Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS18685 and EX31_RS18690 are separated by 250 nucleotides EX31_RS18690 and EX31_RS18695 are separated by 270 nucleotides
EX31_RS18685: EX31_RS18685 - galactose/glucose ABC transporter substrate-binding protein MglB, at 316,904 to 317,902
_RS18685
EX31_RS18690: EX31_RS18690 - HTH-type transcriptional regulator GalS, at 318,153 to 319,184
_RS18690
EX31_RS18695: EX31_RS18695 - DUF418 family protein, at 319,455 to 320,609
_RS18695
Position (kb) 318
319
320 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 317.174 kb on + strand, within EX31_RS18685 at 317.174 kb on + strand, within EX31_RS18685 at 317.174 kb on + strand, within EX31_RS18685 at 317.175 kb on - strand, within EX31_RS18685 at 317.175 kb on - strand, within EX31_RS18685 at 317.175 kb on - strand, within EX31_RS18685 at 317.175 kb on - strand, within EX31_RS18685 at 317.352 kb on + strand, within EX31_RS18685 at 317.352 kb on + strand, within EX31_RS18685 at 317.352 kb on + strand, within EX31_RS18685 at 317.353 kb on - strand, within EX31_RS18685 at 317.353 kb on - strand, within EX31_RS18685 at 317.353 kb on - strand, within EX31_RS18685 at 317.356 kb on + strand, within EX31_RS18685 at 317.356 kb on + strand, within EX31_RS18685 at 317.356 kb on + strand, within EX31_RS18685 at 317.356 kb on + strand, within EX31_RS18685 at 317.356 kb on + strand, within EX31_RS18685 at 317.356 kb on + strand, within EX31_RS18685 at 317.356 kb on + strand, within EX31_RS18685 at 317.357 kb on - strand, within EX31_RS18685 at 317.357 kb on - strand, within EX31_RS18685 at 317.357 kb on - strand, within EX31_RS18685 at 317.357 kb on - strand, within EX31_RS18685 at 317.357 kb on - strand, within EX31_RS18685 at 317.406 kb on + strand, within EX31_RS18685 at 317.407 kb on - strand, within EX31_RS18685 at 317.407 kb on - strand, within EX31_RS18685 at 317.462 kb on - strand, within EX31_RS18685 at 317.514 kb on + strand, within EX31_RS18685 at 317.515 kb on - strand, within EX31_RS18685 at 317.515 kb on - strand, within EX31_RS18685 at 317.515 kb on - strand, within EX31_RS18685 at 317.515 kb on - strand, within EX31_RS18685 at 317.515 kb on - strand, within EX31_RS18685 at 317.517 kb on + strand, within EX31_RS18685 at 317.518 kb on - strand, within EX31_RS18685 at 317.518 kb on - strand, within EX31_RS18685 at 317.518 kb on - strand, within EX31_RS18685 at 317.518 kb on - strand, within EX31_RS18685 at 317.566 kb on - strand, within EX31_RS18685 at 317.672 kb on - strand, within EX31_RS18685 at 317.799 kb on + strand, within EX31_RS18685 at 317.800 kb on - strand, within EX31_RS18685 at 317.800 kb on - strand, within EX31_RS18685 at 317.805 kb on + strand at 317.824 kb on + strand at 317.824 kb on + strand at 317.825 kb on - strand at 317.907 kb on - strand at 317.916 kb on + strand at 317.920 kb on + strand at 317.920 kb on + strand at 