Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS20790 and EX31_RS20795 are separated by 64 nucleotides EX31_RS20795 and EX31_RS20800 are separated by 493 nucleotides
EX31_RS20790: EX31_RS20790 - CatB-related O-acetyltransferase, at 807,086 to 807,868
_RS20790
EX31_RS20795: EX31_RS20795 - amidohydrolase, at 807,933 to 809,090
_RS20795
EX31_RS20800: EX31_RS20800 - PAS domain-containing protein, at 809,584 to 811,134
_RS20800
Position (kb) 807
808
809
810 Strain fitness (log2 ratio) -2
-1
0
1
2 at 806.970 kb on + strand at 807.015 kb on + strand at 807.015 kb on + strand at 807.028 kb on - strand at 807.028 kb on - strand at 807.028 kb on - strand at 807.032 kb on + strand at 807.032 kb on + strand at 807.049 kb on + strand at 807.049 kb on + strand at 807.049 kb on + strand at 807.049 kb on + strand at 807.050 kb on - strand at 807.050 kb on - strand at 807.050 kb on - strand at 807.051 kb on + strand at 807.052 kb on - strand at 807.054 kb on - strand at 807.092 kb on + strand at 807.100 kb on + strand at 807.138 kb on + strand at 807.183 kb on + strand, within EX31_RS20790 at 807.187 kb on + strand, within EX31_RS20790 at 807.202 kb on - strand, within EX31_RS20790 at 807.303 kb on - strand, within EX31_RS20790 at 807.320 kb on - strand, within EX31_RS20790 at 807.320 kb on - strand, within EX31_RS20790 at 807.320 kb on - strand, within EX31_RS20790 at 807.399 kb on + strand, within EX31_RS20790 at 807.409 kb on + strand, within EX31_RS20790 at 807.428 kb on + strand, within EX31_RS20790 at 807.428 kb on + strand, within EX31_RS20790 at 807.428 kb on + strand, within EX31_RS20790 at 807.428 kb on + strand, within EX31_RS20790 at 807.428 kb on + strand, within EX31_RS20790 at 807.428 kb on + strand, within EX31_RS20790 at 807.429 kb on - strand, within EX31_RS20790 at 807.429 kb on - strand, within EX31_RS20790 at 807.429 kb on - strand, within EX31_RS20790 at 807.481 kb on + strand, within EX31_RS20790 at 807.482 kb on - strand, within EX31_RS20790 at 807.497 kb on + strand, within EX31_RS20790 at 807.497 kb on + strand, within EX31_RS20790 at 807.497 kb on + strand, within EX31_RS20790 at 807.497 kb on + strand, within EX31_RS20790 at 807.497 kb on + strand, within EX31_RS20790 at 807.497 kb on + strand, within EX31_RS20790 at 807.497 kb on + strand, within EX31_RS20790 at 807.497 kb on + strand, within EX31_RS20790 at 807.498 kb on - strand, within EX31_RS20790 at 807.498 kb on - strand, within EX31_RS20790 at 807.498 kb on - strand, within EX31_RS20790 at 807.498 kb on - strand, within EX31_RS20790 at 807.498 kb on - strand, within EX31_RS20790 at 807.498 kb on - strand, within EX31_RS20790 at 807.498 kb on - strand, within EX31_RS20790 at 807.498 kb on - strand, within EX31_RS20790 at 807.498 kb on - strand, within EX31_RS20790 at 807.498 kb on - strand, within EX31_RS20790 at 807.498 kb on - strand, within EX31_RS20790 at 807.498 kb on - strand, within EX31_RS20790 at 807.499 kb on + strand, within EX31_RS20790 at 807.499 kb on + strand, within