Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS24825 and EX31_RS24830 overlap by 1 nucleotides EX31_RS24830 and EX31_RS24835 are separated by 97 nucleotides EX31_RS24835 and EX31_RS24840 are separated by 98 nucleotides
EX31_RS24825: EX31_RS24825 - WG repeat-containing protein, at 738,342 to 741,104
_RS24825
EX31_RS24830: EX31_RS24830 - WG repeat-containing protein, at 741,104 to 743,944
_RS24830
EX31_RS24835: EX31_RS24835 - ASCH domain-containing protein, at 744,042 to 744,434
_RS24835
EX31_RS24840: EX31_RS24840 - hypothetical protein, at 744,533 to 745,183
_RS24840
Position (kb) 741
742
743
744 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 740.129 kb on + strand, within EX31_RS24825 at 740.140 kb on - strand, within EX31_RS24825 at 740.159 kb on + strand, within EX31_RS24825 at 740.220 kb on + strand, within EX31_RS24825 at 740.220 kb on + strand, within EX31_RS24825 at 740.220 kb on + strand, within EX31_RS24825 at 740.367 kb on - strand, within EX31_RS24825 at 740.367 kb on - strand, within EX31_RS24825 at 740.402 kb on + strand, within EX31_RS24825 at 740.469 kb on + strand, within EX31_RS24825 at 740.469 kb on + strand, within EX31_RS24825 at 740.469 kb on + strand, within EX31_RS24825 at 740.470 kb on - strand, within EX31_RS24825 at 740.470 kb on - strand, within EX31_RS24825 at 740.501 kb on + strand, within EX31_RS24825 at 740.543 kb on + strand, within EX31_RS24825 at 740.630 kb on + strand, within EX31_RS24825 at 740.630 kb on + strand, within EX31_RS24825 at 740.630 kb on + strand, within EX31_RS24825 at 740.630 kb on + strand, within EX31_RS24825 at 740.630 kb on + strand, within EX31_RS24825 at 740.630 kb on + strand, within EX31_RS24825 at 740.631 kb on - strand, within EX31_RS24825 at 740.631 kb on - strand, within EX31_RS24825 at 740.649 kb on + strand, within EX31_RS24825 at 740.649 kb on + strand, within EX31_RS24825 at 740.649 kb on + strand, within EX31_RS24825 at 740.649 kb on + strand, within EX31_RS24825 at 740.649 kb on + strand, within EX31_RS24825 at 740.649 kb on + strand, within EX31_RS24825 at 740.649 kb on + strand, within EX31_RS24825 at 740.649 kb on + strand, within EX31_RS24825 at 740.650 kb on - strand, within EX31_RS24825 at 740.708 kb on + strand, within EX31_RS24825 at 740.741 kb on + strand, within EX31_RS24825 at 740.754 kb on + strand, within EX31_RS24825 at 740.856 kb on + strand at 740.856 kb on + strand at 740.874 kb on + strand at 740.874 kb on + strand at 740.874 kb on + strand at 740.874 kb on + strand at 740.874 kb on + strand at 740.874 kb on + strand at 740.874 kb on + strand at 740.874 kb on + strand at 740.874 kb on + strand at 740.875 kb on - strand at 740.882 kb on + strand at 740.882 kb on + strand at 740.882 kb on + strand at 740.882 kb on + strand at 