Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS08215 and EX31_RS08220 are separated by 142 nucleotides EX31_RS08220 and EX31_RS08225 are separated by 176 nucleotides EX31_RS08225 and EX31_RS08230 overlap by 1 nucleotides
EX31_RS08215: EX31_RS08215 - G/U mismatch-specific DNA glycosylase, at 136,805 to 137,308
_RS08215
EX31_RS08220: EX31_RS08220 - tRNA-Ile, at 137,451 to 137,527
_RS08220
EX31_RS08225: EX31_RS08225 - Fe2+-enterobactin ABC transporter substrate-binding protein, at 137,704 to 138,672
_RS08225
EX31_RS08230: EX31_RS08230 - Fe(3+)-siderophore ABC transporter permease, at 138,672 to 139,673
_RS08230
Position (kb) 137
138
139 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 136.739 kb on + strand at 136.740 kb on - strand at 136.750 kb on + strand at 136.751 kb on - strand at 136.787 kb on + strand at 136.788 kb on - strand at 136.820 kb on + strand at 136.826 kb on + strand at 136.832 kb on + strand at 136.833 kb on - strand at 136.850 kb on + strand at 136.951 kb on + strand, within EX31_RS08215 at 136.951 kb on + strand, within EX31_RS08215 at 136.952 kb on - strand, within EX31_RS08215 at 136.969 kb on + strand, within EX31_RS08215 at 136.970 kb on - strand, within EX31_RS08215 at 136.970 kb on - strand, within EX31_RS08215 at 136.989 kb on - strand, within EX31_RS08215 at 137.013 kb on + strand, within EX31_RS08215 at 137.013 kb on + strand, within EX31_RS08215 at 137.013 kb on + strand, within EX31_RS08215 at 137.014 kb on - strand, within EX31_RS08215 at 137.107 kb on + strand, within EX31_RS08215 at 137.108 kb on - strand, within EX31_RS08215 at 137.108 kb on - strand, within EX31_RS08215 at 137.108 kb on - strand, within EX31_RS08215 at 137.155 kb on + strand, within EX31_RS08215 at 137.156 kb on - strand, within EX31_RS08215 at 137.160 kb on - strand, within EX31_RS08215 at 137.184 kb on + strand, within EX31_RS08215 at 137.184 kb on + strand, within EX31_RS08215 at 137.184 kb on + strand, within EX31_RS08215 at 137.184 kb on + strand, within EX31_RS08215 at 137.184 kb on + strand, within EX31_RS08215 at 137.184 kb on + strand, within EX31_RS08215 at 137.185 kb on - strand, within EX31_RS08215 at 137.185 kb on - strand, within EX31_RS08215 at 137.185 kb on - strand, within EX31_RS08215 at 137.188 kb on + strand, within EX31_RS08215 at 137.189 kb on - strand, within EX31_RS08215 at 137.189 kb on - strand, within EX31_RS08215 at 137.189 kb on - strand, within EX31_RS08215 at 137.189 kb on - strand, within EX31_RS08215 at 137.189 kb on - strand, within EX31_RS08215 at 137.189 kb on - strand, within EX31_RS08215 at 137.189 kb on - strand, within EX31_RS08215 at 137.189 kb on - strand, within EX31_RS08215 at 137.246 kb on + strand, within EX31_RS08215 at 137.296 kb on + strand at 137.296 kb on + strand at 137.296 kb on + strand at 137.296 kb on + strand at 137.296 kb on + strand at 137.296 kb on + strand at 137.296 kb on + strand at 137.296 kb on + strand at 137.297 kb on - strand at 137.297 kb on - strand at 137.297 kb on - strand at 137.297 kb on - strand at 137.302 kb on + strand at 137.309 kb on + strand at 137.310 kb on - strand at 137.319 kb on + strand at 137.320 kb on - strand at 137.320 kb on - strand at 137.326 kb on + strand at 137.327 kb on - strand at 137.327 kb on - strand at 137.327 kb on - strand at 137.327 kb on - strand at 137.327 kb on - strand at 137.330 kb on + strand at 137.339 kb on + strand at 137.340 kb on - strand