EX31_RS20790 at 807.499 kb on + strand, within EX31_RS20790 at 807.516 kb on + strand, within EX31_RS20790 at 807.516 kb on + strand, within EX31_RS20790 at 807.517 kb on - strand, within EX31_RS20790 at 807.517 kb on - strand, within EX31_RS20790 at 807.519 kb on + strand, within EX31_RS20790 at 807.519 kb on + strand, within EX31_RS20790 at 807.519 kb on + strand, within EX31_RS20790 at 807.519 kb on + strand, within EX31_RS20790 at 807.520 kb on - strand, within EX31_RS20790 at 807.552 kb on + strand, within EX31_RS20790 at 807.555 kb on + strand, within EX31_RS20790 at 807.589 kb on + strand, within EX31_RS20790 at 807.664 kb on + strand, within EX31_RS20790 at 807.665 kb on - strand, within EX31_RS20790 at 807.685 kb on + strand, within EX31_RS20790 at 807.685 kb on + strand, within EX31_RS20790 at 807.685 kb on + strand, within EX31_RS20790 at 807.685 kb on + strand, within EX31_RS20790 at 807.688 kb on + strand, within EX31_RS20790 at 807.688 kb on + strand, within EX31_RS20790 at 807.689 kb on - strand, within EX31_RS20790 at 807.689 kb on - strand, within EX31_RS20790 at 807.706 kb on + strand, within EX31_RS20790 at 807.706 kb on + strand, within EX31_RS20790 at 807.725 kb on - strand, within EX31_RS20790 at 807.764 kb on - strand, within EX31_RS20790 at 807.793 kb on + strand at 807.793 kb on + strand at 807.794 kb on - strand at 807.798 kb on + strand at 807.828 kb on - strand at 807.828 kb on - strand at 807.829 kb on + strand at 807.829 kb on + strand at 807.829 kb on + strand at 807.830 kb on - strand at 807.830 kb on - strand at 807.865 kb on - strand at 807.989 kb on + strand at 807.989 kb on + strand at 807.989 kb on + strand at 807.990 kb on - strand at 807.990 kb on - strand at 808.001 kb on + strand at 808.019 kb on + strand at 808.020 kb on - strand at 808.094 kb on - strand, within EX31_RS20795 at 808.127 kb on + strand, within EX31_RS20795 at 808.253 kb on - strand, within EX31_RS20795 at 808.276 kb on + strand, within EX31_RS20795 at 808.277 kb on - strand, within EX31_RS20795 at 808.277 kb on - strand, within EX31_RS20795 at 808.277 kb on - strand, within EX31_RS20795 at 808.277 kb on - strand, within EX31_RS20795 at 808.343 kb on + strand, within EX31_RS20795 at 808.343 kb on + strand, within EX31_RS20795 at 808.343 kb on + strand, within EX31_RS20795 at 808.343 kb on + strand, within EX31_RS20795 at 808.343 kb on + strand, within EX31_RS20795 at 808.343 kb on + strand, within EX31_RS20795 at 808.343 kb on + strand, within EX31_RS20795 at 808.343 kb on + strand, within EX31_RS20795 at 808.343 kb on + strand, within EX31_RS20795 at 808.343 kb on + strand, within EX31_RS20795 at 808.343 kb on + strand, within EX31_RS20795 at 808.343 kb on + strand, within EX31_RS20795 at 808.344 kb on - strand, within EX31_RS20795 at 808.344 kb on - strand, within EX31_RS20795 at 808.344 kb on - strand, within EX31_RS20795 at 808.344 kb on - strand, within EX31_RS20795 at 808.344 kb on - strand, within EX31_RS20795 at 808.344 kb on - strand, within