Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS07235 and EX31_RS07240 overlap by 4 nucleotides EX31_RS07240 and EX31_RS07245 overlap by 1 nucleotides EX31_RS07245 and EX31_RS07250 overlap by 4 nucleotides
EX31_RS07235: EX31_RS07235 - ABC transporter permease, at 247,149 to 248,162
_RS07235
EX31_RS07240: EX31_RS07240 - ABC transporter permease, at 248,159 to 249,085
_RS07240
EX31_RS07245: EX31_RS07245 - ABC transporter ATP-binding protein, at 249,085 to 249,915
_RS07245
EX31_RS07250: EX31_RS07250 - ABC transporter ATP-binding protein, at 249,912 to 250,685
_RS07250
Position (kb) 248
249
250 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 247.200 kb on - strand at 247.200 kb on - strand at 247.243 kb on + strand at 247.359 kb on + strand, within EX31_RS07235 at 247.373 kb on - strand, within EX31_RS07235 at 247.478 kb on + strand, within EX31_RS07235 at 247.496 kb on + strand, within EX31_RS07235 at 247.561 kb on + strand, within EX31_RS07235 at 247.562 kb on - strand, within EX31_RS07235 at 247.562 kb on - strand, within EX31_RS07235 at 247.671 kb on + strand, within EX31_RS07235 at 247.706 kb on + strand, within EX31_RS07235 at 247.806 kb on + strand, within EX31_RS07235 at 247.806 kb on + strand, within EX31_RS07235 at 247.806 kb on + strand, within EX31_RS07235 at 247.807 kb on - strand, within EX31_RS07235 at 247.807 kb on - strand, within EX31_RS07235 at 247.807 kb on - strand, within EX31_RS07235 at 247.807 kb on - strand, within EX31_RS07235 at 247.807 kb on - strand, within EX31_RS07235 at 247.807 kb on - strand, within EX31_RS07235 at 247.827 kb on - strand, within EX31_RS07235 at 247.933 kb on + strand, within EX31_RS07235 at 247.962 kb on + strand, within EX31_RS07235 at 247.963 kb on - strand, within EX31_RS07235 at 248.029 kb on - strand, within EX31_RS07235 at 248.029 kb on - strand, within EX31_RS07235 at 248.100 kb on + strand at 248.101 kb on - strand at 248.101 kb on - strand at 248.179 kb on - strand at 248.314 kb on + strand, within EX31_RS07240 at 248.366 kb on + strand, within EX31_RS07240 at 248.367 kb on - strand, within EX31_RS07240 at 248.367 kb on - strand, within EX31_RS07240 at 248.482 kb on + strand, within EX31_RS07240 at 248.482 kb on + strand, within EX31_RS07240 at 248.483 kb on - strand, within EX31_RS07240 at 248.483 kb on - strand, within EX31_RS07240 at 248.504 kb on - strand, within EX31_RS07240 at 248.581 kb on + strand, within EX31_RS07240 at 248.711 kb on + strand, within EX31_RS07240 at 248.737 kb on + strand, within EX31_RS07240 at 248.738 kb on - strand, within EX31_RS07240 at 248.738 kb on - strand, within EX31_RS07240 at 248.815 kb on + strand, within EX31_RS07240 at 248.879 kb on - strand, within EX31_RS07240 at 248.908 kb on + strand, within EX31_RS07240 at 248.909 kb on - strand, within EX31_RS07240 at 249.096 kb on + strand at 249.111 kb on + strand at 249.111 kb on + strand at 249.114 kb on + strand at 249.114 kb on + strand at 249.115 kb on - strand at 249.350 kb on + strand, within EX31_RS07245 at 249.406 kb on - strand, within EX31_RS07245 at 249.406 kb on - strand, within EX31_RS07245 at 249.435 kb on + strand, within EX31_RS07245 at 249.564 kb on - strand, within EX31_RS07245 at 249.678 kb on - strand, within EX31_RS07245 at 249.761 kb on - strand, within EX31_RS07245 at 249.761 kb on - strand, within EX31_RS07245 at 249.820 kb on + strand, within EX31_RS07245 at 249.949 kb on + strand at 249.949 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 247,200 - +0.1 247,200 - -3.0 247,243 + -0.2 247,359 + EX31_RS07235 0.21 -0.9 247,373 - EX31_RS07235 0.22 -0.0 247,478 + EX31_RS07235 0.32 +0.3 247,496 + EX31_RS07235 0.34 -0.2 247,561 + EX31_RS07235 0.41 -2.1 247,562 - EX31_RS07235 0.41 -0.3 247,562 - EX31_RS07235 0.41 +0.3 247,671 + EX31_RS07235 0.51 -0.3 247,706 + EX31_RS07235 0.55 -1.4 247,806 + EX31_RS07235 0.65 +0.1 247,806 + EX31_RS07235 0.65 -1.7 247,806 + EX31_RS07235 0.65 -0.6 247,807 - EX31_RS07235 0.65 +0.7 247,807 - EX31_RS07235 0.65 -2.8 247,807 - EX31_RS07235 0.65 -0.4 247,807 - EX31_RS07235 0.65 +0.7 247,807 - EX31_RS07235 0.65 -0.2 247,807 - EX31_RS07235 0.65 -0.0 247,827 - EX31_RS07235 0.67 +0.3 247,933 + EX31_RS07235 0.77 -2.0 247,962 + EX31_RS07235 0.80 +1.6 247,963 - EX31_RS07235 0.80 -0.8 248,029 - EX31_RS07235 0.87 +0.5 248,029 - EX31_RS07235 0.87 -0.9 248,100 + -1.3 248,101 - -0.5 248,101 - +0.5 248,179 - -0.0 248,314 + EX31_RS07240 0.17 +0.1 248,366 + EX31_RS07240 0.22 +0.9 248,367 - EX31_RS07240 0.22 +1.0 248,367 - EX31_RS07240 0.22 -0.2 248,482 + EX31_RS07240 0.35 +1.2 248,482 + EX31_RS07240 0.35 +0.5 248,483 - EX31_RS07240 0.35 +1.4 248,483 - EX31_RS07240 0.35 -0.7 248,504 - EX31_RS07240 0.37 +0.3 248,581 + EX31_RS07240 0.46 -0.0 248,711 + EX31_RS07240 0.60 +0.2 248,737 + EX31_RS07240 0.62 +0.2 248,738 - EX31_RS07240 0.62 -0.6 248,738 - EX31_RS07240 0.62 +1.6 248,815 + EX31_RS07240 0.71 -0.6 248,879 - EX31_RS07240 0.78 -2.1 248,908 + EX31_RS07240 0.81 -0.9 248,909 - EX31_RS07240 0.81 -1.1 249,096 + +1.1 249,111 + -0.1 249,111 + -2.7 249,114 + +1.1 249,114 + +0.0 249,115 - +0.1 249,350 + EX31_RS07245 0.32 -1.4 249,406 - EX31_RS07245 0.39 -0.3 249,406 - EX31_RS07245 0.39 +0.8 249,435 + EX31_RS07245 0.42 -0.5 249,564 - EX31_RS07245 0.58 -0.4 249,678 - EX31_RS07245 0.71 -3.1 249,761 - EX31_RS07245 0.81 -0.3 249,761 - EX31_RS07245 0.81 -0.8 249,820 + EX31_RS07245 0.88 -0.0 249,949 + +0.0 249,949 + +2.2
Or see this region's nucleotide sequence