740.883 kb on - strand at 741.023 kb on + strand at 741.047 kb on + strand at 741.057 kb on + strand at 741.057 kb on + strand at 741.057 kb on + strand at 741.098 kb on + strand at 741.098 kb on + strand at 741.098 kb on + strand at 741.099 kb on - strand at 741.099 kb on - strand at 741.099 kb on - strand at 741.102 kb on + strand at 741.102 kb on + strand at 741.103 kb on - strand at 741.103 kb on - strand at 741.103 kb on - strand at 741.157 kb on + strand at 741.166 kb on + strand at 741.166 kb on + strand at 741.166 kb on + strand at 741.166 kb on + strand at 741.166 kb on + strand at 741.166 kb on + strand at 741.167 kb on - strand at 741.167 kb on - strand at 741.167 kb on - strand at 741.265 kb on + strand at 741.265 kb on + strand at 741.266 kb on - strand at 741.266 kb on - strand at 741.266 kb on - strand at 741.291 kb on + strand at 741.291 kb on + strand at 741.291 kb on + strand at 741.295 kb on + strand at 741.295 kb on + strand at 741.296 kb on - strand at 741.397 kb on + strand, within EX31_RS24830 at 741.565 kb on + strand, within EX31_RS24830 at 741.578 kb on - strand, within EX31_RS24830 at 741.621 kb on + strand, within EX31_RS24830 at 741.815 kb on - strand, within EX31_RS24830 at 741.837 kb on - strand, within EX31_RS24830 at 741.837 kb on - strand, within EX31_RS24830 at 741.906 kb on + strand, within EX31_RS24830 at 741.941 kb on + strand, within EX31_RS24830 at 741.941 kb on + strand, within EX31_RS24830 at 741.941 kb on + strand, within EX31_RS24830 at 741.941 kb on + strand, within EX31_RS24830 at 741.941 kb on + strand, within EX31_RS24830 at 741.941 kb on + strand, within EX31_RS24830 at 741.941 kb on + strand, within EX31_RS24830 at 741.942 kb on - strand, within EX31_RS24830 at 741.942 kb on - strand, within EX31_RS24830 at 741.942 kb on - strand, within EX31_RS24830 at 741.942 kb on - strand, within EX31_RS24830 at 742.005 kb on + strand, within EX31_RS24830 at 742.005 kb on + strand, within EX31_RS24830 at 742.005 kb on + strand, within EX31_RS24830 at 742.005 kb on + strand, within EX31_RS24830 at 742.005 kb on + strand, within EX31_RS24830 at 742.079 kb on + strand, within EX31_RS24830 at 742.079 kb on + strand, within EX31_RS24830 at 742.079 kb on + strand, within EX31_RS24830 at 742.080 kb on - strand, within EX31_RS24830 at 742.080 kb on - strand, within EX31_RS24830 at 742.111 kb on + strand, within EX31_RS24830 at 742.111 kb on + strand, within EX31_RS24830 at 742.111 kb on + strand, within EX31_RS24830 at 742.111 kb on + strand, within EX31_RS24830 at 742.112 kb on - strand, within EX31_RS24830 at 742.112 kb on - strand, within EX31_RS24830 at 742.112 kb on - strand, within EX31_RS24830 at 742.112 kb on - strand, within EX31_RS24830 at 742.118 kb on + strand, within EX31_RS24830 at 742.118 