EX31_RS20795 at 808.344 kb on - strand, within EX31_RS20795 at 808.344 kb on - strand, within EX31_RS20795 at 808.344 kb on - strand, within EX31_RS20795 at 808.344 kb on - strand, within EX31_RS20795 at 808.538 kb on + strand, within EX31_RS20795 at 808.539 kb on - strand, within EX31_RS20795 at 808.539 kb on - strand, within EX31_RS20795 at 808.540 kb on + strand, within EX31_RS20795 at 808.540 kb on + strand, within EX31_RS20795 at 808.540 kb on + strand, within EX31_RS20795 at 808.540 kb on + strand, within EX31_RS20795 at 808.540 kb on + strand, within EX31_RS20795 at 808.540 kb on + strand, within EX31_RS20795 at 808.540 kb on + strand, within EX31_RS20795 at 808.540 kb on + strand, within EX31_RS20795 at 808.540 kb on + strand, within EX31_RS20795 at 808.540 kb on + strand, within EX31_RS20795 at 808.540 kb on + strand, within EX31_RS20795 at 808.541 kb on - strand, within EX31_RS20795 at 808.541 kb on - strand, within EX31_RS20795 at 808.541 kb on - strand, within EX31_RS20795 at 808.541 kb on - strand, within EX31_RS20795 at 808.541 kb on - strand, within EX31_RS20795 at 808.541 kb on - strand, within EX31_RS20795 at 808.541 kb on - strand, within EX31_RS20795 at 808.541 kb on - strand, within EX31_RS20795 at 808.541 kb on - strand, within EX31_RS20795 at 808.541 kb on - strand, within EX31_RS20795 at 808.541 kb on - strand, within EX31_RS20795 at 808.541 kb on - strand, within EX31_RS20795 at 808.613 kb on + strand, within EX31_RS20795 at 808.614 kb on - strand, within EX31_RS20795 at 808.614 kb on - strand, within EX31_RS20795 at 808.614 kb on - strand, within EX31_RS20795 at 808.971 kb on + strand, within EX31_RS20795 at 808.972 kb on - strand, within EX31_RS20795 at 808.986 kb on + strand at 809.090 kb on + strand at 809.091 kb on - strand at 809.145 kb on + strand at 809.146 kb on - strand at 809.146 kb on - strand at 809.158 kb on + strand at 809.158 kb on + strand at 809.159 kb on - strand at 809.159 kb on - strand at 809.278 kb on + strand at 809.327 kb on - strand at 809.327 kb on - strand at 809.345 kb on + strand at 809.345 kb on + strand at 809.346 kb on - strand at 809.346 kb on - strand at 809.366 kb on - strand at 809.380 kb on - strand at 809.395 kb on - strand at 809.400 kb on - strand at 809.446 kb on - strand at 809.460 kb on - strand at 809.496 kb on - strand at 809.548 kb on + strand at 809.551 kb on + strand at 809.552 kb on - strand at 809.619 kb on + strand at 809.673 kb on + strand at 809.673 kb on + strand at 809.674 kb on - strand at 809.694 kb on + strand at 809.695 kb on - strand at 809.695 kb on - strand at 809.763 kb on + strand, within EX31_RS20800 at 809.796 kb on + strand, within EX31_RS20800 at 809.797 kb on - strand, within EX31_RS20800 at 809.797 kb on - strand, within EX31_RS20800 at 809.860 kb on + strand, within EX31_RS20800 at 809.890 kb on + strand, within EX31_RS20800 at 809.914 kb on + strand, within EX31_RS20800 at 809.932 kb on - strand, within EX31_RS20800 at 809.982 kb on - strand, within EX31_RS20800 at 810.053 kb on + strand, within EX31_RS20800 at 810.090 kb on - strand, within EX31_RS20800
