Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS12015 and EX31_RS12020 are separated by 300 nucleotides EX31_RS12020 and EX31_RS12025 are separated by 125 nucleotides
EX31_RS12015: EX31_RS12015 - metallophosphoesterase, at 67,262 to 68,845
_RS12015
EX31_RS12020: EX31_RS12020 - FAD-dependent urate hydroxylase HpxO, at 69,146 to 70,303
_RS12020
EX31_RS12025: EX31_RS12025 - hypothetical protein, at 70,429 to 72,015
_RS12025
Position (kb) 69
70
71 Strain fitness (log2 ratio) -2
-1
0
1
2 at 68.209 kb on + strand, within EX31_RS12015 at 68.209 kb on + strand, within EX31_RS12015 at 68.247 kb on + strand, within EX31_RS12015 at 68.263 kb on - strand, within EX31_RS12015 at 68.269 kb on + strand, within EX31_RS12015 at 68.270 kb on - strand, within EX31_RS12015 at 68.280 kb on + strand, within EX31_RS12015 at 68.281 kb on - strand, within EX31_RS12015 at 68.281 kb on - strand, within EX31_RS12015 at 68.335 kb on + strand, within EX31_RS12015 at 68.335 kb on + strand, within EX31_RS12015 at 68.336 kb on - strand, within EX31_RS12015 at 68.337 kb on + strand, within EX31_RS12015 at 68.337 kb on + strand, within EX31_RS12015 at 68.337 kb on + strand, within EX31_RS12015 at 68.337 kb on + strand, within EX31_RS12015 at 68.338 kb on - strand, within EX31_RS12015 at 68.386 kb on + strand, within EX31_RS12015 at 68.386 kb on + strand, within EX31_RS12015 at 68.448 kb on - strand, within EX31_RS12015 at 68.472 kb on - strand, within EX31_RS12015 at 68.473 kb on + strand, within EX31_RS12015 at 68.474 kb on - strand, within EX31_RS12015 at 68.474 kb on - strand, within EX31_RS12015 at 68.474 kb on - strand, within EX31_RS12015 at 68.621 kb on + strand, within EX31_RS12015 at 68.621 kb on + strand, within EX31_RS12015 at 68.621 kb on + strand, within EX31_RS12015 at 68.622 kb on - strand, within EX31_RS12015 at 68.622 kb on - strand, within EX31_RS12015 at 68.624 kb on - strand, within EX31_RS12015 at 68.635 kb on + strand, within EX31_RS12015 at 68.734 kb on - strand at 68.756 kb on + strand at 68.757 kb on - strand at 68.757 kb on - strand at 68.793 kb on + strand at 68.793 kb on + strand at 68.794 kb on - strand at 68.843 kb on + strand at 68.844 kb on - strand at 68.873 kb on + strand at 68.873 kb on + strand at 68.873 kb on + strand at 68.874 kb on - strand at 68.907 kb on + strand at 68.920 kb on + strand at 68.920 kb on + strand at 68.921 kb on - strand at 68.983 kb on + strand at 68.984 kb on - strand at 68.984 kb on - strand at 68.984 kb on - strand at 68.986 kb on + strand at 68.986 kb on + strand at 68.986 kb on + strand at 68.986 kb on + strand at 68.986 kb on + strand at 68.986 kb on + strand at 69.069 kb on + strand at 69.069 kb on + strand at 69.069 kb on + strand at 69.070 kb on - strand at 69.070 kb on - strand at 69.070 kb on - strand at 69.070 kb on - strand at 69.070 kb on - strand at 69.071 kb on + strand at 69.072 kb on - strand at 69.072 kb on - strand at 69.072 kb on - strand at 69.145 kb on + strand at 69.145 kb