at 137.340 kb on - strand at 137.340 kb on - strand at 137.341 kb on + strand at 137.341 kb on + strand at 137.341 kb on + strand at 137.341 kb on + strand at 137.341 kb on + strand at 137.342 kb on - strand at 137.342 kb on - strand at 137.342 kb on - strand at 137.342 kb on - strand at 137.345 kb on + strand at 137.345 kb on + strand at 137.372 kb on - strand at 137.409 kb on + strand at 137.409 kb on + strand at 137.409 kb on + strand at 137.409 kb on + strand at 137.409 kb on + strand at 137.409 kb on + strand at 137.409 kb on + strand at 137.409 kb on + strand at 137.409 kb on + strand at 137.409 kb on + strand at 137.410 kb on - strand at 137.410 kb on - strand at 137.410 kb on - strand at 137.410 kb on - strand at 137.410 kb on - strand at 137.410 kb on - strand at 137.410 kb on - strand at 137.410 kb on - strand at 137.565 kb on + strand at 137.592 kb on + strand at 137.592 kb on + strand at 137.593 kb on - strand at 137.661 kb on - strand at 137.663 kb on + strand at 137.663 kb on + strand at 137.664 kb on - strand at 137.664 kb on - strand at 137.664 kb on - strand at 137.805 kb on + strand, within EX31_RS08225 at 137.805 kb on + strand, within EX31_RS08225 at 137.805 kb on + strand, within EX31_RS08225 at 137.831 kb on + strand, within EX31_RS08225 at 137.831 kb on + strand, within EX31_RS08225 at 137.831 kb on + strand, within EX31_RS08225 at 137.831 kb on + strand, within EX31_RS08225 at 137.832 kb on - strand, within EX31_RS08225 at 137.832 kb on - strand, within EX31_RS08225 at 137.832 kb on - strand, within EX31_RS08225 at 137.832 kb on - strand, within EX31_RS08225 at 137.896 kb on - strand, within EX31_RS08225 at 137.934 kb on + strand, within EX31_RS08225 at 138.010 kb on + strand, within EX31_RS08225 at 138.010 kb on + strand, within EX31_RS08225 at 138.010 kb on + strand, within EX31_RS08225 at 138.010 kb on + strand, within EX31_RS08225 at 138.010 kb on + strand, within EX31_RS08225 at 138.011 kb on - strand, within EX31_RS08225 at 138.011 kb on - strand, within EX31_RS08225 at 138.011 kb on - strand, within EX31_RS08225 at 138.011 kb on - strand, within EX31_RS08225 at 138.066 kb on + strand, within EX31_RS08225 at 138.067 kb on - strand, within EX31_RS08225 at 138.067 kb on - strand, within EX31_RS08225 at 138.067 kb on - strand, within EX31_RS08225 at 138.103 kb on + strand, within EX31_RS08225 at 138.103 kb on + strand, within EX31_RS08225 at 138.145 kb on + strand, within EX31_RS08225 at 138.145 kb on + strand, within EX31_RS08225 at 138.145 kb on + strand, within EX31_RS08225 at 138.146 kb on - strand, within EX31_RS08225 at 138.154 kb on - strand, within EX31_RS08225 at 138.182 kb on + strand, within EX31_RS08225 at 138.183 kb on - strand, within EX31_RS08225 at 138.267 kb on - strand, within EX31_RS08225 at 138.267 kb on - strand, within EX31_RS08225 at 138.302 kb on - strand, within EX31_RS08225 at 138.371 kb on + strand, within EX31_RS08225 at 138.371 kb on + strand, within EX31_RS08225 at 138.371 kb on + strand, within EX31_RS08225 at 138.371 kb on + strand, within EX31_RS08225 at 138.372 kb on - strand, within EX31_RS08225 at 138.372 kb on - strand, within EX31_RS08225 at 138.372 kb on - strand, within EX31_RS08225 at 138.415 kb on + strand, within EX31_RS08225 at 138.416 kb on - strand, within EX31_RS08225 at 138.558 kb on - strand, within EX31_RS08225 at 138.583 kb on + strand at 138.583 kb on + strand at 138.584 kb on - strand