Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS05130 and EX31_RS05135 are separated by 41 nucleotides EX31_RS05135 and EX31_RS05140 are separated by 139 nucleotides EX31_RS05140 and EX31_RS05145 are separated by 311 nucleotides
EX31_RS05130: EX31_RS05130 - HAMP domain-containing protein, at 161,981 to 163,636
_RS05130
EX31_RS05135: EX31_RS05135 - hypothetical protein, at 163,678 to 163,986
_RS05135
EX31_RS05140: EX31_RS05140 - NAD(P)/FAD-dependent oxidoreductase, at 164,126 to 165,328
_RS05140
EX31_RS05145: EX31_RS05145 - inorganic phosphate transporter PitA, at 165,640 to 167,145
_RS05145
Position (kb) 164
165
166 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 163.303 kb on + strand, within EX31_RS05130 at 163.304 kb on - strand, within EX31_RS05130 at 163.647 kb on - strand at 163.657 kb on + strand at 163.658 kb on - strand at 163.677 kb on + strand at 163.698 kb on + strand at 163.730 kb on + strand, within EX31_RS05135 at 163.801 kb on + strand, within EX31_RS05135 at 163.801 kb on + strand, within EX31_RS05135 at 163.802 kb on - strand, within EX31_RS05135 at 163.802 kb on - strand, within EX31_RS05135 at 163.802 kb on - strand, within EX31_RS05135 at 163.802 kb on - strand, within EX31_RS05135 at 163.806 kb on + strand, within EX31_RS05135 at 163.806 kb on + strand, within EX31_RS05135 at 163.806 kb on + strand, within EX31_RS05135 at 163.806 kb on + strand, within EX31_RS05135 at 163.806 kb on + strand, within EX31_RS05135 at 163.807 kb on - strand, within EX31_RS05135 at 163.807 kb on - strand, within EX31_RS05135 at 163.807 kb on - strand, within EX31_RS05135 at 163.807 kb on - strand, within EX31_RS05135 at 163.807 kb on - strand, within EX31_RS05135 at 163.809 kb on + strand, within EX31_RS05135 at 163.809 kb on + strand, within EX31_RS05135 at 163.809 kb on + strand, within EX31_RS05135 at 163.809 kb on + strand, within EX31_RS05135 at 163.809 kb on + strand, within EX31_RS05135 at 163.809 kb on + strand, within EX31_RS05135 at 163.809 kb on + strand, within EX31_RS05135 at 163.810 kb on - strand, within EX31_RS05135 at 163.863 kb on + strand, within EX31_RS05135 at 163.863 kb on + strand, within EX31_RS05135 at 163.864 kb on - strand, within EX31_RS05135 at 163.879 kb on + strand, within EX31_RS05135 at 163.879 kb on + strand, within EX31_RS05135 at 163.879 kb on + strand, within EX31_RS05135 at 163.879 kb on + strand, within EX31_RS05135 at 163.879 kb on + strand, within EX31_RS05135 at 163.880 kb on - strand, within EX31_RS05135 at 163.880 kb on - strand, within EX31_RS05135 at 163.880 kb on - strand, within EX31_RS05135 at 163.896 kb on + strand, within EX31_RS05135 at 163.896 kb on + strand, within EX31_RS05135 at 163.896 kb on + strand, within EX31_RS05135 at 163.896 kb on + strand, within EX31_RS05135 at 163.896 kb on + strand, within EX31_RS05135 at 163.897 kb on - strand, within EX31_RS05135 at 163.900 kb on - strand, within EX31_RS05135 at 163.900 kb on - strand, within EX31_RS05135 at 163.906 kb on + strand, within EX31_RS05135 at 163.906 kb on + strand, within EX31_RS05135 at 163.906 kb on + strand, within EX31_RS05135 at 163.906 kb on + strand, within EX31_RS05135 at 163.906 kb on + strand, within EX31_RS05135 at 163.906 kb on + strand, within EX31_RS05135 at 163.907 kb on - strand, within