 + -0.8 152,770 - -1.2 152,922 + EX31_RS00715 0.19 -1.7 152,922 + EX31_RS00715 0.19 -0.8 152,923 - EX31_RS00715 0.20 -1.3 153,012 + EX31_RS00715 0.30 +0.4 153,082 + EX31_RS00715 0.38 -0.1 153,154 + EX31_RS00715 0.46 -2.6 153,155 - EX31_RS00715 0.46 -0.2 153,166 - EX31_RS00715 0.47 -1.2 153,220 + EX31_RS00715 0.53 -0.5 153,228 + EX31_RS00715 0.54 -1.5 153,528 + EX31_RS00715 0.88 +0.9 153,549 + -0.9 153,549 + -0.9 153,549 + -2.0 153,550 - -0.7 153,639 + -0.4 153,640 - +1.1 153,705 - -1.0 153,705 - -1.3 153,735 + +0.4 153,735 + -0.2 153,736 - -0.4 153,736 - +0.5 153,736 - -0.3 153,802 - -2.3 153,952 + EX31_RS00720 0.47 -0.1 154,096 + EX31_RS00720 0.85 +0.6 154,096 + EX31_RS00720 0.85 -3.1 154,106 + EX31_RS00720 0.88 -1.2 154,106 + EX31_RS00720 0.88 +0.1 154,107 - EX31_RS00720 0.88 +0.9 154,107 - EX31_RS00720 0.88 +1.0 154,108 + EX31_RS00720 0.88 -0.5 154,108 + EX31_RS00720 0.88 +1.0 154,109 - EX31_RS00720 0.88 +0.6 154,175 + +0.8 154,176 - -1.1 154,176 - -0.2 154,177 + -1.1 154,177 + +0.3 154,177 + +0.7 154,178 - +0.7 154,180 - +0.4 154,194 - +0.0 154,203 - -0.7 154,205 + +0.4 154,205 + -1.1 154,239 - +0.4 154,243 + -0.1 154,243 + -1.2 154,244 - +0.5 154,244 - +0.1 154,244 - +1.5 154,256 - -0.2 154,280 + -0.3 154,280 + -0.6 154,295 + +0.5 154,299 - +0.4 154,311 - -0.9 154,312 + +0.7 154,312 + -0.7 154,313 - +0.4 154,328 + +0.4 154,328 + +0.2 154,329 - -0.4 154,387 + +1.8 154,399 + -0.7 154,435 + +1.6 154,435 + -0.1 154,435 + +1.1 154,435 + +1.0 154,436 - -0.2 154,436 - -1.6 154,436 - -0.1 154,436 - -0.6 154,436 - +0.0 154,436 - +0.2 154,488 + -0.8 154,489 - +0.3 154,492 - -0.1 154,578 - +0.4 154,616 + +0.1 154,616 + -1.8 154,616 + +0.2 154,616 + +0.0 154,618 + -0.6 154,618 + -0.5 154,618 + +0.6 154,618 + -0.9 154,618 + -0.1 154,619 - -0.9 154,636 + +0.3
Or see this region's nucleotide sequence