Strain Fitness in Rahnella sp. WP5 around EX31_RS24340

Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS24335 and EX31_RS24340 are separated by 67 nucleotidesEX31_RS24340 and EX31_RS24345 are separated by 64 nucleotides EX31_RS24335: EX31_RS24335 - rhodanese-related sulfurtransferase, at 632,735 to 633,790 _RS24335 EX31_RS24340: EX31_RS24340 - YceI family protein, at 633,858 to 634,433 _RS24340 EX31_RS24345: EX31_RS24345 - cytochrome b, at 634,498 to 635,043 _RS24345 Position (kb) 633 634 635Strain fitness (log2 ratio) -2 -1 0 1 2at 632.895 kb on + strand, within EX31_RS24335at 632.895 kb on + strand, within EX31_RS24335at 632.909 kb on + strand, within EX31_RS24335at 632.909 kb on + strand, within EX31_RS24335at 632.910 kb on - strand, within EX31_RS24335at 633.043 kb on + strand, within EX31_RS24335at 633.043 kb on + strand, within EX31_RS24335at 633.043 kb on + strand, within EX31_RS24335at 633.043 kb on + strand, within EX31_RS24335at 633.165 kb on + strand, within EX31_RS24335at 633.165 kb on + strand, within EX31_RS24335at 633.165 kb on + strand, within EX31_RS24335at 633.209 kb on + strand, within EX31_RS24335at 633.209 kb on + strand, within EX31_RS24335at 633.235 kb on + strand, within EX31_RS24335at 633.307 kb on + strand, within EX31_RS24335at 633.308 kb on - strand, within EX31_RS24335at 633.329 kb on + strand, within EX31_RS24335at 633.329 kb on + strand, within EX31_RS24335at 633.329 kb on + strand, within EX31_RS24335at 633.329 kb on + strand, within EX31_RS24335at 633.329 kb on + strand, within EX31_RS24335at 633.329 kb on + strand, within EX31_RS24335at 633.329 kb on + strand, within EX31_RS24335at 633.329 kb on + strand, within EX31_RS24335at 633.330 kb on - strand, within EX31_RS24335at 633.368 kb on + strand, within EX31_RS24335at 633.368 kb on + strand, within EX31_RS24335at 633.368 kb on + strand, within EX31_RS24335at 633.368 kb on + strand, within EX31_RS24335at 633.368 kb on + strand, within EX31_RS24335at 633.368 kb on + strand, within EX31_RS24335at 633.368 kb on + strand, within EX31_RS24335at 633.368 kb on + strand, within EX31_RS24335at 633.368 kb on + strand, within EX31_RS24335at 633.368 kb on + strand, within EX31_RS24335at 633.368 kb on + strand, within EX31_RS24335at 633.368 kb on + strand, within EX31_RS24335at 633.368 kb on + strand, within EX31_RS24335at 633.368 kb on + strand, within EX31_RS24335at 633.368 kb on + strand, within EX31_RS24335at 633.368 kb on + strand, within EX31_RS24335at 633.368 kb on + strand, within EX31_RS24335at 633.368 kb on + strand, within EX31_RS24335at 633.369 kb on - strand, within EX31_RS24335at 633.369 kb on - strand, within EX31_RS24335at 633.389 kb on - strand, within EX31_RS24335at 633.398 kb on + strand, within EX31_RS24335at 633.399 kb on - strand, within EX31_RS24335at 633.415 kb on + strand, within EX31_RS24335at 633.418 kb on + strand, within EX31_RS24335at 633.496 kb on + strand, within EX31_RS24335at 633.496 kb on + strand, within EX31_RS24335at 633.565 kb on + strand, within EX31_RS24335at 633.565 kb on + strand, within EX31_RS24335at 633.655 kb on + strand, within EX31_RS24335at 633.766 kb on + strandat 633.802 kb on - strandat 633.840 kb on + strandat 633.840 kb on + strandat 633.840 kb on + strandat 633.840 kb on + strandat 633.841 kb on - strandat 633.859 kb on + strandat 633.859 kb on + strandat 633.860 kb on - strandat 633.860 kb on - strandat 633.860 kb on - strandat 633.860 kb on - strandat 633.860 kb on - strandat 633.860 kb on - strandat 633.860 kb on - strandat 633.860 kb on - strandat 633.870 kb on + strandat 633.871 kb on - strandat 633.871 kb on - strandat 633.888 kb on - strandat 633.926 kb on + strand, within EX31_RS24340at 633.929 kb on + strand, within EX31_RS24340at 633.930 kb on - strand, within EX31_RS24340at 633.930 kb on - strand, within EX31_RS24340at 634.020 kb on - strand, within EX31_RS24340at 634.020 kb on - strand, within EX31_RS24340at 634.020 kb on - strand, within EX31_RS24340at 634.020 kb on - strand, within EX31_RS24340at 634.209 kb on - strand, within EX31_RS24340at 634.277 kb on + strand, within EX31_RS24340at 634.277 kb on + strand, within EX31_RS24340at 634.328 kb on + strand, within EX31_RS24340at 634.451 kb on + strandat 634.460 kb on + strandat 634.461 kb on - strandat 634.461 kb on - strandat 634.461 kb on - strandat 634.461 kb on - strandat 634.471 kb on + strandat 634.472 kb on - strandat 634.472 kb on - strandat 634.472 kb on - strandat 634.472 kb on - strandat 634.472 kb on - strandat 634.475 kb on + strandat 634.476 kb on - strandat 634.476 kb on - strandat 634.476 kb on - strandat 634.476 kb on - strandat 634.476 kb on - strandat 634.476 kb on - strandat 634.800 kb on - strand, within EX31_RS24345at 634.831 kb on - strand, within EX31_RS24345at 634.887 kb on + strand, within EX31_RS24345at 634.888 kb on - strand, within EX31_RS24345at 634.888 kb on - strand, within EX31_RS24345at 634.892 kb on - strand, within EX31_RS24345at 634.892 kb on - strand, within EX31_RS24345at 634.923 kb on - strand, within EX31_RS24345at 634.926 kb on - strand, within EX31_RS24345at 634.926 kb on - strand, within EX31_RS24345at 634.968 kb on - strand, within EX31_RS24345at 635.043 kb on + strandat 635.202 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
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632,895 + EX31_RS24335 0.15 -1.2
632,895 + EX31_RS24335 0.15 -2.6
632,909 + EX31_RS24335 0.16 -1.4
632,909 + EX31_RS24335 0.16 +1.6
632,910 - EX31_RS24335 0.17 -0.1
633,043 + EX31_RS24335 0.29 -0.2
633,043 + EX31_RS24335 0.29 +0.5
633,043 + EX31_RS24335 0.29 -0.1
633,043 + EX31_RS24335 0.29 +0.3
633,165 + EX31_RS24335 0.41 +0.9
633,165 + EX31_RS24335 0.41 +0.2
633,165 + EX31_RS24335 0.41 -0.7
