Strain Fitness in Rahnella sp. WP5 around EX31_RS05135

Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS05130 and EX31_RS05135 are separated by 41 nucleotidesEX31_RS05135 and EX31_RS05140 are separated by 139 nucleotides EX31_RS05130: EX31_RS05130 - HAMP domain-containing protein, at 161,981 to 163,636 _RS05130 EX31_RS05135: EX31_RS05135 - hypothetical protein, at 163,678 to 163,986 _RS05135 EX31_RS05140: EX31_RS05140 - NAD(P)/FAD-dependent oxidoreductase, at 164,126 to 165,328 _RS05140 Position (kb) 163 164Strain fitness (log2 ratio) -2 -1 0 1 2at 163.094 kb on - strand, within EX31_RS05130at 163.104 kb on + strand, within EX31_RS05130at 163.105 kb on - strand, within EX31_RS05130at 163.116 kb on + strand, within EX31_RS05130at 163.117 kb on - strand, within EX31_RS05130at 163.303 kb on + strand, within EX31_RS05130at 163.304 kb on - strand, within EX31_RS05130at 163.647 kb on - strandat 163.657 kb on + strandat 163.658 kb on - strandat 163.677 kb on + strandat 163.698 kb on + strandat 163.730 kb on + strand, within EX31_RS05135at 163.801 kb on + strand, within EX31_RS05135at 163.801 kb on + strand, within EX31_RS05135at 163.802 kb on - strand, within EX31_RS05135at 163.802 kb on - strand, within EX31_RS05135at 163.802 kb on - strand, within EX31_RS05135at 163.802 kb on - strand, within EX31_RS05135at 163.806 kb on + strand, within EX31_RS05135at 163.806 kb on + strand, within EX31_RS05135at 163.806 kb on + strand, within EX31_RS05135at 163.806 kb on + strand, within EX31_RS05135at 163.806 kb on + strand, within EX31_RS05135at 163.807 kb on - strand, within EX31_RS05135at 163.807 kb on - strand, within EX31_RS05135at 163.807 kb on - strand, within EX31_RS05135at 163.807 kb on - strand, within EX31_RS05135at 163.807 kb on - strand, within EX31_RS05135at 163.809 kb on + strand, within EX31_RS05135at 163.809 kb on + strand, within EX31_RS05135at 163.809 kb on + strand, within EX31_RS05135at 163.809 kb on + strand, within EX31_RS05135at 163.809 kb on + strand, within EX31_RS05135at 163.809 kb on + strand, within EX31_RS05135at 163.809 kb on + strand, within EX31_RS05135at 163.810 kb on - strand, within EX31_RS05135at 163.863 kb on + strand, within EX31_RS05135at 163.863 kb on + strand, within EX31_RS05135at 163.864 kb on - strand, within EX31_RS05135at 163.879 kb on + strand, within EX31_RS05135at 163.879 kb on + strand, within EX31_RS05135at 163.879 kb on + strand, within EX31_RS05135at 163.879 kb on + strand, within EX31_RS05135at 163.879 kb on + strand, within EX31_RS05135at 163.880 kb on - strand, within EX31_RS05135at 163.880 kb on - strand, within EX31_RS05135at 163.880 kb on - strand, within EX31_RS05135at 163.896 kb on + strand, within EX31_RS05135at 163.896 kb on + strand, within EX31_RS05135at 163.896 kb on + strand, within EX31_RS05135at 163.896 kb on + strand, within EX31_RS05135at 163.896 kb on + strand, within EX31_RS05135at 163.897 kb on - strand, within EX31_RS05135at 163.900 kb on - strand, within EX31_RS05135at 163.900 kb on - strand, within EX31_RS05135at 163.906 kb on + strand, within EX31_RS05135at 163.906 kb on + strand, within EX31_RS05135at 163.906 kb on + strand, within EX31_RS05135at 163.906 kb on + strand, within EX31_RS05135at 163.906 kb on + strand, within EX31_RS05135at 163.906 kb on + strand, within