kb on + strand, within EX31_RS24830 at 742.118 kb on + strand, within EX31_RS24830 at 742.118 kb on + strand, within EX31_RS24830 at 742.118 kb on + strand, within EX31_RS24830 at 742.118 kb on + strand, within EX31_RS24830 at 742.118 kb on + strand, within EX31_RS24830 at 742.119 kb on - strand, within EX31_RS24830 at 742.119 kb on - strand, within EX31_RS24830 at 742.119 kb on - strand, within EX31_RS24830 at 742.122 kb on + strand, within EX31_RS24830 at 742.123 kb on - strand, within EX31_RS24830 at 742.132 kb on + strand, within EX31_RS24830 at 742.132 kb on + strand, within EX31_RS24830 at 742.132 kb on + strand, within EX31_RS24830 at 742.132 kb on + strand, within EX31_RS24830 at 742.133 kb on - strand, within EX31_RS24830 at 742.190 kb on + strand, within EX31_RS24830 at 742.191 kb on - strand, within EX31_RS24830 at 742.346 kb on + strand, within EX31_RS24830 at 742.400 kb on - strand, within EX31_RS24830 at 742.400 kb on - strand, within EX31_RS24830 at 742.436 kb on + strand, within EX31_RS24830 at 742.436 kb on + strand, within EX31_RS24830 at 742.436 kb on + strand, within EX31_RS24830 at 742.437 kb on - strand, within EX31_RS24830 at 742.453 kb on + strand, within EX31_RS24830 at 742.454 kb on - strand, within EX31_RS24830 at 742.594 kb on + strand, within EX31_RS24830 at 742.606 kb on + strand, within EX31_RS24830 at 742.606 kb on + strand, within EX31_RS24830 at 742.681 kb on + strand, within EX31_RS24830 at 742.681 kb on + strand, within EX31_RS24830 at 742.682 kb on - strand, within EX31_RS24830 at 742.715 kb on + strand, within EX31_RS24830 at 742.753 kb on + strand, within EX31_RS24830 at 742.760 kb on + strand, within EX31_RS24830 at 742.760 kb on + strand, within EX31_RS24830 at 742.776 kb on + strand, within EX31_RS24830 at 742.776 kb on + strand, within EX31_RS24830 at 742.776 kb on + strand, within EX31_RS24830 at 742.910 kb on + strand, within EX31_RS24830 at 742.997 kb on + strand, within EX31_RS24830 at 742.997 kb on + strand, within EX31_RS24830 at 742.997 kb on + strand, within EX31_RS24830 at 742.997 kb on + strand, within EX31_RS24830 at 742.998 kb on - strand, within EX31_RS24830 at 742.998 kb on - strand, within EX31_RS24830 at 743.018 kb on - strand, within EX31_RS24830 at 743.393 kb on + strand, within EX31_RS24830 at 743.411 kb on - strand, within EX31_RS24830 at 743.432 kb on - strand, within EX31_RS24830 at 743.500 kb on + strand, within EX31_RS24830 at 743.501 kb on - strand, within EX31_RS24830 at 743.501 kb on - strand, within EX31_RS24830 at 743.538 kb on + strand, within EX31_RS24830 at 743.539 kb on - strand, within EX31_RS24830 at 743.589 kb on + strand, within EX31_RS24830 at 743.589 kb on + strand, within EX31_RS24830 at 743.589 kb on + strand, within EX31_RS24830 at 743.657 