on + strand at 69.230 kb on + strand at 69.230 kb on + strand at 69.230 kb on + strand at 69.230 kb on + strand at 69.230 kb on + strand at 69.230 kb on + strand at 69.231 kb on - strand at 69.231 kb on - strand at 69.231 kb on - strand at 69.292 kb on - strand, within EX31_RS12020 at 69.305 kb on + strand, within EX31_RS12020 at 69.306 kb on - strand, within EX31_RS12020 at 69.306 kb on - strand, within EX31_RS12020 at 69.362 kb on + strand, within EX31_RS12020 at 69.362 kb on + strand, within EX31_RS12020 at 69.362 kb on + strand, within EX31_RS12020 at 69.363 kb on - strand, within EX31_RS12020 at 69.363 kb on - strand, within EX31_RS12020 at 69.363 kb on - strand, within EX31_RS12020 at 69.441 kb on - strand, within EX31_RS12020 at 69.441 kb on - strand, within EX31_RS12020 at 69.485 kb on + strand, within EX31_RS12020 at 69.485 kb on + strand, within EX31_RS12020 at 69.485 kb on + strand, within EX31_RS12020 at 69.485 kb on + strand, within EX31_RS12020 at 69.486 kb on - strand, within EX31_RS12020 at 69.486 kb on - strand, within EX31_RS12020 at 69.671 kb on + strand, within EX31_RS12020 at 69.676 kb on + strand, within EX31_RS12020 at 69.677 kb on - strand, within EX31_RS12020 at 69.791 kb on + strand, within EX31_RS12020 at 69.792 kb on - strand, within EX31_RS12020 at 69.841 kb on + strand, within EX31_RS12020 at 69.841 kb on + strand, within EX31_RS12020 at 69.842 kb on - strand, within EX31_RS12020 at 69.842 kb on - strand, within EX31_RS12020 at 69.866 kb on + strand, within EX31_RS12020 at 69.866 kb on + strand, within EX31_RS12020 at 69.867 kb on - strand, within EX31_RS12020 at 69.867 kb on - strand, within EX31_RS12020 at 69.867 kb on - strand, within EX31_RS12020 at 69.961 kb on + strand, within EX31_RS12020 at 69.961 kb on + strand, within EX31_RS12020 at 69.961 kb on + strand, within EX31_RS12020 at 69.962 kb on - strand, within EX31_RS12020 at 70.075 kb on + strand, within EX31_RS12020 at 70.075 kb on + strand, within EX31_RS12020 at 70.075 kb on + strand, within EX31_RS12020 at 70.075 kb on + strand, within EX31_RS12020 at 70.075 kb on + strand, within EX31_RS12020 at 70.076 kb on - strand, within EX31_RS12020 at 70.076 kb on - strand, within EX31_RS12020 at 70.076 kb on - strand, within EX31_RS12020 at 70.076 kb on - strand, within EX31_RS12020 at 70.095 kb on + strand, within EX31_RS12020 at 70.095 kb on + strand, within EX31_RS12020 at 70.095 kb on + strand, within EX31_RS12020 at 70.096 kb on - strand, within EX31_RS12020 at 70.096 kb on - strand, within EX31_RS12020 at 70.121 kb on + strand, within EX31_RS12020 at 70.139 kb on + strand, within EX31_RS12020 at 70.140 kb on - strand, within EX31_RS12020 at 70.224 kb on - strand at 70.224 kb on - strand at 70.329 kb on + strand at 70.329 kb on + strand at 70.329 kb on + strand at 70.329 kb on + strand at 70.329 kb on + strand at 70.329 kb on + strand at 70.329 kb on + strand at 70.329 kb on + strand at 70.329 kb on + strand at 70.330 kb on - strand at 