EX31_RS05135 at 163.907 kb on - strand, within EX31_RS05135 at 163.907 kb on - strand, within EX31_RS05135 at 163.907 kb on - strand, within EX31_RS05135 at 163.907 kb on - strand, within EX31_RS05135 at 163.907 kb on - strand, within EX31_RS05135 at 163.907 kb on - strand, within EX31_RS05135 at 163.909 kb on + strand, within EX31_RS05135 at 163.909 kb on + strand, within EX31_RS05135 at 163.910 kb on - strand, within EX31_RS05135 at 163.910 kb on - strand, within EX31_RS05135 at 163.925 kb on + strand, within EX31_RS05135 at 163.926 kb on - strand, within EX31_RS05135 at 163.926 kb on - strand, within EX31_RS05135 at 163.926 kb on - strand, within EX31_RS05135 at 163.929 kb on + strand, within EX31_RS05135 at 163.929 kb on + strand, within EX31_RS05135 at 163.929 kb on + strand, within EX31_RS05135 at 164.004 kb on + strand at 164.004 kb on + strand at 164.031 kb on + strand at 164.076 kb on - strand at 164.076 kb on - strand at 164.117 kb on + strand at 164.117 kb on + strand at 164.117 kb on + strand at 164.117 kb on + strand at 164.117 kb on + strand at 164.118 kb on - strand at 164.118 kb on - strand at 164.118 kb on - strand at 164.118 kb on - strand at 164.118 kb on - strand at 164.118 kb on - strand at 164.121 kb on + strand at 164.121 kb on + strand at 164.121 kb on + strand at 164.122 kb on - strand at 164.127 kb on + strand at 164.127 kb on + strand at 164.127 kb on + strand at 164.128 kb on - strand at 164.128 kb on - strand at 164.128 kb on - strand at 164.241 kb on + strand at 164.241 kb on + strand at 164.241 kb on + strand at 164.241 kb on + strand at 164.241 kb on + strand at 164.241 kb on + strand at 164.242 kb on - strand at 164.282 kb on + strand, within EX31_RS05140 at 164.282 kb on + strand, within EX31_RS05140 at 164.282 kb on + strand, within EX31_RS05140 at 164.283 kb on - strand, within EX31_RS05140 at 164.283 kb on - strand, within EX31_RS05140 at 164.283 kb on - strand, within EX31_RS05140 at 164.351 kb on + strand, within EX31_RS05140 at 164.351 kb on + strand, within EX31_RS05140 at 164.351 kb on + strand, within EX31_RS05140 at 164.592 kb on + strand, within EX31_RS05140 at 164.600 kb on + strand, within EX31_RS05140 at 164.606 kb on + strand, within EX31_RS05140 at 164.607 kb on - strand, within EX31_RS05140 at 164.607 kb on - strand, within EX31_RS05140 at 164.639 kb on - strand, within EX31_RS05140 at 164.680 kb on + strand, within EX31_RS05140 at 164.746 kb on + strand, within EX31_RS05140 at 164.746 kb on + strand, within EX31_RS05140 at 164.747 kb on - strand, within EX31_RS05140 at 164.777 kb on + strand, within EX31_RS05140 at 164.778 kb on - strand, within EX31_RS05140 at 164.861 kb on - strand, within EX31_RS05140 at 165.026 kb on + strand, within EX31_RS05140 at 165.026 kb on + strand, within EX31_RS05140 at 165.026 kb on + strand, within EX31_RS05140 at 165.026 kb on + strand, within EX31_RS05140 at 165.027 kb on - strand, within EX31_RS05140 at 165.027 kb on - strand, within EX31_RS05140 at 165.027 kb on - strand, within EX31_RS05140 at 165.027 kb on - strand, within EX31_RS05140 at 165.027 kb on - strand, within EX31_RS05140 at 165.099 kb on + strand, within EX31_RS05140 at 165.145 kb on - strand, within EX31_RS05140 at 165.145 kb on - strand, within EX31_RS05140 at 