317.921 kb on - strand at 317.921 kb on - strand at 317.921 kb on - strand at 317.921 kb on - strand at 317.964 kb on + strand at 317.965 kb on - strand at 318.007 kb on + strand at 318.007 kb on + strand at 318.007 kb on + strand at 318.007 kb on + strand at 318.007 kb on + strand at 318.007 kb on + strand at 318.007 kb on + strand at 318.007 kb on + strand at 318.008 kb on - strand at 318.008 kb on - strand at 318.008 kb on - strand at 318.008 kb on - strand at 318.008 kb on - strand at 318.008 kb on - strand at 318.008 kb on - strand at 318.008 kb on - strand at 318.008 kb on - strand at 318.009 kb on + strand at 318.009 kb on + strand at 318.009 kb on + strand at 318.009 kb on + strand at 318.009 kb on + strand at 318.010 kb on - strand at 318.010 kb on - strand at 318.010 kb on - strand at 318.010 kb on - strand at 318.010 kb on - strand at 318.065 kb on - strand at 318.065 kb on - strand at 318.084 kb on + strand at 318.084 kb on + strand at 318.085 kb on - strand at 318.085 kb on - strand at 318.085 kb on - strand at 318.085 kb on - strand at 318.157 kb on + strand at 318.158 kb on - strand at 318.212 kb on + strand at 318.213 kb on - strand at 318.239 kb on + strand at 318.243 kb on + strand at 318.243 kb on + strand at 318.338 kb on - strand, within EX31_RS18690 at 318.446 kb on - strand, within EX31_RS18690 at 318.474 kb on - strand, within EX31_RS18690 at 318.474 kb on - strand, within EX31_RS18690 at 318.593 kb on - strand, within EX31_RS18690 at 318.644 kb on - strand, within EX31_RS18690 at 318.644 kb on - strand, within EX31_RS18690 at 318.644 kb on - strand, within EX31_RS18690 at 318.644 kb on - strand, within EX31_RS18690 at 318.711 kb on - strand, within EX31_RS18690 at 318.783 kb on - strand, within EX31_RS18690 at 318.869 kb on - strand, within EX31_RS18690 at 318.869 kb on - strand, within EX31_RS18690 at 318.888 kb on - strand, within EX31_RS18690 at 318.888 kb on - strand, within EX31_RS18690 at 318.888 kb on - strand, within EX31_RS18690 at 318.888 kb on - strand, within EX31_RS18690 at 318.892 kb on + strand, within EX31_RS18690 at 318.893 kb on - strand, within EX31_RS18690 at 318.893 kb on - strand, within EX31_RS18690 at 318.903 kb on + strand, within EX31_RS18690 at 318.913 kb on + strand, within EX31_RS18690 at 319.106 kb on + strand at 319.215 kb on - strand at 319.248 kb on + strand at 319.307 kb on + strand at 319.307 kb on + strand at 319.307 kb on + strand at 319.308 kb on - strand at 319.339 kb on + strand at 319.339 kb on + strand at 319.402 kb on + strand at 319.402 kb on + strand at 319.403 kb on - strand at 319.431 kb on + strand at 319.432 kb on - strand at 319.439 kb on + strand at 319.439 kb on + strand at 319.439 kb on + strand at 319.439 kb on + strand at 319.439 kb on + strand at 319.439 kb on + strand at 319.440 kb on - strand at 319.440 kb on - strand at 319.440 kb on - strand at 319.440 kb on - strand at 319.440 kb on - strand at 319.440 kb on - strand at 319.440 kb on - strand at 319.440 kb on - strand at 319.440 kb on - strand at 319.440 kb on - strand at 319.441 kb on + strand at 319.441 kb on + strand at 319.441 kb on + strand at 319.441 kb on + strand at 319.441 kb on + strand at 319.441 kb on + strand at 319.441 kb on + strand at 319.441 kb on + strand at 319.442 kb on - strand at 319.442 kb on - strand at 319.442 kb on - strand at 319.442 kb on - strand at 319.442 kb on - strand at 319.442 kb on - strand at 319.442 kb on - strand at 319.442 kb on - strand at 319.442 kb on - strand at 319.467 kb on + strand at 319.621 kb on + strand, within EX31_RS18695 at 319.621 kb on + strand, within EX31_RS18695 at 319.622 kb on - strand, within EX31_RS18695 at 319.622 kb on - strand, within EX31_RS18695 at 319.666 kb on - strand, within EX31_RS18695 at 319.673 kb on - strand, within EX31_RS18695 at 319.688 kb on + strand, within EX31_RS18695 at 319.766 kb on - strand, within EX31_RS18695 at 319.766 kb on - strand, within EX31_RS18695 at 319.977 kb on - strand, within EX31_RS18695 at 319.977 kb on - strand, within EX31_RS18695 at 320.005 kb on + strand, within EX31_RS18695 at 320.151 kb on - strand, within EX31_RS18695 at 320.151 kb on - strand, within EX31_RS18695 at 320.154 kb on - strand, within EX31_RS18695 at 320.154 kb on - strand, within EX31_RS18695
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 317,174 + EX31_RS18685 0.27 -2.7 317,174 + EX31_RS18685 0.27 +0.1 317,174 + EX31_RS18685 0.27 -1.7 317,175 - EX31_RS18685 0.27 +1.2 317,175 - EX31_RS18685 0.27 +1.0 317,175 - EX31_RS18685 0.27 +0.3 317,175 - EX31_RS18685 0.27 +0.2 317,352 + EX31_RS18685 0.45 +2.0 317,352 + EX31_RS18685 0.45 -0.9 317,352 + EX31_RS18685 0.45 -0.1 317,353 - EX31_RS18685 0.45 -0.6 317,353 - EX31_RS18685 0.45 -0.3 317,353 - EX31_RS18685 0.45 +0.5 317,356 + EX31_RS18685 0.45 +0.3 317,356 + EX31_RS18685 0.45 -0.5 317,356 + EX31_RS18685 0.45 -0.4 317,356 + EX31_RS18685 0.45 +1.6 317,356 + EX31_RS18685 0.45 +0.3 317,356 + EX31_RS18685 0.45 +0.2 317,356 + EX31_RS18685 0.45 +0.3 317,357 - EX31_RS18685 0.45 -0.6 317,357 - EX31_RS18685 0.45 -2.4 317,357 - EX31_RS18685 0.45 +3.0 317,357 - EX31_RS18685 0.45 +0.8 317,357 - EX31_RS18685 0.45 +0.2 317,406 + EX31_RS18685 0.50 -0.4 317,407 - EX31_RS18685 0.50 +0.0 317,407 - EX31_RS18685 0.50 -0.3 317,462 - EX31_RS18685 0.56 -0.5 317,514 + EX31_RS18685 0.61 +0.1 317,515 - EX31_RS18685 0.61 -1.6 317,515 - EX31_RS18685 0.61 -0.3 317,515 - EX31_RS18685 0.61 -1.3 317,515 - EX31_RS18685 0.61 -1.8 317,515 - EX31_RS18685 0.61 -0.1 317,517 + EX31_RS18685 0.61 +0.2 317,518 - EX31_RS18685 0.61 -0.1 317,518 - EX31_RS18685 0.61 -1.3 317,518 - EX31_RS18685 0.61 +0.8 317,518 - EX31_RS18685 0.61 -1.6 317,566 - EX31_RS18685 0.66 -0.1 317,672 - EX31_RS18685 0.77 +0.7 317,799 + EX31_RS18685 0.90 -0.1 317,800 - EX31_RS18685 0.90 -0.9 317,800 - EX31_RS18685 0.90 +0.2 317,805 + -0.3 317,824 + -0.5 317,824 + +0.2 317,825 - +0.1 317,907 - +0.9 317,916 + +1.3 317,920 + -0.5 317,920 + -1.8 317,921 - -0.8 317,921 - +0.3 317,921 - +0.4 317,921 - +0.5 317,964 + +0.4 317,965 - +0.6 318,007 + +0.1 318,007 + -0.2 318,007 + -1.8 318,007 + -0.4 318,007 + -0.3 318,007 + -0.0 318,007 + -0.4 318,007 + -0.2 318,008 - +0.1 318,008 - -0.5 318,008 - +0.4 318,008 - -0.5 318,008 - +0.4 318,008 - -0.5 318,008 - -0.1 318,008 - +0.3 318,008 - +0.4 318,009 + +1.5 318,009 + +1.0 318,009 + -2.1 318,009 + -0.1 318,009 + +1.2 318,010 - +0.5 318,010 - +0.6 318,010 - -1.2 318,010 - -0.6 318,010 - +0.1 318,065 - -0.2 318,065 - +0.5 318,084 + -0.3 318,084 + +0.1 318,085 - -1.9 318,085 - -0.3 318,085 - -0.4 318,085 - +1.7 318,157 + +1.6 318,158 - -0.7 318,212 + -2.6 318,213 - +0.8 318,239 + +1.6 318,243 + +0.8 318,243 + +0.9 318,338 - EX31_RS18690 0.18 -1.0 318,446 - EX31_RS18690 0.28 -0.5 318,474 - EX31_RS18690 0.31 -1.0 318,474 - EX31_RS18690 0.31 +0.9 318,593 - EX31_RS18690 0.43 -0.2 318,644 - EX31_RS18690 0.48 +0.8 318,644 - EX31_RS18690 0.48 +1.0 318,644 - EX31_RS18690 0.48 +0.4 318,644 - EX31_RS18690 0.48 +1.4 318,711 - EX31_RS18690 0.54 +0.1 318,783 - EX31_RS18690 0.61 +2.6 318,869 - EX31_RS18690 0.69 -0.0 318,869 - EX31_RS18690 0.69 +1.1 318,888 - EX31_RS18690 0.71 -0.4 318,888 - EX31_RS18690 0.71 -1.0 318,888 - EX31_RS18690 0.71 +0.3 318,888 - EX31_RS18690 0.71 +0.2 318,892 + EX31_RS18690 0.72 +0.2 318,893 - EX31_RS18690 0.72 -1.0 318,893 - EX31_RS18690 0.72 -0.1 318,903 + EX31_RS18690 0.73 +1.7 318,913 + EX31_RS18690 0.74 -0.5 319,106 + -0.7 319,215 - +0.3 319,248 + -0.7 319,307 + +0.6 319,307 + -0.3 319,307 + +0.0 319,308 - -0.5 319,339 + -2.4 319,339 + +1.6 319,402 + +0.5 319,402 + -0.8 319,403 - +0.1 319,431 + -0.7 319,432 - -0.9 319,439 + +0.3 319,439 + -3.0 319,439 + -0.1 319,439 + +0.8 319,439 + -1.0 319,439 + +0.9 319,440 - +0.4 319,440 - +0.1 319,440 - -0.0 319,440 - +0.7 319,440 - -0.4 319,440 - +0.3 319,440 - +0.0 319,440 - +0.1 319,440 - -0.0 319,440 - -0.3 319,441 + +0.2 319,441 + +1.1 319,441 + +0.5 319,441 + -0.0 319,441 + +0.5 319,441 + -0.3 319,441 + +0.4 319,441 + -0.6 319,442 - +0.5 319,442 - -0.7 319,442 - +0.1 319,442 - -0.6 319,442 - -0.4 319,442 - -1.7 319,442 - -1.0 319,442 - -0.8 319,442 - -0.1 319,467 + -0.2 319,621 + EX31_RS18695 0.14 +0.9 319,621 + EX31_RS18695 0.14 +0.1 319,622 - EX31_RS18695 0.14 -0.3 319,622 - EX31_RS18695 0.14 -0.9 319,666 - EX31_RS18695 0.18 -1.6 319,673 - EX31_RS18695 0.19 -0.4 319,688 + EX31_RS18695 0.20 +2.6 319,766 - EX31_RS18695 0.27 -0.2 319,766 - EX31_RS18695 0.27 -0.1 319,977 - EX31_RS18695 0.45 +0.2 319,977 - EX31_RS18695 0.45 +0.7 320,005 + EX31_RS18695 0.48 +0.9 320,151 - EX31_RS18695 0.60 -0.1 320,151 - EX31_RS18695 0.60 -2.9 320,154 - EX31_RS18695 0.61 -2.3 320,154 - EX31_RS18695 0.61 +0.8
Or see this region's nucleotide sequence