633,209 + EX31_RS24335 0.45 -1.8
633,209 + EX31_RS24335 0.45 +0.2
633,235 + EX31_RS24335 0.47 +0.6
633,307 + EX31_RS24335 0.54 -0.2
633,308 - EX31_RS24335 0.54 -0.4
633,329 + EX31_RS24335 0.56 -0.2
633,329 + EX31_RS24335 0.56 -0.2
633,329 + EX31_RS24335 0.56 -1.6
633,329 + EX31_RS24335 0.56 +0.1
633,329 + EX31_RS24335 0.56 -0.3
633,329 + EX31_RS24335 0.56 +0.6
633,329 + EX31_RS24335 0.56 -0.6
633,329 + EX31_RS24335 0.56 +0.1
633,330 - EX31_RS24335 0.56 +1.5
633,368 + EX31_RS24335 0.60 -1.0
633,368 + EX31_RS24335 0.60 +0.3
633,368 + EX31_RS24335 0.60 +0.1
633,368 + EX31_RS24335 0.60 +0.0
633,368 + EX31_RS24335 0.60 +1.2
633,368 + EX31_RS24335 0.60 -0.0
633,368 + EX31_RS24335 0.60 -0.3
633,368 + EX31_RS24335 0.60 -0.4
633,368 + EX31_RS24335 0.60 +0.6
633,368 + EX31_RS24335 0.60 -1.2
633,368 + EX31_RS24335 0.60 -0.3
633,368 + EX31_RS24335 0.60 -0.3
633,368 + EX31_RS24335 0.60 +0.5
633,368 + EX31_RS24335 0.60 -1.4
633,368 + EX31_RS24335 0.60 +0.5
633,368 + EX31_RS24335 0.60 -0.1
633,368 + EX31_RS24335 0.60 +0.1
633,368 + EX31_RS24335 0.60 -1.3
633,369 - EX31_RS24335 0.60 +1.6
633,369 - EX31_RS24335 0.60 -1.2
633,389 - EX31_RS24335 0.62 +1.2
633,398 + EX31_RS24335 0.63 -0.5
633,399 - EX31_RS24335 0.63 +1.0
633,415 + EX31_RS24335 0.64 +1.3
633,418 + EX31_RS24335 0.65 +0.3
633,496 + EX31_RS24335 0.72 +0.2
633,496 + EX31_RS24335 0.72 +1.1
633,565 + EX31_RS24335 0.79 -0.8
633,565 + EX31_RS24335 0.79 -0.5
633,655 + EX31_RS24335 0.87 +0.8
633,766 + +0.4
633,802 - -1.4
633,840 + -0.2
633,840 + +1.3
633,840 + -0.3
633,840 + +1.0
633,841 - +0.5
633,859 + +0.2
633,859 + +0.5
633,860 - +0.7
633,860 - -0.5
633,860 - +0.2
633,860 - -0.7
633,860 - -0.4
633,860 - +0.0
633,860 - +0.4
633,860 - +0.3
633,870 + -0.2
633,871 - +0.4
633,871 - +0.5
633,888 - +1.8
633,926 + EX31_RS24340 0.12 +0.2
633,929 + EX31_RS24340 0.12 -0.0
633,930 - EX31_RS24340 0.12 -1.1
633,930 - EX31_RS24340 0.12 -1.4
634,020 - EX31_RS24340 0.28 -0.0
634,020 - EX31_RS24340 0.28 +0.3
634,020 - EX31_RS24340 0.28 -1.0
634,020 - EX31_RS24340 0.28 -0.4
634,209 - EX31_RS24340 0.61 -0.5
634,277 + EX31_RS24340 0.73 -0.3
634,277 + EX31_RS24340 0.73 -0.5
634,328 + EX31_RS24340 0.82 -0.3
634,451 + +0.3
634,460 + -0.1
634,461 - -0.4
634,461 - -1.8
634,461 - -0.1
634,461 - +1.5
634,471 + -0.2
634,472 - -0.1
634,472 - +0.4
634,472 - +0.6
634,472 - +1.1
634,472 - +0.4
634,475 + -0.5
634,476 - -0.1
634,476 - +1.4
634,476 - +0.1
634,476 - -1.9
634,476 - -0.0
634,476 - -1.4
634,800 - EX31_RS24345 0.55 +1.1
634,831 - EX31_RS24345 0.61 +0.8
634,887 + EX31_RS24345 0.71 +0.4
634,888 - EX31_RS24345 0.71 +1.2
634,888 - EX31_RS24345 0.71 +0.0
634,892 - EX31_RS24345 0.72 +0.1
634,892 - EX31_RS24345 0.72 +0.7
634,923 - EX31_RS24345 0.78 -0.3
634,926 - EX31_RS24345 0.78 +1.1
634,926 - EX31_RS24345 0.78 -1.2
634,968 - EX31_RS24345 0.86 -0.7
635,043 + +0.4
635,202 - +0.3

Or see this region's nucleotide sequence