EX31_RS05135at 163.907 kb on - strand, within EX31_RS05135at 163.907 kb on - strand, within EX31_RS05135at 163.907 kb on - strand, within EX31_RS05135at 163.907 kb on - strand, within EX31_RS05135at 163.907 kb on - strand, within EX31_RS05135at 163.907 kb on - strand, within EX31_RS05135at 163.907 kb on - strand, within EX31_RS05135at 163.909 kb on + strand, within EX31_RS05135at 163.909 kb on + strand, within EX31_RS05135at 163.910 kb on - strand, within EX31_RS05135at 163.910 kb on - strand, within EX31_RS05135at 163.925 kb on + strand, within EX31_RS05135at 163.926 kb on - strand, within EX31_RS05135at 163.926 kb on - strand, within EX31_RS05135at 163.926 kb on - strand, within EX31_RS05135at 163.929 kb on + strand, within EX31_RS05135at 163.929 kb on + strand, within EX31_RS05135at 163.929 kb on + strand, within EX31_RS05135at 164.004 kb on + strandat 164.004 kb on + strandat 164.031 kb on + strandat 164.076 kb on - strandat 164.076 kb on - strandat 164.117 kb on + strandat 164.117 kb on + strandat 164.117 kb on + strandat 164.117 kb on + strandat 164.117 kb on + strandat 164.118 kb on - strandat 164.118 kb on - strandat 164.118 kb on - strandat 164.118 kb on - strandat 164.118 kb on - strandat 164.118 kb on - strandat 164.121 kb on + strandat 164.121 kb on + strandat 164.121 kb on + strandat 164.122 kb on - strandat 164.127 kb on + strandat 164.127 kb on + strandat 164.127 kb on + strandat 164.128 kb on - strandat 164.128 kb on - strandat 164.128 kb on - strandat 164.241 kb on + strandat 164.241 kb on + strandat 164.241 kb on + strandat 164.241 kb on + strandat 164.241 kb on + strandat 164.241 kb on + strandat 164.242 kb on - strandat 164.282 kb on + strand, within EX31_RS05140at 164.282 kb on + strand, within EX31_RS05140at 164.282 kb on + strand, within EX31_RS05140at 164.283 kb on - strand, within EX31_RS05140at 164.283 kb on - strand, within EX31_RS05140at 164.283 kb on - strand, within EX31_RS05140at 164.351 kb on + strand, within EX31_RS05140at 164.351 kb on + strand, within EX31_RS05140at 164.351 kb on + strand, within EX31_RS05140at 164.592 kb on + strand, within EX31_RS05140at 164.600 kb on + strand, within EX31_RS05140at 164.606 kb on + strand, within EX31_RS05140at 164.607 kb on - strand, within EX31_RS05140at 164.607 kb on - strand, within EX31_RS05140at 164.639 kb on - strand, within EX31_RS05140at 164.680 kb on + strand, within EX31_RS05140at 164.746 kb on + strand, within EX31_RS05140at 164.746 kb on + strand, within EX31_RS05140at 164.747 kb on - strand, within EX31_RS05140at 164.777 kb on + strand, within EX31_RS05140at 164.778 kb on - strand, within EX31_RS05140at 164.861 kb on - strand, within EX31_RS05140

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
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163,094 - EX31_RS05130 0.67 -0.2
163,104 + EX31_RS05130 0.68 +0.0
163,105 - EX31_RS05130 0.68 -0.2
163,116 + EX31_RS05130 0.69 +0.1
163,117 - EX31_RS05130 0.69 +0.2
163,303 + EX31_RS05130 0.80 -0.4
163,304 - EX31_RS05130 0.80 +0.4
163,647 - -0.8
163,657 + +0.6
163,658 - +0.5
163,677 + -0.8
163,698 + -1.2
163,730 + EX31_RS05135 0.17 -0.3
163,801 + EX31_RS05135 0.40 +0.4
163,801 + EX31_RS05135 0.40 -1.0
163,802 - EX31_RS05135 0.40 +0.4
163,802 - EX31_RS05135 0.40 +0.7
163,802 - EX31_RS05135 0.40 +0.7
