Strain Fitness in Rahnella sp. WP5 around EX31_RS17085

Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
8,129	+		EX31_RS17080	0.53	-0.2
8,129	+		EX31_RS17080	0.53	+0.1
8,130	-		EX31_RS17080	0.53	-0.8
8,175	+		EX31_RS17080	0.55	-0.1
8,175	+		EX31_RS17080	0.55	+0.7
8,175	+		EX31_RS17080	0.55	+0.5
8,175	+		EX31_RS17080	0.55	+0.4
8,176	-		EX31_RS17080	0.55	+0.7
8,176	-		EX31_RS17080	0.55	-0.5
8,176	-		EX31_RS17080	0.55	+0.5
8,177	+		EX31_RS17080	0.55	+0.0
8,177	+		EX31_RS17080	0.55	+0.5
8,177	+		EX31_RS17080	0.55	-0.8
8,177	+		EX31_RS17080	0.55	-1.7
8,178	-		EX31_RS17080	0.55	-0.7
8,335	-		EX31_RS17080	0.63	-0.1
8,341	+		EX31_RS17080	0.64	+1.0
8,341	+		EX31_RS17080	0.64	-0.3
8,341	+		EX31_RS17080	0.64	+1.9
8,341	+		EX31_RS17080	0.64	-1.3
8,353	+		EX31_RS17080	0.64	-1.3
8,354	-		EX31_RS17080	0.64	-1.1
8,358	+		EX31_RS17080	0.65	-0.5
8,358	+		EX31_RS17080	0.65	+0.5
8,358	+		EX31_RS17080	0.65	-0.3
8,359	-		EX31_RS17080	0.65	+0.1
8,359	-		EX31_RS17080	0.65	+1.0
8,359	-		EX31_RS17080	0.65	+0.5
8,359	-		EX31_RS17080	0.65	+1.0
8,359	-		EX31_RS17080	0.65	-1.1
8,359	-		EX31_RS17080	0.65	-0.5
8,359	-		EX31_RS17080	0.65	+0.1
8,361	-		EX31_RS17080	0.65	+0.6
8,361	-		EX31_RS17080	0.65	-0.3
8,361	-		EX31_RS17080	0.65	-0.2
8,388	+		EX31_RS17080	0.66	-0.2
8,388	+		EX31_RS17080	0.66	-0.0
8,388	+		EX31_RS17080	0.66	+0.9
8,388	+		EX31_RS17080	0.66	+1.1
8,388	+		EX31_RS17080	0.66	-0.8
8,389	-		EX31_RS17080	0.66	-0.6
8,389	-		EX31_RS17080	0.66	+0.5
8,389	-		EX31_RS17080	0.66	+2.4
8,424	+		EX31_RS17080	0.68	+0.6
8,487	+		EX31_RS17080	0.71	+0.1
8,498	+		EX31_RS17080	0.72	+0.3
8,498	+		EX31_RS17080	0.72	-1.1
8,498	+		EX31_RS17080	0.72	+0.5
8,499	-		EX31_RS17080	0.72	-0.4
8,499	-		EX31_RS17080	0.72	-0.3
8,499	-		EX31_RS17080	0.72	-0.1
8,539	-		EX31_RS17080	0.74	-1.1
8,539	-		EX31_RS17080	0.74	-0.2
8,539	-		EX31_RS17080	0.74	-0.4
8,539	-		EX31_RS17080	0.74	-0.4
8,549	+		EX31_RS17080	0.75	-0.1
8,550	-		EX31_RS17080	0.75	+0.8
8,589	+		EX31_RS17080	0.77	+0.6
8,590	-		EX31_RS17080	0.77	+0.8
8,590	-		EX31_RS17080	0.77	+0.8
8,590	-		EX31_RS17080	0.77	-0.7
8,590	-		EX31_RS17080	0.77	-1.6
8,607	-		EX31_RS17080	0.78	-0.3
8,619	+		EX31_RS17080	0.78	+0.9
8,619	+		EX31_RS17080	0.78	-2.0
8,620	-		EX31_RS17080	0.78	-1.0
8,620	-		EX31_RS17080	0.78	-0.7
8,620	-		EX31_RS17080	0.78	+0.5
8,820	+		EX31_RS17080	0.89	+0.9
8,821	-		EX31_RS17080	0.89	+0.0
8,821	-		EX31_RS17080	0.89	+0.5
8,821	-		EX31_RS17080	0.89	+0.4
8,821	-		EX31_RS17080	0.89	-1.0
8,826	+		EX31_RS17080	0.89	+0.2
8,826	+		EX31_RS17080	0.89	+0.5
8,827	-		EX31_RS17080	0.89	-0.1