at 138.619 kb on + strand at 138.620 kb on - strand at 138.663 kb on - strand at 138.663 kb on - strand at 138.944 kb on + strand, within EX31_RS08230 at 138.956 kb on + strand, within EX31_RS08230 at 138.956 kb on + strand, within EX31_RS08230 at 139.023 kb on + strand, within EX31_RS08230 at 139.023 kb on + strand, within EX31_RS08230 at 139.023 kb on + strand, within EX31_RS08230 at 139.023 kb on + strand, within EX31_RS08230 at 139.024 kb on - strand, within EX31_RS08230 at 139.112 kb on - strand, within EX31_RS08230 at 139.241 kb on + strand, within EX31_RS08230 at 139.242 kb on - strand, within EX31_RS08230 at 139.242 kb on - strand, within EX31_RS08230 at 139.244 kb on + strand, within EX31_RS08230 at 139.253 kb on + strand, within EX31_RS08230 at 139.254 kb on - strand, within EX31_RS08230 at 139.254 kb on - strand, within EX31_RS08230 at 139.297 kb on + strand, within EX31_RS08230 at 139.297 kb on + strand, within EX31_RS08230 at 139.298 kb on - strand, within EX31_RS08230 at 139.298 kb on - strand, within EX31_RS08230 at 139.298 kb on - strand, within EX31_RS08230 at 139.319 kb on + strand, within EX31_RS08230 at 139.320 kb on - strand, within EX31_RS08230 at 139.400 kb on + strand, within EX31_RS08230 at 139.400 kb on + strand, within EX31_RS08230 at 139.401 kb on - strand, within EX31_RS08230 at 139.401 kb on - strand, within EX31_RS08230 at 139.401 kb on - strand, within EX31_RS08230 at 139.469 kb on + strand, within EX31_RS08230 at 139.470 kb on - strand, within EX31_RS08230 at 139.470 kb on - strand, within EX31_RS08230 at 139.632 kb on - strand at 139.632 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 136,739 + -0.1 136,740 - -0.4 136,750 + +1.6 136,751 - -1.3 136,787 + +0.3 136,788 - -0.8 136,820 + -0.4 136,826 + -0.5 136,832 + +0.7 136,833 - -0.3 136,850 + -1.3 136,951 + EX31_RS08215 0.29 +0.0 136,951 + EX31_RS08215 0.29 -0.5 136,952 - EX31_RS08215 0.29 -0.8 136,969 + EX31_RS08215 0.33 -0.3 136,970 - EX31_RS08215 0.33 +0.4 136,970 - EX31_RS08215 0.33 +0.4 136,989 - EX31_RS08215 0.37 -0.7 137,013 + EX31_RS08215 0.41 +0.6 137,013 + EX31_RS08215 0.41 -0.7 137,013 + EX31_RS08215 0.41 +0.6 137,014 - EX31_RS08215 0.41 +0.5 137,107 + EX31_RS08215 0.60 -0.2 137,108 - EX31_RS08215 0.60 +0.1 137,108 - EX31_RS08215 0.60 +0.3 137,108 - EX31_RS08215 0.60 +1.3 137,155 + EX31_RS08215 0.69 -0.5 137,156 - EX31_RS08215 0.70 -0.4 137,160 - EX31_RS08215 0.70 -0.2 137,184 + EX31_RS08215 0.75 +0.6 137,184 + EX31_RS08215 0.75 -0.7 137,184 + EX31_RS08215 0.75 +0.9 137,184 + EX31_RS08215 0.75 +0.4 137,184 + EX31_RS08215 0.75 +1.0 137,184 + EX31_RS08215 0.75 -1.5 137,185 - EX31_RS08215 0.75 +0.1 137,185 - EX31_RS08215 0.75 -0.0 137,185 - EX31_RS08215 0.75 +0.5 137,188 + EX31_RS08215 0.76 +0.8 137,189 - EX31_RS08215 0.76 -0.3 137,189 - EX31_RS08215 0.76 +0.3 137,189 - EX31_RS08215 0.76 +0.3 137,189 - EX31_RS08215 0.76 +0.3 137,189 - EX31_RS08215 0.76 +0.3 137,189 - EX31_RS08215 0.76 +0.6 137,189 - EX31_RS08215 0.76 +0.1 137,189 - EX31_RS08215 0.76 +0.7 137,246 + EX31_RS08215 0.88 +0.4 137,296 + +1.4 137,296 + -0.8 137,296 + -0.9 137,296 + -0.8 137,296 + +1.1 137,296 + -0.5 137,296 + -0.1 137,296 + -0.3 137,297 - +1.4 137,297 - +0.2 137,297 - -0.5 137,297 - +0.6 137,302 + -1.2 137,309 + +1.3 137,310 - -0.7 137,319 + +1.3 137,320 - -0.3 137,320 - +0.6 137,326 + +0.1 137,327 - +1.1 137,327 - -0.3 137,327 - +0.9 137,327 - -0.0 137,327 - -0.4 137,330 + -0.2 137,339 + -1.8 