165.162 kb on + strand, within EX31_RS05140 at 165.162 kb on + strand, within EX31_RS05140 at 165.308 kb on + strand at 165.308 kb on + strand at 165.308 kb on + strand at 165.308 kb on + strand at 165.308 kb on + strand at 165.309 kb on - strand at 165.309 kb on - strand at 165.309 kb on - strand at 165.358 kb on + strand at 165.359 kb on - strand at 165.359 kb on - strand at 165.359 kb on - strand at 165.365 kb on + strand at 165.365 kb on + strand at 165.366 kb on - strand at 165.366 kb on - strand at 165.366 kb on - strand at 165.370 kb on - strand at 165.384 kb on + strand at 165.410 kb on + strand at 165.428 kb on + strand at 165.428 kb on + strand at 165.429 kb on - strand at 165.462 kb on + strand at 165.467 kb on - strand at 165.467 kb on - strand at 165.498 kb on + strand at 165.498 kb on + strand at 165.600 kb on + strand at 165.601 kb on - strand at 165.601 kb on - strand at 165.623 kb on + strand at 165.639 kb on + strand at 165.639 kb on + strand at 165.639 kb on + strand at 165.639 kb on + strand at 165.639 kb on + strand at 165.640 kb on - strand at 165.640 kb on - strand at 165.640 kb on - strand at 165.650 kb on + strand at 165.650 kb on + strand at 165.650 kb on + strand at 165.650 kb on + strand at 165.650 kb on + strand at 165.650 kb on + strand at 165.650 kb on + strand at 165.651 kb on - strand at 165.651 kb on - strand at 165.651 kb on - strand at 165.651 kb on - strand at 165.699 kb on - strand at 165.715 kb on + strand at 165.715 kb on + strand at 165.715 kb on + strand at 165.715 kb on + strand at 165.715 kb on + strand at 165.715 kb on + strand at 165.715 kb on + strand at 165.716 kb on - strand at 165.716 kb on - strand at 165.716 kb on - strand at 165.727 kb on - strand at 165.742 kb on - strand at 165.769 kb on + strand at 165.769 kb on + strand at 165.769 kb on + strand at 165.769 kb on + strand at 165.769 kb on + strand at 165.769 kb on + strand at 165.769 kb on + strand at 165.769 kb on + strand at 165.770 kb on - strand at 165.770 kb on - strand at 165.770 kb on - strand at 165.770 kb on - strand at 165.815 kb on + strand, within EX31_RS05145 at 165.816 kb on - strand, within EX31_RS05145 at 165.819 kb on + strand, within EX31_RS05145 at 165.819 kb on + strand, within EX31_RS05145 at 165.820 kb on - strand, within EX31_RS05145 at 165.820 kb on - strand, within EX31_RS05145 at 165.860 kb on - strand, within EX31_RS05145 at 165.860 kb on - strand, within EX31_RS05145 at 165.936 kb on + strand, within EX31_RS05145 at 165.936 kb on + strand, within EX31_RS05145 at 165.936 kb on + strand, within EX31_RS05145 at 165.936 kb on + strand, within EX31_RS05145 at 165.936 kb on + strand, within EX31_RS05145 at 165.936 kb on + strand, within EX31_RS05145 at 165.937 kb on - strand, within EX31_RS05145 at 165.937 kb on - strand, within EX31_RS05145 at 165.937 kb on - strand, within EX31_RS05145 at 165.937 kb on - strand, within EX31_RS05145 at 165.941 kb on + strand, within EX31_RS05145 at 165.976 kb on + strand, within EX31_RS05145 at 165.977 kb on - strand, within EX31_RS05145 at 166.049 kb on + strand, within EX31_RS05145 at 166.080 kb on - strand, within EX31_RS05145 at 166.101 kb on + strand, within EX31_RS05145 at 166.119 kb on + strand, within EX31_RS05145 at 166.119 kb on + strand, within EX31_RS05145 at 166.120 kb on - strand, within EX31_RS05145 at 166.120 kb on - strand, within EX31_RS05145 at 166.272 kb on + strand, within EX31_RS05145 at 166.272 kb on + strand, within EX31_RS05145 at 166.273 kb on - strand, within EX31_RS05145