8,849	-				-0.4
8,859	-				+0.7
8,859	-				-0.3
8,877	+				-1.1
8,877	+				-0.1
8,877	+				+0.4
8,877	+				+1.3
8,877	+				-0.7
8,877	+				+0.4
8,878	-				+1.4
8,878	-				-0.5
8,878	-				-0.8
8,878	-				-0.6
8,878	-				+1.6
8,878	-				-0.2
8,878	-				-0.3
8,878	-				+0.4
8,878	-				+0.7
8,906	+				-0.8
8,922	+				+0.8
8,988	+				+0.8
8,989	-				+0.4
8,989	-				-0.8
8,989	-				+1.1
9,006	+				-1.1
9,006	+				-1.1
9,007	-				+1.1
9,007	-				+0.7
9,007	-				-0.5
9,039	+				-0.4
9,039	+				+2.1
9,039	+				+0.4
9,039	+				+0.1
9,040	-				-1.3
9,040	-				-0.3
9,040	-				+0.5
9,040	-				-0.0
9,040	-				-0.5
9,040	-				-0.4
9,040	-				+1.3
9,057	-				+0.7
9,057	-				+0.5
9,060	+				-1.0
9,061	-				-1.9
9,067	-				-0.2
9,139	+				+0.3
9,140	-				-0.5
9,140	-				+1.1
9,213	+		EX31_RS17085	0.32	+0.0
9,213	+		EX31_RS17085	0.32	+1.0
9,241	-		EX31_RS17085	0.42	-0.4
9,241	-		EX31_RS17085	0.42	+0.3
9,241	-		EX31_RS17085	0.42	-1.1
9,272	-		EX31_RS17085	0.54	-2.2
9,272	-		EX31_RS17085	0.54	+0.6
9,295	-		EX31_RS17085	0.62	-0.0
9,295	-		EX31_RS17085	0.62	-0.8
9,295	-		EX31_RS17085	0.62	+0.7
9,298	+		EX31_RS17085	0.63	-0.5
9,299	-		EX31_RS17085	0.63	-0.8
9,299	-		EX31_RS17085	0.63	-1.0
9,299	-		EX31_RS17085	0.63	+0.1
9,299	-		EX31_RS17085	0.63	+0.0
9,299	-		EX31_RS17085	0.63	-0.7
9,299	-		EX31_RS17085	0.63	+0.1
9,370	+		EX31_RS17085	0.90	+0.3
9,444	+				+1.9
9,460	+				+1.5
9,460	+				-1.9
9,461	-				+0.2
9,476	+				+0.5
9,476	+				-0.1
9,476	+				-0.1
9,476	+				-0.3
9,476	+				+0.1
9,476	+				+0.1
9,477	-				+0.9
9,477	-				-0.3
9,477	-				-0.0
9,477	-				-0.4
9,525	-				+0.3
9,527	+				-0.7
9,528	-				-0.3
9,538	+				-0.8
9,560	-				-0.9
9,560	-				-1.8
9,620	+				+0.3
9,620	+				+0.1
9,620	+				+0.1
9,621	-				+0.5
9,621	-				+0.7
9,691	+		EX31_RS17090	0.15	-0.5
9,691	+		EX31_RS17090	0.15	+0.2
9,692	-		EX31_RS17090	0.15	+0.2
9,692	-		EX31_RS17090	0.15	-0.4
9,712	+		EX31_RS17090	0.16	+1.0
9,712	+		EX31_RS17090	0.16	-1.0
9,713	-		EX31_RS17090	0.16	+0.4
9,713	-		EX31_RS17090	0.16	+0.7
9,723	-		EX31_RS17090	0.17	-0.2
9,723	-		EX31_RS17090	0.17	+0.8
9,747	+		EX31_RS17090	0.19	+0.1
9,748	-		EX31_RS17090	0.19	+0.7
9,748	-		EX31_RS17090	0.19	+0.2
9,748	-		EX31_RS17090	0.19	+0.2
9,748	-		EX31_RS17090	0.19	+1.0
9,748	-		EX31_RS17090	0.19	+0.5
9,748	-		EX31_RS17090	0.19	+1.4
9,751	+		EX31_RS17090	0.19	-1.3
9,751	+		EX31_RS17090	0.19	+1.0
9,751	+		EX31_RS17090	0.19	+0.5
9,751	+		EX31_RS17090	0.19	-0.9
9,751	+		EX31_RS17090	0.19	+0.8
9,751	+		EX31_RS17090	0.19	+1.0
9,751	+		EX31_RS17090	0.19	-1.0
9,751	+		EX31_RS17090	0.19	+0.4