70.330 kb on - strand at 70.333 kb on + strand at 70.333 kb on + strand at 70.334 kb on - strand at 70.334 kb on - strand at 70.334 kb on - strand at 70.366 kb on + strand at 70.367 kb on - strand at 70.367 kb on - strand at 70.386 kb on + strand at 70.386 kb on + strand at 70.387 kb on - strand at 70.387 kb on - strand at 70.437 kb on + strand at 70.437 kb on + strand at 70.438 kb on - strand at 70.438 kb on - strand at 70.438 kb on - strand at 70.452 kb on + strand at 70.453 kb on - strand at 70.453 kb on - strand at 70.453 kb on - strand at 70.453 kb on - strand at 70.453 kb on - strand at 70.477 kb on - strand at 70.589 kb on - strand, within EX31_RS12025 at 70.692 kb on + strand, within EX31_RS12025 at 70.693 kb on - strand, within EX31_RS12025 at 70.744 kb on + strand, within EX31_RS12025 at 70.825 kb on - strand, within EX31_RS12025 at 70.857 kb on + strand, within EX31_RS12025 at 70.857 kb on + strand, within EX31_RS12025 at 70.857 kb on + strand, within EX31_RS12025 at 70.857 kb on + strand, within EX31_RS12025 at 70.857 kb on + strand, within EX31_RS12025 at 70.857 kb on + strand, within EX31_RS12025 at 70.857 kb on + strand, within EX31_RS12025 at 70.884 kb on + strand, within EX31_RS12025 at 71.062 kb on - strand, within EX31_RS12025 at 71.087 kb on + strand, within EX31_RS12025 at 71.087 kb on + strand, within EX31_RS12025 at 71.087 kb on + strand, within EX31_RS12025 at 71.087 kb on + strand, within EX31_RS12025 at 71.087 kb on + strand, within EX31_RS12025 at 71.087 kb on + strand, within EX31_RS12025 at 71.087 kb on + strand, within EX31_RS12025 at 71.087 kb on + strand, within EX31_RS12025 at 71.087 kb on + strand, within EX31_RS12025 at 71.087 kb on + strand, within EX31_RS12025 at 71.087 kb on + strand, within EX31_RS12025 at 71.087 kb on + strand, within EX31_RS12025 at 71.087 kb on + strand, within EX31_RS12025 at 71.087 kb on + strand, within EX31_RS12025 at 71.087 kb on + strand, within EX31_RS12025 at 71.087 kb on + strand, within EX31_RS12025 at 71.087 kb on + strand, within EX31_RS12025 at 71.087 kb on + strand, within EX31_RS12025 at 71.087 kb on + strand, within EX31_RS12025 at 71.087 kb on + strand, within EX31_RS12025 at 71.087 kb on + strand, within EX31_RS12025 at 71.087 kb on + strand, within EX31_RS12025 at 71.088 kb on - strand, within EX31_RS12025 at 71.088 kb on - strand, within EX31_RS12025 at 71.088 kb on - strand, within EX31_RS12025 at 71.088 kb on - strand, within EX31_RS12025 at 71.088 kb on - strand, within EX31_RS12025 at 71.088 kb on - strand, within EX31_RS12025 at 71.088 kb on - strand, within EX31_RS12025 at 71.088 kb on - strand, within EX31_RS12025 at 71.088 kb on - strand, within EX31_RS12025 at 71.088 kb on - strand, within EX31_RS12025 at 71.088 kb on - strand, within EX31_RS12025 at 71.112 kb on + strand, within EX31_RS12025 at 71.257 kb on + strand, within EX31_RS12025 at 71.257 kb on + strand, within EX31_RS12025 at 71.258 kb on - strand, within EX31_RS12025 at 71.292 kb on + strand, within EX31_RS12025 at 71.292 kb on + strand, within EX31_RS12025 at 71.292 kb on + strand, within EX31_RS12025 at 71.293 kb on - strand, within EX31_RS12025