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 806,970 + +0.9 807,015 + -0.2 807,015 + -0.8 807,028 - -0.6 807,028 - +1.0 807,028 - +0.2 807,032 + -1.1 807,032 + -0.7 807,049 + +0.5 807,049 + +0.8 807,049 + -0.8 807,049 + +0.3 807,050 - +0.6 807,050 - +0.3 807,050 - +0.1 807,051 + +0.8 807,052 - +0.2 807,054 - +0.0 807,092 + +0.9 807,100 + +0.1 807,138 + +1.2 807,183 + EX31_RS20790 0.12 -0.7 807,187 + EX31_RS20790 0.13 +0.0 807,202 - EX31_RS20790 0.15 -0.0 807,303 - EX31_RS20790 0.28 -0.2 807,320 - EX31_RS20790 0.30 -0.9 807,320 - EX31_RS20790 0.30 +1.4 807,320 - EX31_RS20790 0.30 +0.7 807,399 + EX31_RS20790 0.40 +0.8 807,409 + EX31_RS20790 0.41 -0.2 807,428 + EX31_RS20790 0.44 +0.3 807,428 + EX31_RS20790 0.44 -0.7 807,428 + EX31_RS20790 0.44 -0.6 807,428 + EX31_RS20790 0.44 +0.6 807,428 + EX31_RS20790 0.44 -0.1 807,428 + EX31_RS20790 0.44 +1.6 807,429 - EX31_RS20790 0.44 -0.4 807,429 - EX31_RS20790 0.44 -0.4 807,429 - EX31_RS20790 0.44 +2.0 807,481 + EX31_RS20790 0.50 -0.2 807,482 - EX31_RS20790 0.51 +0.0 807,497 + EX31_RS20790 0.52 +0.2 807,497 + EX31_RS20790 0.52 -0.1 807,497 + EX31_RS20790 0.52 +0.4 807,497 + EX31_RS20790 0.52 -0.5 807,497 + EX31_RS20790 0.52 +0.3 807,497 + EX31_RS20790 0.52 +0.1 807,497 + EX31_RS20790 0.52 +0.1 807,497 + EX31_RS20790 0.52 -0.4 807,498 - EX31_RS20790 0.53 +0.1 807,498 - EX31_RS20790 0.53 -0.7 807,498 - EX31_RS20790 0.53 -0.0 807,498 - EX31_RS20790 0.53 +0.5 807,498 - EX31_RS20790 0.53 +0.2 807,498 - EX31_RS20790 0.53 -0.2 807,498 - EX31_RS20790 0.53 -0.1 807,498 - EX31_RS20790 0.53 -0.3 807,498 - EX31_RS20790 0.53 +0.7 807,498 - EX31_RS20790 0.53 +0.9 807,498 - EX31_RS20790 0.53 -0.6 807,498 - EX31_RS20790 0.53 -1.3 807,499 + EX31_RS20790 0.53 -1.4 807,499 + EX31_RS20790 0.53 -0.7 807,499 + EX31_RS20790 0.53 +0.5 807,516 + EX31_RS20790 0.55 +1.2 807,516 + EX31_RS20790 0.55 +0.9 807,517 - EX31_RS20790 0.55 -2.0 807,517 - EX31_RS20790 0.55 -1.1 807,519 + EX31_RS20790 0.55 -0.5 807,519 + EX31_RS20790 0.55 +1.3 807,519 + EX31_RS20790 0.55 +0.2 807,519 + EX31_RS20790 0.55 +0.7 807,520 - EX31_RS20790 0.55 +0.5 807,552 + EX31_RS20790 0.60 +0.4 807,555 + EX31_RS20790 0.60 +0.6 807,589 + EX31_RS20790 0.64 +0.1 807,664 + EX31_RS20790 0.74 -0.4 807,665 - EX31_RS20790 0.74 -0.7 807,685 + EX31_RS20790 0.77 -0.5 807,685 + EX31_RS20790 0.77 +0.6 807,685 + EX31_RS20790 0.77 -0.1 807,685 + EX31_RS20790 0.77 -0.4 807,688 + EX31_RS20790 0.77 -1.9 807,688 + EX31_RS20790 0.77 +0.9 807,689 - EX31_RS20790 0.77 +0.3 807,689 - EX31_RS20790 0.77 +0.7 807,706 + EX31_RS20790 0.79 +0.0 807,706 + EX31_RS20790 0.79 +0.4 807,725 - EX31_RS20790 0.82 +0.0 807,764 - EX31_RS20790 0.87 +0.0 807,793 + +0.2 807,793 + +0.3 807,794 - +0.9 807,798 + +0.3 807,828 - +0.3 807,828 - -2.2 807,829 + +0.6 807,829 + -0.2 807,829 + -0.9 807,830 - -1.0 807,830 - +0.1 807,865 - +0.4 807,989 + -1.1 807,989 + +0.6 807,989 + +1.7 807,990 - +1.2 807,990 - -0.1 