137,340 - +0.5 137,340 - -0.6 137,340 - -0.0 137,341 + -1.8 137,341 + -0.1 137,341 + +0.1 137,341 + -1.0 137,341 + +0.4 137,342 - -0.4 137,342 - +0.9 137,342 - -0.2 137,342 - +0.0 137,345 + -0.3 137,345 + -0.2 137,372 - +0.8 137,409 + -0.6 137,409 + +0.3 137,409 + +0.1 137,409 + -0.0 137,409 + -0.3 137,409 + +0.8 137,409 + -1.4 137,409 + +0.1 137,409 + -0.8 137,409 + -0.3 137,410 - -0.0 137,410 - +0.2 137,410 - +0.7 137,410 - +0.7 137,410 - -0.1 137,410 - +0.3 137,410 - +0.0 137,410 - +0.5 137,565 + -0.4 137,592 + -0.9 137,592 + +1.3 137,593 - +0.4 137,661 - +0.4 137,663 + -2.1 137,663 + -1.2 137,664 - +0.1 137,664 - +0.2 137,664 - -0.2 137,805 + EX31_RS08225 0.10 -0.0 137,805 + EX31_RS08225 0.10 +1.2 137,805 + EX31_RS08225 0.10 -2.0 137,831 + EX31_RS08225 0.13 +0.3 137,831 + EX31_RS08225 0.13 -1.8 137,831 + EX31_RS08225 0.13 -1.0 137,831 + EX31_RS08225 0.13 -0.2 137,832 - EX31_RS08225 0.13 -1.7 137,832 - EX31_RS08225 0.13 -1.6 137,832 - EX31_RS08225 0.13 +1.2 137,832 - EX31_RS08225 0.13 +1.7 137,896 - EX31_RS08225 0.20 -3.2 137,934 + EX31_RS08225 0.24 -0.7 138,010 + EX31_RS08225 0.32 -0.5 138,010 + EX31_RS08225 0.32 -1.3 138,010 + EX31_RS08225 0.32 -0.1 138,010 + EX31_RS08225 0.32 +0.8 138,010 + EX31_RS08225 0.32 -0.1 138,011 - EX31_RS08225 0.32 -0.3 138,011 - EX31_RS08225 0.32 -0.4 138,011 - EX31_RS08225 0.32 -0.2 138,011 - EX31_RS08225 0.32 -0.2 138,066 + EX31_RS08225 0.37 -0.3 138,067 - EX31_RS08225 0.37 +0.6 138,067 - EX31_RS08225 0.37 +0.2 138,067 - EX31_RS08225 0.37 -0.2 138,103 + EX31_RS08225 0.41 -0.0 138,103 + EX31_RS08225 0.41 +0.1 138,145 + EX31_RS08225 0.46 -0.5 138,145 + EX31_RS08225 0.46 +0.5 138,145 + EX31_RS08225 0.46 +0.3 138,146 - EX31_RS08225 0.46 +0.6 138,154 - EX31_RS08225 0.46 +0.2 138,182 + EX31_RS08225 0.49 +0.6 138,183 - EX31_RS08225 0.49 -0.0 138,267 - EX31_RS08225 0.58 -1.5 138,267 - EX31_RS08225 0.58 +0.1 138,302 - EX31_RS08225 0.62 -0.6 138,371 + EX31_RS08225 0.69 -0.0 138,371 + EX31_RS08225 0.69 +0.6 138,371 + EX31_RS08225 0.69 +0.6 138,371 + EX31_RS08225 0.69 -0.2 138,372 - EX31_RS08225 0.69 -1.7 138,372 - EX31_RS08225 0.69 +0.2 138,372 - EX31_RS08225 0.69 -0.5 138,415 + EX31_RS08225 0.73 -0.2 138,416 - EX31_RS08225 0.73 -0.1 138,558 - EX31_RS08225 0.88 +0.5 138,583 + -0.0 138,583 + +0.2 138,584 - +0.2 138,619 + -0.9 138,620 - +0.0 138,663 - +1.2 138,663 - +0.8 138,944 + EX31_RS08230 0.27 +0.5 138,956 + EX31_RS08230 0.28 -0.6 138,956 + EX31_RS08230 0.28 -0.4 139,023 + EX31_RS08230 0.35 +0.0 139,023 + EX31_RS08230 0.35 +0.3 139,023 + EX31_RS08230 0.35 -0.5 139,023 + EX31_RS08230 0.35 -0.6 139,024 - EX31_RS08230 0.35 -0.3 139,112 - EX31_RS08230 0.44 +0.6 139,241 + EX31_RS08230 0.57 -0.4 139,242 - EX31_RS08230 0.57 +0.7 139,242 - EX31_RS08230 0.57 +0.5 139,244 + EX31_RS08230 0.57 +0.4 139,253 + EX31_RS08230 0.58 -0.3 139,254 - EX31_RS08230 0.58 +1.0 139,254 - EX31_RS08230 0.58 -0.3 139,297 + EX31_RS08230 0.62 +0.4 139,297 + EX31_RS08230 0.62 -0.5 139,298 - EX31_RS08230 0.62 -0.3 139,298 - EX31_RS08230 0.62 -2.4 139,298 - EX31_RS08230 0.62 +1.2 139,319 + EX31_RS08230 0.65 +0.3 139,320 - EX31_RS08230 0.65 +0.3 139,400 + EX31_RS08230 0.73 +0.1 139,400 + EX31_RS08230 0.73 -0.1 139,401 - EX31_RS08230 0.73 +0.9 139,401 - EX31_RS08230 0.73 -0.0 139,401 - EX31_RS08230 0.73 +0.7 139,469 + EX31_RS08230 0.80 -1.5 139,470 - EX31_RS08230 0.80 -0.3 139,470 - EX31_RS08230 0.80 +0.5 139,632 - -0.7 139,632 - -1.0
Or see this region's nucleotide sequence