9,751	+		EX31_RS17090	0.19	+0.1
9,751	+		EX31_RS17090	0.19	+0.0
9,751	+		EX31_RS17090	0.19	+0.7
9,751	+		EX31_RS17090	0.19	+0.8
9,751	+		EX31_RS17090	0.19	-0.6
9,751	+		EX31_RS17090	0.19	-0.5
9,751	+		EX31_RS17090	0.19	+0.7
9,752	-		EX31_RS17090	0.19	+2.1
9,752	-		EX31_RS17090	0.19	-0.2
9,752	-		EX31_RS17090	0.19	+0.2
9,752	-		EX31_RS17090	0.19	-1.4
9,752	-		EX31_RS17090	0.19	+1.4
9,752	-		EX31_RS17090	0.19	-0.9
9,752	-		EX31_RS17090	0.19	-0.9
9,752	-		EX31_RS17090	0.19	-0.4
9,752	-		EX31_RS17090	0.19	-0.1
9,752	-		EX31_RS17090	0.19	-0.6
9,752	-		EX31_RS17090	0.19	+1.1
9,752	-		EX31_RS17090	0.19	-0.9
9,752	-		EX31_RS17090	0.19	-0.4
9,752	-		EX31_RS17090	0.19	+0.1
9,752	-		EX31_RS17090	0.19	+0.0
9,752	-		EX31_RS17090	0.19	-0.3
9,817	+		EX31_RS17090	0.25	+0.2
9,817	+		EX31_RS17090	0.25	+0.9
9,817	+		EX31_RS17090	0.25	-0.6
9,859	+		EX31_RS17090	0.28	-2.5
9,859	+		EX31_RS17090	0.28	+0.2
9,860	-		EX31_RS17090	0.28	+0.0
9,860	-		EX31_RS17090	0.28	-0.7
9,860	-		EX31_RS17090	0.28	-0.6
9,860	-		EX31_RS17090	0.28	+0.2
9,860	-		EX31_RS17090	0.28	+0.6
9,863	+		EX31_RS17090	0.28	+0.9
9,863	+		EX31_RS17090	0.28	+1.2
9,863	+		EX31_RS17090	0.28	-0.1
9,863	+		EX31_RS17090	0.28	+0.9
9,863	+		EX31_RS17090	0.28	+1.0
9,863	+		EX31_RS17090	0.28	+0.4
9,863	+		EX31_RS17090	0.28	-0.3
9,863	+		EX31_RS17090	0.28	-0.7
9,863	+		EX31_RS17090	0.28	-2.0
9,863	+		EX31_RS17090	0.28	+0.7
9,863	+		EX31_RS17090	0.28	-1.2
9,863	+		EX31_RS17090	0.28	+0.5
9,863	+		EX31_RS17090	0.28	+0.4
9,863	+		EX31_RS17090	0.28	-0.3
9,863	+		EX31_RS17090	0.28	+0.1
9,863	+		EX31_RS17090	0.28	-0.1
9,864	-		EX31_RS17090	0.28	-1.7
9,864	-		EX31_RS17090	0.28	+0.6
9,864	-		EX31_RS17090	0.28	-0.2
9,864	-		EX31_RS17090	0.28	-0.6
9,864	-		EX31_RS17090	0.28	-0.0
9,864	-		EX31_RS17090	0.28	+0.6
9,864	-		EX31_RS17090	0.28	-0.5
9,864	-		EX31_RS17090	0.28	+0.2
9,864	-		EX31_RS17090	0.28	+0.5
9,864	-		EX31_RS17090	0.28	+0.0
9,896	+		EX31_RS17090	0.31	-0.3
9,897	-		EX31_RS17090	0.31	-2.5
9,925	+		EX31_RS17090	0.33	-2.0
9,927	+		EX31_RS17090	0.33	-0.3
9,927	+		EX31_RS17090	0.33	-3.2
9,927	+		EX31_RS17090	0.33	-0.6
9,927	+		EX31_RS17090	0.33	-2.0
9,927	+		EX31_RS17090	0.33	+0.1
9,927	+		EX31_RS17090	0.33	+0.5
9,927	+		EX31_RS17090	0.33	-0.3
9,927	+		EX31_RS17090	0.33	+0.3
9,927	+		EX31_RS17090	0.33	-0.2
9,927	+		EX31_RS17090	0.33	-0.6
9,927	+		EX31_RS17090	0.33	+0.3
9,928	-		EX31_RS17090	0.34	-0.7
9,928	-		EX31_RS17090	0.34	-0.5
9,928	-		EX31_RS17090	0.34	-0.1
9,928	-		EX31_RS17090	0.34	+1.2
9,928	-		EX31_RS17090	0.34	-1.2
9,928	-		EX31_RS17090	0.34	+0.4
9,928	-		EX31_RS17090	0.34	-0.3