808,001 + +0.7 808,019 + +0.6 808,020 - -0.1 808,094 - EX31_RS20795 0.14 +0.6 808,127 + EX31_RS20795 0.17 +0.1 808,253 - EX31_RS20795 0.28 +0.5 808,276 + EX31_RS20795 0.30 +0.3 808,277 - EX31_RS20795 0.30 +0.2 808,277 - EX31_RS20795 0.30 -0.4 808,277 - EX31_RS20795 0.30 +1.1 808,277 - EX31_RS20795 0.30 -0.1 808,343 + EX31_RS20795 0.35 -1.4 808,343 + EX31_RS20795 0.35 +1.6 808,343 + EX31_RS20795 0.35 +0.7 808,343 + EX31_RS20795 0.35 -2.0 808,343 + EX31_RS20795 0.35 +0.6 808,343 + EX31_RS20795 0.35 -2.2 808,343 + EX31_RS20795 0.35 +1.3 808,343 + EX31_RS20795 0.35 -0.6 808,343 + EX31_RS20795 0.35 -2.7 808,343 + EX31_RS20795 0.35 -0.4 808,343 + EX31_RS20795 0.35 -0.4 808,343 + EX31_RS20795 0.35 +0.5 808,344 - EX31_RS20795 0.35 +0.9 808,344 - EX31_RS20795 0.35 -1.9 808,344 - EX31_RS20795 0.35 +1.5 808,344 - EX31_RS20795 0.35 +1.2 808,344 - EX31_RS20795 0.35 -0.1 808,344 - EX31_RS20795 0.35 -1.3 808,344 - EX31_RS20795 0.35 -0.9 808,344 - EX31_RS20795 0.35 +1.5 808,344 - EX31_RS20795 0.35 +0.8 808,344 - EX31_RS20795 0.35 +0.3 808,538 + EX31_RS20795 0.52 +0.9 808,539 - EX31_RS20795 0.52 +0.8 808,539 - EX31_RS20795 0.52 -0.3 808,540 + EX31_RS20795 0.52 +0.2 808,540 + EX31_RS20795 0.52 +0.4 808,540 + EX31_RS20795 0.52 -1.1 808,540 + EX31_RS20795 0.52 +0.9 808,540 + EX31_RS20795 0.52 +0.3 808,540 + EX31_RS20795 0.52 +1.5 808,540 + EX31_RS20795 0.52 +0.2 808,540 + EX31_RS20795 0.52 -0.9 808,540 + EX31_RS20795 0.52 -0.4 808,540 + EX31_RS20795 0.52 +1.7 808,540 + EX31_RS20795 0.52 +0.8 808,541 - EX31_RS20795 0.53 -0.5 808,541 - EX31_RS20795 0.53 +0.1 808,541 - EX31_RS20795 0.53 +0.3 808,541 - EX31_RS20795 0.53 +0.1 808,541 - EX31_RS20795 0.53 -0.6 808,541 - EX31_RS20795 0.53 -0.1 808,541 - EX31_RS20795 0.53 -0.1 808,541 - EX31_RS20795 0.53 -0.1 808,541 - EX31_RS20795 0.53 -0.1 808,541 - EX31_RS20795 0.53 +0.6 808,541 - EX31_RS20795 0.53 +0.6 808,541 - EX31_RS20795 0.53 -0.4 808,613 + EX31_RS20795 0.59 +0.9 808,614 - EX31_RS20795 0.59 +0.0 808,614 - EX31_RS20795 0.59 -1.2 808,614 - EX31_RS20795 0.59 +0.8 808,971 + EX31_RS20795 0.90 +0.4 808,972 - EX31_RS20795 0.90 -2.0 808,986 + +0.1 809,090 + +0.9 809,091 - +0.4 809,145 + +0.6 809,146 - +0.2 809,146 - +0.7 809,158 + -0.2 809,158 + +0.7 809,159 - +0.6 809,159 - -1.3 809,278 + +1.2 809,327 - +0.5 809,327 - +0.1 809,345 + +0.3 809,345 + -0.3 809,346 - -0.1 809,346 - +0.2 809,366 - +0.7 809,380 - -0.1 809,395 - +0.6 809,400 - -1.3 809,446 - +0.3 809,460 - +0.2 809,496 - -1.3 809,548 + -1.5 809,551 + -0.9 809,552 - +0.4 809,619 + +0.1 809,673 + +0.1 809,673 + -1.4 809,674 - +0.6 809,694 + -1.0 809,695 - +0.2 809,695 - -0.7 809,763 + EX31_RS20800 0.12 -1.2 809,796 + EX31_RS20800 0.14 +0.3 809,797 - EX31_RS20800 0.14 +0.2 809,797 - EX31_RS20800 0.14 +0.2 809,860 + EX31_RS20800 0.18 +0.4 809,890 + EX31_RS20800 0.20 -0.2 809,914 + EX31_RS20800 0.21 -0.3 809,932 - EX31_RS20800 0.22 -0.2 809,982 - EX31_RS20800 0.26 +0.4 810,053 + EX31_RS20800 0.30 +0.9 810,090 - EX31_RS20800 0.33 -0.5
Or see this region's nucleotide sequence