kb on + strand, within EX31_RS24830 at 743.668 kb on - strand at 743.710 kb on + strand at 743.710 kb on + strand at 743.711 kb on - strand at 743.714 kb on + strand at 743.730 kb on + strand at 743.730 kb on + strand at 743.730 kb on + strand at 743.730 kb on + strand at 743.730 kb on + strand at 743.731 kb on - strand at 743.830 kb on + strand at 743.883 kb on + strand at 743.884 kb on - strand at 743.886 kb on - strand at 744.008 kb on + strand at 744.009 kb on - strand at 744.009 kb on - strand at 744.019 kb on + strand at 744.062 kb on + strand at 744.062 kb on + strand at 744.063 kb on - strand at 744.063 kb on - strand at 744.227 kb on + strand, within EX31_RS24835 at 744.390 kb on - strand, within EX31_RS24835 at 744.400 kb on + strand at 744.400 kb on + strand at 744.469 kb on + strand at 744.470 kb on - strand at 744.487 kb on + strand at 744.488 kb on - strand at 744.488 kb on - strand at 744.488 kb on - strand at 744.488 kb on - strand at 744.488 kb on - strand at 744.489 kb on + strand at 744.489 kb on + strand at 744.489 kb on + strand at 744.489 kb on + strand at 744.490 kb on - strand at 744.490 kb on - strand at 744.527 kb on + strand at 744.582 kb on + strand at 744.583 kb on - strand at 744.588 kb on - strand at 744.663 kb on + strand, within EX31_RS24840 at 744.663 kb on + strand, within EX31_RS24840 at 744.784 kb on + strand, within EX31_RS24840 at 744.785 kb on - strand, within EX31_RS24840 at 744.810 kb on - strand, within EX31_RS24840 at 744.818 kb on + strand, within EX31_RS24840 at 744.818 kb on + strand, within EX31_RS24840 at 744.819 kb on - strand, within EX31_RS24840 at 744.841 kb on + strand, within EX31_RS24840 at 744.872 kb on + strand, within EX31_RS24840 at 744.872 kb on + strand, within EX31_RS24840 at 744.872 kb on + strand, within EX31_RS24840 at 744.907 kb on + strand, within EX31_RS24840
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 740,129 + EX31_RS24825 0.65 -1.1 740,140 - EX31_RS24825 0.65 -0.6 740,159 + EX31_RS24825 0.66 -0.2 740,220 + EX31_RS24825 0.68 -0.6 740,220 + EX31_RS24825 0.68 -0.2 740,220 + EX31_RS24825 0.68 +0.7 740,367 - EX31_RS24825 0.73 +0.8 740,367 - EX31_RS24825 0.73 -1.1 740,402 + EX31_RS24825 0.75 +0.5 740,469 + EX31_RS24825 0.77 +0.6 740,469 + EX31_RS24825 0.77 +0.7 740,469 + EX31_RS24825 0.77 +1.0 740,470 - EX31_RS24825 0.77 +0.7 740,470 - EX31_RS24825 0.77 -1.9 740,501 + EX31_RS24825 0.78 +1.0 740,543 + EX31_RS24825 0.80 +1.3 740,630 + EX31_RS24825 0.83 -0.8 740,630 + EX31_RS24825 0.83 +0.9 740,630 + EX31_RS24825 0.83 -0.4 740,630 + EX31_RS24825 0.83 +0.2 740,630 + EX31_RS24825 0.83 -0.7 740,630 + EX31_RS24825 0.83 -0.4 740,631 - EX31_RS24825 0.83 -0.4 740,631 - EX31_RS24825 0.83 -0.4 740,649 + EX31_RS24825 0.83 -0.2 740,649 + EX31_RS24825 0.83 -0.1 