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 68,209 + EX31_RS12015 0.60 +0.1 68,209 + EX31_RS12015 0.60 +1.0 68,247 + EX31_RS12015 0.62 +0.4 68,263 - EX31_RS12015 0.63 +0.1 68,269 + EX31_RS12015 0.64 +0.4 68,270 - EX31_RS12015 0.64 +0.3 68,280 + EX31_RS12015 0.64 +0.0 68,281 - EX31_RS12015 0.64 +0.4 68,281 - EX31_RS12015 0.64 -0.4 68,335 + EX31_RS12015 0.68 +0.7 68,335 + EX31_RS12015 0.68 -0.1 68,336 - EX31_RS12015 0.68 +1.3 68,337 + EX31_RS12015 0.68 +0.1 68,337 + EX31_RS12015 0.68 +0.2 68,337 + EX31_RS12015 0.68 -0.0 68,337 + EX31_RS12015 0.68 -0.1 68,338 - EX31_RS12015 0.68 +1.0 68,386 + EX31_RS12015 0.71 +0.3 68,386 + EX31_RS12015 0.71 -0.2 68,448 - EX31_RS12015 0.75 -0.8 68,472 - EX31_RS12015 0.76 -0.9 68,473 + EX31_RS12015 0.76 +0.4 68,474 - EX31_RS12015 0.77 +0.3 68,474 - EX31_RS12015 0.77 -0.2 68,474 - EX31_RS12015 0.77 -0.3 68,621 + EX31_RS12015 0.86 +0.2 68,621 + EX31_RS12015 0.86 +0.1 68,621 + EX31_RS12015 0.86 +0.3 68,622 - EX31_RS12015 0.86 +0.2 68,622 - EX31_RS12015 0.86 +0.3 68,624 - EX31_RS12015 0.86 -0.2 68,635 + EX31_RS12015 0.87 -1.0 68,734 - +0.4 68,756 + -0.6 68,757 - +0.4 68,757 - +0.1 68,793 + +0.0 68,793 + -0.1 68,794 - +0.4 68,843 + +0.3 68,844 - +0.1 68,873 + +0.0 68,873 + +0.7 68,873 + +0.5 68,874 - +0.1 68,907 + -0.3 68,920 + -2.0 68,920 + +0.7 68,921 - -1.6 68,983 + -2.0 68,984 - +0.4 68,984 - +0.1 68,984 - +1.3 68,986 + -0.4 68,986 + -2.0 68,986 + -0.8 68,986 + +2.1 68,986 + -0.2 68,986 + -1.0 69,069 + -1.0 69,069 + +0.5 69,069 + +0.3 69,070 - -1.0 69,070 - +0.4 69,070 - -0.9 69,070 - -0.2 69,070 - -1.5 69,071 + +0.2 69,072 - -0.4 69,072 - -0.4 69,072 - +0.2 69,145 + +0.9 69,145 + -0.4 69,230 + +1.2 69,230 + +0.0 69,230 + -0.1 69,230 + +0.7 69,230 + -0.0 69,230 + -0.2 69,231 - -0.0 69,231 - -0.8 69,231 - -0.1 69,292 - EX31_RS12020 0.13 +0.4 69,305 + EX31_RS12020 0.14 +0.7 69,306 - EX31_RS12020 0.14 -0.5 69,306 - EX31_RS12020 0.14 +0.3 69,362 + EX31_RS12020 0.19 -0.9 69,362 + EX31_RS12020 0.19 -0.4 69,362 + EX31_RS12020 0.19 +0.1 69,363 - EX31_RS12020 0.19 +0.7 69,363 - EX31_RS12020 0.19 +0.7 69,363 - EX31_RS12020 0.19 +0.5 69,441 - EX31_RS12020 0.25 -2.1 69,441 - EX31_RS12020 0.25 +0.5 69,485 + EX31_RS12020 0.29 +0.6 69,485 + EX31_RS12020 0.29 +0.3 69,485 + EX31_RS12020 0.29 -0.0 69,485 + EX31_RS12020 0.29 +0.2 69,486 - EX31_RS12020 0.29 +0.7 69,486 - EX31_RS12020 0.29 +0.4 69,671 + EX31_RS12020 0.45 +0.4 69,676 + EX31_RS12020 0.46 +0.6 69,677 - EX31_RS12020 0.46 +0.5 69,791 + EX31_RS12020 0.56 +0.5 69,792 - EX31_RS12020 0.56 +0.1 69,841 + EX31_RS12020 0.60 +0.0 69,841 + EX31_RS12020 0.60 -0.8 69,842 - EX31_RS12020 0.60 -0.4 69,842 - EX31_RS12020 0.60 +0.5 69,866 + EX31_RS12020 0.62 +0.5 69,866 + EX31_RS12020 0.62 +0.8 69,867 - EX31_RS12020 0.62 -1.0 69,867 - EX31_RS12020 0.62 +0.6 69,867 - EX31_RS12020 0.62 -0.2 69,961 + EX31_RS12020 0.70 +1.1 69,961 + EX31_RS12020 0.70 -1.5 69,961 + EX31_RS12020 0.70 +0.8 69,962 - EX31_RS12020 0.70 +0.7 70,075 + EX31_RS12020 0.80 -0.3 70,075 + EX31_RS12020 0.80 -0.2 70,075 + EX31_RS12020 0.80 +0.6 70,075 + EX31_RS12020 0.80 +0.0 70,075 + EX31_RS12020 0.80 -0.1 70,076 - EX31_RS12020 0.80 +0.7 70,076 - EX31_RS12020 0.80 +0.1 70,076 - EX31_RS12020 0.80 -0.3 70,076 - EX31_RS12020 0.80 +1.3 70,095 + EX31_RS12020 0.82 -0.9 70,095 + EX31_RS12020 0.82 -1.0 70,095 + EX31_RS12020 0.82 -0.3 70,096 - EX31_RS12020 0.82 -0.2 70,096 - EX31_RS12020 0.82 +0.1 70,121 + EX31_RS12020 0.84 +0.4 70,139 + EX31_RS12020 0.86 +1.0 70,140 - EX31_RS12020 0.86 -0.4 70,224 - -0.0 70,224 - +0.3 70,329 + +0.2 70,329 + -0.1 70,329 + -0.3 70,329 + -1.2 70,329 + +0.5 70,329 + -0.6 70,329 + -0.7 70,329 + -1.0 70,329 + -1.0 70,330 - +0.4 70,330 - -1.3 70,333 + -0.4 70,333 + +0.5 70,334 - +0.8 70,334 - -0.1 70,334 - -0.5 70,366 + -0.9 70,367 - +0.3 70,367 - -1.5 70,386 + -0.3 70,386 + +0.0 70,387 - -0.3 70,387 - -0.2 70,437 + +0.5 70,437 + +0.4 70,438 - +0.1 70,438 - -0.1 70,438 - -0.0 70,452 + +1.0 70,453 - -0.2 70,453 - -0.4 70,453 - -1.3 70,453 - -1.9 70,453 - -1.3 70,477 - +0.6 70,589 - EX31_RS12025 0.10 +0.1 70,692 + EX31_RS12025 0.17 +0.6 70,693 - EX31_RS12025 0.17 +0.1 70,744 + EX31_RS12025 0.20 +0.4 70,825 - EX31_RS12025 0.25 +0.0 70,857 + EX31_RS12025 0.27 +0.5 70,857 + EX31_RS12025 0.27 +0.2 70,857 + EX31_RS12025 0.27 +0.1 70,857 + EX31_RS12025 0.27 -0.5 70,857 + EX31_RS12025 0.27 -0.2 70,857 + EX31_RS12025 0.27 -0.3 70,857 + EX31_RS12025 0.27 +0.2 70,884 + EX31_RS12025 0.29 +0.2 71,062 - EX31_RS12025 0.40 -0.4 71,087 + EX31_RS12025 0.41 -0.0 71,087 + EX31_RS12025 0.41 -0.4 71,087 + EX31_RS12025 0.41 -0.6 71,087 + EX31_RS12025 0.41 -2.5 71,087 + EX31_RS12025 0.41 -0.5 71,087 + EX31_RS12025 0.41 -0.1 71,087 + EX31_RS12025 0.41 -2.3 71,087 + EX31_RS12025 0.41 +0.3 71,087 + EX31_RS12025 0.41 +0.8 71,087 + EX31_RS12025 0.41 -0.1 71,087 + EX31_RS12025 0.41 -0.2 71,087 + EX31_RS12025 0.41 -0.3 71,087 + EX31_RS12025 0.41 -0.5 71,087 + EX31_RS12025 0.41 +0.5 71,087 + EX31_RS12025 0.41 -0.0 71,087 + EX31_RS12025 0.41 -0.3 71,087 + EX31_RS12025 0.41 -1.4 71,087 + EX31_RS12025 0.41 +0.2 71,087 + EX31_RS12025 0.41 -0.5 71,087 + EX31_RS12025 0.41 -0.3 71,087 + EX31_RS12025 0.41 -0.1 71,087 + EX31_RS12025 0.41 -0.9 71,088 - EX31_RS12025 0.42 -0.5 71,088 - EX31_RS12025 0.42 -0.0 71,088 - EX31_RS12025 0.42 -0.2 71,088 - EX31_RS12025 0.42 +0.3 71,088 - EX31_RS12025 0.42 +0.8 71,088 - EX31_RS12025 0.42 -1.2 71,088 - EX31_RS12025 0.42 +0.7 71,088 - EX31_RS12025 0.42 +0.4 71,088 - EX31_RS12025 0.42 -1.3 71,088 - EX31_RS12025 0.42 -0.1 71,088 - EX31_RS12025 0.42 +0.5 71,112 + EX31_RS12025 0.43 -0.5 71,257 + EX31_RS12025 0.52 +0.5 71,257 + EX31_RS12025 0.52 -0.5 71,258 - EX31_RS12025 0.52 -0.3 71,292 + EX31_RS12025 0.54 +0.6 71,292 + EX31_RS12025 0.54 -0.3 71,292 + EX31_RS12025 0.54 -0.5 71,293 - EX31_RS12025 0.54 +0.8
Or see this region's nucleotide sequence