163,802 - EX31_RS05135 0.40 +0.9
163,806 + EX31_RS05135 0.41 -0.1
163,806 + EX31_RS05135 0.41 +0.7
163,806 + EX31_RS05135 0.41 +0.1
163,806 + EX31_RS05135 0.41 -0.6
163,806 + EX31_RS05135 0.41 -1.1
163,807 - EX31_RS05135 0.42 -0.0
163,807 - EX31_RS05135 0.42 +0.4
163,807 - EX31_RS05135 0.42 +0.4
163,807 - EX31_RS05135 0.42 +0.5
163,807 - EX31_RS05135 0.42 +0.7
163,809 + EX31_RS05135 0.42 -0.8
163,809 + EX31_RS05135 0.42 -0.2
163,809 + EX31_RS05135 0.42 -0.8
163,809 + EX31_RS05135 0.42 +0.5
163,809 + EX31_RS05135 0.42 -0.5
163,809 + EX31_RS05135 0.42 -0.4
163,809 + EX31_RS05135 0.42 -2.2
163,810 - EX31_RS05135 0.43 +0.1
163,863 + EX31_RS05135 0.60 -0.2
163,863 + EX31_RS05135 0.60 +1.8
163,864 - EX31_RS05135 0.60 -1.6
163,879 + EX31_RS05135 0.65 +0.8
163,879 + EX31_RS05135 0.65 +1.9
163,879 + EX31_RS05135 0.65 -0.4
163,879 + EX31_RS05135 0.65 +0.8
163,879 + EX31_RS05135 0.65 -1.0
163,880 - EX31_RS05135 0.65 +0.4
163,880 - EX31_RS05135 0.65 +0.4
163,880 - EX31_RS05135 0.65 +0.1
163,896 + EX31_RS05135 0.71 -0.2
163,896 + EX31_RS05135 0.71 -1.6
163,896 + EX31_RS05135 0.71 -0.1
163,896 + EX31_RS05135 0.71 -1.1
163,896 + EX31_RS05135 0.71 +0.3
163,897 - EX31_RS05135 0.71 +0.2
163,900 - EX31_RS05135 0.72 +1.3
163,900 - EX31_RS05135 0.72 -1.5
163,906 + EX31_RS05135 0.74 +0.4
163,906 + EX31_RS05135 0.74 -0.9
163,906 + EX31_RS05135 0.74 +0.2
163,906 + EX31_RS05135 0.74 +0.2
163,906 + EX31_RS05135 0.74 -0.2
163,906 + EX31_RS05135 0.74 -2.4
163,907 - EX31_RS05135 0.74 +0.1
163,907 - EX31_RS05135 0.74 -0.4
163,907 - EX31_RS05135 0.74 -0.2
163,907 - EX31_RS05135 0.74 -0.0
163,907 - EX31_RS05135 0.74 +1.0
163,907 - EX31_RS05135 0.74 +0.6
163,907 - EX31_RS05135 0.74 +0.3
163,909 + EX31_RS05135 0.75 +0.2
163,909 + EX31_RS05135 0.75 +0.3
163,910 - EX31_RS05135 0.75 -1.1
163,910 - EX31_RS05135 0.75 +0.1
163,925 + EX31_RS05135 0.80 -0.2
163,926 - EX31_RS05135 0.80 +0.0
163,926 - EX31_RS05135 0.80 -0.5
163,926 - EX31_RS05135 0.80 -0.1
163,929 + EX31_RS05135 0.81 +0.1
163,929 + EX31_RS05135 0.81 -0.6
163,929 + EX31_RS05135 0.81 -0.6
164,004 + +0.6
164,004 + -0.7
164,031 + -0.7
164,076 - +0.2
164,076 - -2.0
164,117 + -0.1
164,117 + -1.1
164,117 + -0.3
164,117 + -0.1
164,117 + +0.5
164,118 - +0.7
164,118 - +0.8
164,118 - +0.5
164,118 - +0.1
164,118 - +0.5
164,118 - +0.1
164,121 + -0.1
164,121 + -0.8
164,121 + -1.2
164,122 - -0.6
164,127 + +1.3
164,127 + -0.7
164,127 + -1.5
164,128 - -0.5
164,128 - +0.3
164,128 - +0.2
164,241 + +0.2
164,241 + -0.1
164,241 + +0.1
164,241 + +0.1
164,241 + -0.1
164,241 + +0.3
164,242 - -0.2
164,282 + EX31_RS05140 0.13 -0.8
164,282 + EX31_RS05140 0.13 +0.8
164,282 + EX31_RS05140 0.13 +0.0
164,283 - EX31_RS05140 0.13 -1.1
164,283 - EX31_RS05140 0.13 -0.4
164,283 - EX31_RS05140 0.13 -0.3
164,351 + EX31_RS05140 0.19 -0.4
164,351 + EX31_RS05140 0.19 +0.5
164,351 + EX31_RS05140 0.19 +0.4
164,592 + EX31_RS05140 0.39 +0.2
164,600 + EX31_RS05140 0.39 -0.1
164,606 + EX31_RS05140 0.40 -0.5
164,607 - EX31_RS05140 0.40 -0.0
164,607 - EX31_RS05140 0.40 +0.3
164,639 - EX31_RS05140 0.43 -0.1
164,680 + EX31_RS05140 0.46 -0.1
164,746 + EX31_RS05140 0.52 +0.7
164,746 + EX31_RS05140 0.52 -0.7
164,747 - EX31_RS05140 0.52 +0.7
164,777 + EX31_RS05140 0.54 -0.3
164,778 - EX31_RS05140 0.54 -0.2
164,861 - EX31_RS05140 0.61 +0.7

Or see this region's nucleotide sequence