740,649 + EX31_RS24825 0.83 -0.8 740,649 + EX31_RS24825 0.83 +2.3 740,649 + EX31_RS24825 0.83 +1.0 740,649 + EX31_RS24825 0.83 +0.8 740,649 + EX31_RS24825 0.83 +0.4 740,649 + EX31_RS24825 0.83 -0.9 740,650 - EX31_RS24825 0.84 +1.8 740,708 + EX31_RS24825 0.86 +1.3 740,741 + EX31_RS24825 0.87 +0.3 740,754 + EX31_RS24825 0.87 +0.4 740,856 + +1.3 740,856 + +0.1 740,874 + +0.0 740,874 + +0.4 740,874 + -0.2 740,874 + -0.3 740,874 + -1.0 740,874 + -0.1 740,874 + +1.1 740,874 + +1.3 740,874 + -0.6 740,875 - +0.5 740,882 + -2.4 740,882 + -0.3 740,882 + +0.2 740,882 + +0.7 740,883 - +0.1 741,023 + +1.0 741,047 + +0.6 741,057 + -0.7 741,057 + -0.0 741,057 + -0.2 741,098 + -0.8 741,098 + +0.1 741,098 + +0.5 741,099 - -1.2 741,099 - -3.2 741,099 - +0.2 741,102 + +0.3 741,102 + -0.5 741,103 - -2.7 741,103 - -0.2 741,103 - +0.6 741,157 + -0.8 741,166 + -0.1 741,166 + -2.3 741,166 + -0.5 741,166 + -3.3 741,166 + +0.0 741,166 + +0.0 741,167 - -1.2 741,167 - +0.1 741,167 - +1.3 741,265 + -1.4 741,265 + -2.2 741,266 - +0.8 741,266 - +0.9 741,266 - -0.2 741,291 + +0.7 741,291 + -0.2 741,291 + -2.8 741,295 + +0.2 741,295 + +0.2 741,296 - +1.2 741,397 + EX31_RS24830 0.10 -0.1 741,565 + EX31_RS24830 0.16 +0.6 741,578 - EX31_RS24830 0.17 +1.2 741,621 + EX31_RS24830 0.18 -2.9 741,815 - EX31_RS24830 0.25 -1.3 741,837 - EX31_RS24830 0.26 +0.1 741,837 - EX31_RS24830 0.26 -0.0 741,906 + EX31_RS24830 0.28 -0.4 741,941 + EX31_RS24830 0.29 -1.0 741,941 + EX31_RS24830 0.29 -1.0 741,941 + EX31_RS24830 0.29 -0.1 741,941 + EX31_RS24830 0.29 -1.7 741,941 + EX31_RS24830 0.29 -0.4 741,941 + EX31_RS24830 0.29 +1.3 741,941 + EX31_RS24830 0.29 -0.1 741,942 - EX31_RS24830 0.29 -1.7 741,942 - EX31_RS24830 0.29 -0.8 741,942 - EX31_RS24830 0.29 +0.2 741,942 - EX31_RS24830 0.29 +1.9 742,005 + EX31_RS24830 0.32 -0.6 742,005 + EX31_RS24830 0.32 -0.6 742,005 + EX31_RS24830 0.32 -0.7 742,005 + EX31_RS24830 0.32 -0.6 742,005 + EX31_RS24830 0.32 +0.3 742,079 + EX31_RS24830 0.34 -1.4 742,079 + EX31_RS24830 0.34 +0.1 742,079 + EX31_RS24830 0.34 +0.6 742,080 - EX31_RS24830 0.34 +0.2 742,080 - EX31_RS24830 0.34 -0.2 742,111 + EX31_RS24830 0.35 -0.5 742,111 + EX31_RS24830 0.35 +0.9 742,111 + EX31_RS24830 0.35 -1.9 742,111 + EX31_RS24830 0.35 -1.3 742,112 - EX31_RS24830 0.35 +0.1 742,112 - EX31_RS24830 0.35 +0.3 742,112 - EX31_RS24830 0.35 -0.2 742,112 - EX31_RS24830 0.35 -0.6 742,118 + EX31_RS24830 0.36 +1.5 742,118 + EX31_RS24830 0.36 +0.7 742,118 + EX31_RS24830 0.36 +0.5 742,118 + EX31_RS24830 0.36 -0.7 742,118 + EX31_RS24830 0.36 -0.2 742,118 + EX31_RS24830 0.36 +1.7 742,118 + EX31_RS24830 0.36 +0.2 742,119 - EX31_RS24830 0.36 +0.7 742,119 - EX31_RS24830 0.36 +0.1 742,119 - EX31_RS24830 0.36 -2.4 742,122 + EX31_RS24830 0.36 -1.0 742,123 - EX31_RS24830 0.36 -1.5 742,132 + EX31_RS24830 