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 163,303 + EX31_RS05130 0.80 +0.1 163,304 - EX31_RS05130 0.80 -0.2 163,647 - +0.3 163,657 + -2.5 163,658 - +0.9 163,677 + -0.0 163,698 + +0.3 163,730 + EX31_RS05135 0.17 -0.4 163,801 + EX31_RS05135 0.40 -0.2 163,801 + EX31_RS05135 0.40 +0.3 163,802 - EX31_RS05135 0.40 +0.1 163,802 - EX31_RS05135 0.40 +0.2 163,802 - EX31_RS05135 0.40 -0.2 163,802 - EX31_RS05135 0.40 +0.8 163,806 + EX31_RS05135 0.41 -0.1 163,806 + EX31_RS05135 0.41 +0.3 163,806 + EX31_RS05135 0.41 -0.6 163,806 + EX31_RS05135 0.41 -0.5 163,806 + EX31_RS05135 0.41 -0.2 163,807 - EX31_RS05135 0.42 +0.0 163,807 - EX31_RS05135 0.42 -1.2 163,807 - EX31_RS05135 0.42 +0.7 163,807 - EX31_RS05135 0.42 +0.2 163,807 - EX31_RS05135 0.42 -0.1 163,809 + EX31_RS05135 0.42 +0.1 163,809 + EX31_RS05135 0.42 -0.4 163,809 + EX31_RS05135 0.42 +0.1 163,809 + EX31_RS05135 0.42 -0.2 163,809 + EX31_RS05135 0.42 -1.0 163,809 + EX31_RS05135 0.42 -0.3 163,809 + EX31_RS05135 0.42 -0.3 163,810 - EX31_RS05135 0.43 -0.9 163,863 + EX31_RS05135 0.60 +0.3 163,863 + EX31_RS05135 0.60 +0.4 163,864 - EX31_RS05135 0.60 -0.1 163,879 + EX31_RS05135 0.65 +1.9 163,879 + EX31_RS05135 0.65 -1.1 163,879 + EX31_RS05135 0.65 -0.9 163,879 + EX31_RS05135 0.65 -1.9 163,879 + EX31_RS05135 0.65 -0.9 163,880 - EX31_RS05135 0.65 -1.4 163,880 - EX31_RS05135 0.65 +0.2 163,880 - EX31_RS05135 0.65 +0.4 163,896 + EX31_RS05135 0.71 +0.3 163,896 + EX31_RS05135 0.71 -0.4 163,896 + EX31_RS05135 0.71 +0.3 163,896 + EX31_RS05135 0.71 +0.8 163,896 + EX31_RS05135 0.71 +0.5 163,897 - EX31_RS05135 0.71 +0.9 163,900 - EX31_RS05135 0.72 +1.7 163,900 - EX31_RS05135 0.72 +0.6 163,906 + EX31_RS05135 0.74 +0.6 163,906 + EX31_RS05135 0.74 +0.1 163,906 + EX31_RS05135 0.74 -0.1 163,906 + EX31_RS05135 0.74 -0.3 163,906 + EX31_RS05135 0.74 -0.4 163,906 + EX31_RS05135 0.74 +0.3 163,907 - EX31_RS05135 0.74 -0.9 163,907 - EX31_RS05135 0.74 -3.1 163,907 - EX31_RS05135 0.74 +0.9 163,907 - EX31_RS05135 0.74 +0.4 163,907 - EX31_RS05135 0.74 -0.1 163,907 - EX31_RS05135 0.74 +1.5 163,907 - EX31_RS05135 0.74 +0.4 163,909 + EX31_RS05135 0.75 +0.5 163,909 + EX31_RS05135 0.75 -0.3 163,910 - EX31_RS05135 0.75 -0.5 163,910 - EX31_RS05135 0.75 +0.3 163,925 + EX31_RS05135 0.80 -0.2 163,926 - EX31_RS05135 0.80 +0.1 163,926 - EX31_RS05135 0.80 -0.2 163,926 - EX31_RS05135 0.80 -0.4 163,929 + EX31_RS05135 0.81 +0.1 163,929 + EX31_RS05135 0.81 +0.6 163,929 + EX31_RS05135 0.81 -0.7 164,004 + +0.3 164,004 + +0.8 164,031 + -1.3 164,076 - +0.5 164,076 - -1.4 164,117 + +0.8 164,117 + -1.2 164,117 + +0.8 164,117 + -0.7 164,117 + -1.3 164,118 - +1.0 164,118 - +0.5 164,118 - +1.6 164,118 - +0.4 164,118 - +0.7 164,118 - -1.0 164,121 + +0.2 164,121 + -0.2 164,121 + -0.4 164,122 - -1.1 164,127 + +0.6 164,127 + +0.7 164,127 + +0.2 164,128 - +0.0 164,128 - +0.2 164,128 - +0.1 164,241 + -0.1 164,241 + +0.4 164,241 + -0.3 164,241 + +0.2 164,241 + +0.8 164,241 + +0.9 164,242 - -0.5 164,282 + EX31_RS05140 0.13 -1.0 164,282 + EX31_RS05140 0.13 +0.4 164,282 + EX31_RS05140 0.13 +0.4 164,283 - EX31_RS05140 0.13 -1.8 164,283 - EX31_RS05140 0.13 -0.5 164,283 - EX31_RS05140 0.13 -0.1 164,351 + EX31_RS05140 0.19 +0.3 164,351 + EX31_RS05140 0.19 +0.1 164,351 + EX31_RS05140 0.19 -0.1 164,592 + EX31_RS05140 0.39 -0.1 164,600 + EX31_RS05140 0.39 -0.4 164,606 + EX31_RS05140 0.40 -1.2 164,607 - EX31_RS05140 0.40 -0.9 164,607 - EX31_RS05140 0.40 +1.0 164,639 - EX31_RS05140 0.43 +0.8 164,680 + EX31_RS05140 0.46 +1.4 164,746 + EX31_RS05140 0.52 +0.7 164,746 + EX31_RS05140 0.52 -0.2 164,747 - EX31_RS05140 0.52 -0.4 164,777 + EX31_RS05140 0.54 -0.2 164,778 - EX31_RS05140 0.54 +0.7 164,861 - EX31_RS05140 0.61 +0.6 165,026 + EX31_RS05140 0.75 -0.8 165,026 + EX31_RS05140 0.75 -0.0 165,026 + EX31_RS05140 0.75 +0.6 165,026 + EX31_RS05140 0.75 -0.2 165,027 - EX31_RS05140 0.75 -0.8 165,027 - EX31_RS05140 0.75 +0.6 165,027 - EX31_RS05140 0.75 -0.7 165,027 - EX31_RS05140 0.75 -0.2 165,027 - EX31_RS05140 0.75 -0.2 165,099 + EX31_RS05140 0.81 -0.5 165,145 - EX31_RS05140 0.85 -0.4 165,145 - EX31_RS05140 0.85 +0.5 165,162 + EX31_RS05140 0.86 +0.4 165,162 + EX31_RS05140 0.86 -0.6 165,308 + -0.2 165,308 + -0.4 165,308 + -0.3 165,308 + +0.1 165,308 + +0.5 165,309 - +0.2 165,309 - +0.5 165,309 - -0.9 165,358 + -0.5 165,359 - -0.8 165,359 - -0.2 165,359 - -1.2 165,365 + -0.6 165,365 + +0.3 165,366 - +0.1 165,366 - +0.4 165,366 - -0.3 165,370 - +0.3 165,384 + +1.0 165,410 + +1.0 165,428 + +0.8 165,428 + +0.3 165,429 - -0.9 165,462 + +0.6 165,467 - +0.0 165,467 - +0.1 165,498 + -0.0 165,498 + -0.7 165,600 + +0.3 165,601 - -1.1 165,601 - -0.5 165,623 + -0.1 165,639 + +0.2 165,639 + +0.6 165,639 + -2.0 165,639 + -1.9 165,639 + -0.2 165,640 - +0.1 165,640 - +0.8 165,640 - +0.0 165,650 + -1.0 165,650 + -0.5 165,650 + +0.4 165,650 + +1.3 165,650 + -1.9 165,650 + +1.4 165,650 + -0.3 165,651 - +1.3 165,651 - +1.0 165,651 - +0.4 165,651 - +0.8 165,699 - +0.4 165,715 + +0.1 165,715 + -0.3 165,715 + -0.0 165,715 + -0.2 165,715 + +0.8 165,715 + -0.1 165,715 + +0.4 165,716 - +0.1 165,716 - +0.7 165,716 - -0.1 165,727 - +0.1 165,742 - +0.2 165,769 + +0.4 165,769 + +0.5 165,769 + -0.4 165,769 + -1.7 165,769 + +0.1 165,769 + -1.6 165,769 + +2.0 165,769 + +0.8 165,770 - +0.4 165,770 - +0.1 165,770 - -0.3 165,770 - -0.5 165,815 + EX31_RS05145 0.12 -0.0 165,816 - EX31_RS05145 0.12 -0.6 165,819 + EX31_RS05145 0.12 +1.0 165,819 + EX31_RS05145 0.12 -1.0 165,820 - EX31_RS05145 0.12 +1.1 165,820 - EX31_RS05145 0.12 +0.2 165,860 - EX31_RS05145 0.15 +0.2 165,860 - EX31_RS05145 0.15 +0.3 165,936 + EX31_RS05145 0.20 +0.3 165,936 + EX31_RS05145 0.20 +1.8 165,936 + EX31_RS05145 0.20 +0.4 165,936 + EX31_RS05145 0.20 -0.0 165,936 + EX31_RS05145 0.20 -1.0 165,936 + EX31_RS05145 0.20 -0.1 165,937 - EX31_RS05145 0.20 -0.7 165,937 - EX31_RS05145 0.20 +0.4 165,937 - EX31_RS05145 0.20 +1.7 165,937 - EX31_RS05145 0.20 -1.7 165,941 + EX31_RS05145 0.20 +1.1 165,976 + EX31_RS05145 0.22 -1.0 165,977 - EX31_RS05145 0.22 +0.9 166,049 + EX31_RS05145 0.27 -0.3 166,080 - EX31_RS05145 0.29 -0.3 166,101 + EX31_RS05145 0.31 +0.5 166,119 + EX31_RS05145 0.32 +0.5 166,119 + EX31_RS05145 0.32 -0.3 166,120 - EX31_RS05145 0.32 -0.5 166,120 - EX31_RS05145 0.32 -0.3 166,272 + EX31_RS05145 0.42 -1.5 166,272 + EX31_RS05145 0.42 +1.1 166,273 - EX31_RS05145 0.42 +0.5
Or see this region's nucleotide sequence