9,936	+		EX31_RS17090	0.34	+0.1
9,937	-		EX31_RS17090	0.34	+0.3
9,937	-		EX31_RS17090	0.34	+0.7
9,937	-		EX31_RS17090	0.34	-1.5
9,947	+		EX31_RS17090	0.35	-1.0
9,947	+		EX31_RS17090	0.35	+1.1
9,947	+		EX31_RS17090	0.35	+0.2
9,947	+		EX31_RS17090	0.35	+0.1
9,948	-		EX31_RS17090	0.35	-1.4
9,958	+		EX31_RS17090	0.36	+0.7
9,958	+		EX31_RS17090	0.36	-0.5
9,959	-		EX31_RS17090	0.36	-0.1
10,001	+		EX31_RS17090	0.39	+0.4
10,013	+		EX31_RS17090	0.40	-0.3
10,042	+		EX31_RS17090	0.43	+0.5
10,042	+		EX31_RS17090	0.43	+0.2
10,042	+		EX31_RS17090	0.43	-0.9
10,042	+		EX31_RS17090	0.43	+0.4
10,042	+		EX31_RS17090	0.43	-1.0
10,043	-		EX31_RS17090	0.43	-1.6
10,043	-		EX31_RS17090	0.43	+0.4
10,043	-		EX31_RS17090	0.43	+0.9
10,043	-		EX31_RS17090	0.43	-0.3
10,088	-		EX31_RS17090	0.46	-0.3
10,099	+		EX31_RS17090	0.47	-0.3
10,099	+		EX31_RS17090	0.47	+0.2
10,099	+		EX31_RS17090	0.47	+0.2
10,100	-		EX31_RS17090	0.47	-0.5
10,100	-		EX31_RS17090	0.47	-0.1
10,100	-		EX31_RS17090	0.47	+1.4
10,100	-		EX31_RS17090	0.47	-0.2
10,100	-		EX31_RS17090	0.47	-0.0
10,100	-		EX31_RS17090	0.47	-0.3
10,100	-		EX31_RS17090	0.47	+0.1
10,100	-		EX31_RS17090	0.47	-0.8
10,120	+		EX31_RS17090	0.49	-0.6
10,129	-		EX31_RS17090	0.50	+0.1
10,129	-		EX31_RS17090	0.50	+0.7
10,144	+		EX31_RS17090	0.51	+0.4
10,144	+		EX31_RS17090	0.51	+0.4
10,145	-		EX31_RS17090	0.51	+0.2
10,163	+		EX31_RS17090	0.52	+0.7
10,163	+		EX31_RS17090	0.52	+0.1
10,165	+		EX31_RS17090	0.53	-0.1
10,165	+		EX31_RS17090	0.53	-0.4
10,165	+		EX31_RS17090	0.53	+0.7
10,165	+		EX31_RS17090	0.53	+1.1
10,166	-		EX31_RS17090	0.53	-0.7
10,166	-		EX31_RS17090	0.53	+1.4
10,166	-		EX31_RS17090	0.53	-0.1
10,166	-		EX31_RS17090	0.53	+0.3
10,166	-		EX31_RS17090	0.53	+0.3
10,166	-		EX31_RS17090	0.53	-2.9
10,190	+		EX31_RS17090	0.55	-0.7
10,191	-		EX31_RS17090	0.55	+0.6
10,191	-		EX31_RS17090	0.55	-1.4
10,191	-		EX31_RS17090	0.55	-1.1
10,218	+		EX31_RS17090	0.57	+2.0
10,255	+		EX31_RS17090	0.60	+0.6
10,256	-		EX31_RS17090	0.60	+1.0
10,260	+		EX31_RS17090	0.60	-2.2
10,274	+		EX31_RS17090	0.61	-0.4
10,274	+		EX31_RS17090	0.61	-0.2
10,274	+		EX31_RS17090	0.61	-0.6
10,275	-		EX31_RS17090	0.61	+0.8
10,326	-		EX31_RS17090	0.65	+1.3
10,330	-		EX31_RS17090	0.66	-1.6
10,356	+		EX31_RS17090	0.68	-0.4
10,356	+		EX31_RS17090	0.68	+0.4
10,357	-		EX31_RS17090	0.68	-0.5
10,393	+		EX31_RS17090	0.71	+0.9
10,393	+		EX31_RS17090	0.71	-1.2
10,393	+		EX31_RS17090	0.71	+0.1
10,393	+		EX31_RS17090	0.71	-0.4
10,394	-		EX31_RS17090	0.71	-1.8
10,394	-		EX31_RS17090	0.71	+0.7
10,394	-		EX31_RS17090	0.71	+1.0