0.36 +0.3 742,132 + EX31_RS24830 0.36 +0.5 742,132 + EX31_RS24830 0.36 +0.8 742,132 + EX31_RS24830 0.36 -2.8 742,133 - EX31_RS24830 0.36 -1.4 742,190 + EX31_RS24830 0.38 +1.2 742,191 - EX31_RS24830 0.38 +0.1 742,346 + EX31_RS24830 0.44 +1.0 742,400 - EX31_RS24830 0.46 -0.1 742,400 - EX31_RS24830 0.46 +0.8 742,436 + EX31_RS24830 0.47 +0.6 742,436 + EX31_RS24830 0.47 +0.1 742,436 + EX31_RS24830 0.47 -0.7 742,437 - EX31_RS24830 0.47 +1.1 742,453 + EX31_RS24830 0.47 +1.2 742,454 - EX31_RS24830 0.48 +0.4 742,594 + EX31_RS24830 0.52 -1.1 742,606 + EX31_RS24830 0.53 +0.3 742,606 + EX31_RS24830 0.53 -1.2 742,681 + EX31_RS24830 0.56 -1.0 742,681 + EX31_RS24830 0.56 -0.8 742,682 - EX31_RS24830 0.56 -1.5 742,715 + EX31_RS24830 0.57 -0.2 742,753 + EX31_RS24830 0.58 -0.0 742,760 + EX31_RS24830 0.58 +0.2 742,760 + EX31_RS24830 0.58 -0.6 742,776 + EX31_RS24830 0.59 +0.1 742,776 + EX31_RS24830 0.59 +0.0 742,776 + EX31_RS24830 0.59 -1.3 742,910 + EX31_RS24830 0.64 -0.7 742,997 + EX31_RS24830 0.67 -2.2 742,997 + EX31_RS24830 0.67 +0.6 742,997 + EX31_RS24830 0.67 -0.2 742,997 + EX31_RS24830 0.67 -0.5 742,998 - EX31_RS24830 0.67 +0.7 742,998 - EX31_RS24830 0.67 -0.7 743,018 - EX31_RS24830 0.67 -1.0 743,393 + EX31_RS24830 0.81 -0.3 743,411 - EX31_RS24830 0.81 +0.9 743,432 - EX31_RS24830 0.82 +0.1 743,500 + EX31_RS24830 0.84 +0.7 743,501 - EX31_RS24830 0.84 -0.3 743,501 - EX31_RS24830 0.84 +0.7 743,538 + EX31_RS24830 0.86 -1.7 743,539 - EX31_RS24830 0.86 -2.8 743,589 + EX31_RS24830 0.87 -0.9 743,589 + EX31_RS24830 0.87 +0.5 743,589 + EX31_RS24830 0.87 -0.9 743,657 + EX31_RS24830 0.90 +1.0 743,668 - +0.3 743,710 + -2.0 743,710 + +0.3 743,711 - +2.5 743,714 + +0.7 743,730 + -0.7 743,730 + -0.6 743,730 + +1.0 743,730 + -0.5 743,730 + -0.4 743,731 - -2.2 743,830 + -0.4 743,883 + -0.2 743,884 - -0.3 743,886 - +0.7 744,008 + +1.8 744,009 - -2.1 744,009 - -1.5 744,019 + +0.5 744,062 + +0.2 744,062 + +0.9 744,063 - +0.7 744,063 - -0.3 744,227 + EX31_RS24835 0.47 -0.3 744,390 - EX31_RS24835 0.89 -2.2 744,400 + -0.2 744,400 + -0.7 744,469 + +0.8 744,470 - +0.6 744,487 + +1.4 744,488 - +1.2 744,488 - -0.2 744,488 - +0.5 744,488 - +0.5 744,488 - +1.0 744,489 + -0.7 744,489 + +0.9 744,489 + +0.3 744,489 + -0.8 744,490 - -0.6 744,490 - -0.4 744,527 + -0.1 744,582 + +0.4 744,583 - -0.7 744,588 - +0.8 744,663 + EX31_RS24840 0.20 -0.1 744,663 + EX31_RS24840 0.20 +0.3 744,784 + EX31_RS24840 0.39 +0.3 744,785 - EX31_RS24840 0.39 +0.6 744,810 - EX31_RS24840 0.43 -2.7 744,818 + EX31_RS24840 0.44 +2.8 744,818 + EX31_RS24840 0.44 +0.4 744,819 - EX31_RS24840 0.44 -2.7 744,841 + EX31_RS24840 0.47 -0.1 744,872 + EX31_RS24840 0.52 -0.7 744,872 + EX31_RS24840 0.52 +0.4 744,872 + EX31_RS24840 0.52 -1.1 744,907 + EX31_RS24840 0.57 +0.5
Or see this region's nucleotide sequence