Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS11200 and EX31_RS11205 are separated by 448 nucleotides EX31_RS11205 and EX31_RS11210 are separated by 192 nucleotides
EX31_RS11200: EX31_RS11200 - alpha/beta fold hydrolase, at 172,102 to 172,884
_RS11200
EX31_RS11205: EX31_RS11205 - chemotaxis protein CheV, at 173,333 to 174,304
_RS11205
EX31_RS11210: EX31_RS11210 - oxidoreductase, at 174,497 to 175,474
_RS11210
Position (kb) 173
174
175 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 172.335 kb on - strand, within EX31_RS11200 at 172.335 kb on - strand, within EX31_RS11200 at 172.335 kb on - strand, within EX31_RS11200 at 172.387 kb on - strand, within EX31_RS11200 at 172.475 kb on - strand, within EX31_RS11200 at 172.475 kb on - strand, within EX31_RS11200 at 172.475 kb on - strand, within EX31_RS11200 at 172.530 kb on + strand, within EX31_RS11200 at 172.619 kb on + strand, within EX31_RS11200 at 172.620 kb on - strand, within EX31_RS11200 at 172.620 kb on - strand, within EX31_RS11200 at 172.886 kb on + strand at 172.886 kb on + strand at 172.887 kb on - strand at 172.897 kb on - strand at 172.938 kb on - strand at 172.964 kb on - strand at 172.964 kb on - strand at 172.965 kb on + strand at 172.965 kb on + strand at 172.966 kb on - strand at 172.966 kb on - strand at 172.966 kb on - strand at 172.966 kb on - strand at 172.966 kb on - strand at 172.991 kb on - strand at 173.002 kb on - strand at 173.025 kb on - strand at 173.025 kb on - strand at 173.059 kb on + strand at 173.079 kb on - strand at 173.079 kb on - strand at 173.099 kb on - strand at 173.102 kb on - strand at 173.131 kb on + strand at 173.175 kb on + strand at 173.312 kb on - strand at 173.335 kb on - strand at 173.431 kb on + strand, within EX31_RS11205 at 173.432 kb on - strand, within EX31_RS11205 at 173.530 kb on + strand, within EX31_RS11205 at 173.564 kb on + strand, within EX31_RS11205 at 173.565 kb on - strand, within EX31_RS11205 at 173.786 kb on - strand, within EX31_RS11205 at 173.797 kb on + strand, within EX31_RS11205 at 173.798 kb on - strand, within EX31_RS11205 at 173.798 kb on - strand, within EX31_RS11205 at 173.891 kb on - strand, within EX31_RS11205 at 174.305 kb on - strand at 174.325 kb on + strand at 174.340 kb on - strand at 174.340 kb on - strand at 174.352 kb on + strand at 174.352 kb on + strand at 174.352 kb on + strand at 174.352 kb on + strand at 174.353 kb on - strand at 174.353 kb on - strand at 174.353 kb on - strand at 174.353 kb on - strand at 174.353 kb on - strand at 174.353 kb on - strand at 174.353 kb on - strand at 174.408 kb on + strand at 174.408 kb on + strand at 174.409 kb on - strand at 174.436 kb on - strand at 174.622 kb on + strand, within EX31_RS11210 at 174.911 kb on - strand, within EX31_RS11210 at 174.918 kb on + strand, within EX31_RS11210 at 174.919 kb on - strand, within EX31_RS11210 at 174.928 kb on + strand, within EX31_RS11210 at 174.928 kb on + strand, within EX31_RS11210 at 174.928 kb on + strand, within EX31_RS11210 at 174.929 kb on - strand, within EX31_RS11210 at 174.929 kb on - strand, within EX31_RS11210 at 174.959 kb on - strand, within EX31_RS11210 at 174.959 kb on - strand, within EX31_RS11210 at 174.970 kb on + strand, within EX31_RS11210 at 174.970 kb on + strand, within EX31_RS11210 at 174.971 kb on - strand, within EX31_RS11210 at 174.971 kb on - strand, within EX31_RS11210 at 174.971 kb on - strand, within EX31_RS11210 at 174.971 kb on - strand, within EX31_RS11210 at 174.971 kb on - strand, within EX31_RS11210 at 174.971 kb on - strand, within EX31_RS11210 at 174.971 kb on - strand, within EX31_RS11210 at 174.992 kb on - strand, within EX31_RS11210
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 172,335 - EX31_RS11200 0.30 -0.3 172,335 - EX31_RS11200 0.30 +1.4 172,335 - EX31_RS11200 0.30 +1.0 172,387 - EX31_RS11200 0.36 +0.3 172,475 - EX31_RS11200 0.48 -1.6 172,475 - EX31_RS11200 0.48 -1.5 172,475 - EX31_RS11200 0.48 -0.9 172,530 + EX31_RS11200 0.55 +1.6 172,619 + EX31_RS11200 0.66 +0.3 172,620 - EX31_RS11200 0.66 -1.6 172,620 - EX31_RS11200 0.66 -0.1 172,886 + +0.6 172,886 + +0.1 172,887 - -0.3 172,897 - +0.5 172,938 - -0.0 172,964 - -0.7 172,964 - +1.2 172,965 + -0.3 172,965 + -1.7 172,966 - -0.4 172,966 - -0.1 172,966 - -1.4 172,966 - -1.9 172,966 - +0.7 172,991 - +0.6 173,002 - -1.8 173,025 - -0.1 173,025 - +0.4 173,059 + +0.5 173,079 - +0.2 173,079 - +1.3 173,099 - -0.1 173,102 - -0.2 173,131 + +0.9 173,175 + -0.8 173,312 - -0.6 173,335 - -0.5 173,431 + EX31_RS11205 0.10 -0.2 173,432 - EX31_RS11205 0.10 -3.0 173,530 + EX31_RS11205 0.20 -0.6 173,564 + EX31_RS11205 0.24 -0.9 173,565 - EX31_RS11205 0.24 +0.6 173,786 - EX31_RS11205 0.47 +0.4 173,797 + EX31_RS11205 0.48 +1.3 173,798 - EX31_RS11205 0.48 -0.5 173,798 - EX31_RS11205 0.48 -0.8 173,891 - EX31_RS11205 0.57 -0.4 174,305 - +0.6 174,325 + -0.8 174,340 - +0.3 174,340 - -0.2 174,352 + -1.6 174,352 + +0.9 174,352 + -0.3 174,352 + -0.7 174,353 - +0.2 174,353 - +0.9 174,353 - -0.7 174,353 - -0.1 174,353 - +0.5 174,353 - -0.1 174,353 - -0.6 174,408 + -0.1 174,408 + -0.0 174,409 - -2.0 174,436 - -0.4 174,622 + EX31_RS11210 0.13 -0.6 174,911 - EX31_RS11210 0.42 +0.6 174,918 + EX31_RS11210 0.43 +0.4 174,919 - EX31_RS11210 0.43 -0.0 174,928 + EX31_RS11210 0.44 -0.9 174,928 + EX31_RS11210 0.44 -1.0 174,928 + EX31_RS11210 0.44 -0.5 174,929 - EX31_RS11210 0.44 -0.1 174,929 - EX31_RS11210 0.44 +0.0 174,959 - EX31_RS11210 0.47 -0.2 174,959 - EX31_RS11210 0.47 +0.3 174,970 + EX31_RS11210 0.48 -0.8 174,970 + EX31_RS11210 0.48 -1.8 174,971 - EX31_RS11210 0.48 -1.0 174,971 - EX31_RS11210 0.48 +0.6 174,971 - EX31_RS11210 0.48 -0.1 174,971 - EX31_RS11210 0.48 -0.2 174,971 - EX31_RS11210 0.48 +0.0 174,971 - EX31_RS11210 0.48 +0.3 174,971 - EX31_RS11210 0.48 -0.0 174,992 - EX31_RS11210 0.51 +0.3
Or see this region's nucleotide sequence