Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS04305 and EX31_RS25730 are separated by 220 nucleotides EX31_RS25730 and EX31_RS04315 are separated by 25 nucleotides EX31_RS04315 and EX31_RS04320 are separated by 47 nucleotides EX31_RS04320 and EX31_RS04325 are separated by 121 nucleotides EX31_RS04325 and EX31_RS04330 are separated by 16 nucleotides
EX31_RS04305: EX31_RS04305 - relaxase/mobilization nuclease domain-containing protein, at 390,873 to 392,132
_RS04305
EX31_RS25730: EX31_RS25730 - DUF4755 domain-containing protein, at 392,353 to 392,994
_RS25730
EX31_RS04315: EX31_RS04315 - hypothetical protein, at 393,020 to 393,409
_RS04315
EX31_RS04320: EX31_RS04320 - hypothetical protein, at 393,457 to 393,879
_RS04320
EX31_RS04325: EX31_RS04325 - hypothetical protein, at 394,001 to 394,390
_RS04325
EX31_RS04330: EX31_RS04330 - DNA-binding protein, at 394,407 to 396,275
_RS04330
Position (kb) 393
394 Strain fitness (log2 ratio) -2
-1
0
1 at 392.036 kb on - strand at 392.055 kb on - strand at 392.080 kb on + strand at 392.080 kb on + strand at 392.080 kb on + strand at 392.081 kb on - strand at 392.081 kb on - strand at 392.092 kb on + strand at 392.092 kb on + strand at 392.093 kb on - strand at 392.093 kb on - strand at 392.093 kb on - strand at 392.093 kb on - strand at 392.093 kb on - strand at 392.118 kb on - strand at 392.150 kb on - strand at 392.256 kb on + strand at 392.257 kb on - strand at 392.291 kb on + strand at 392.291 kb on + strand at 392.292 kb on - strand at 392.292 kb on - strand at 392.292 kb on - strand at 392.324 kb on - strand at 392.324 kb on - strand at 392.345 kb on + strand at 392.435 kb on + strand, within EX31_RS25730 at 392.435 kb on + strand, within EX31_RS25730 at 392.436 kb on - strand, within EX31_RS25730 at 392.441 kb on + strand, within EX31_RS25730 at 392.441 kb on + strand, within EX31_RS25730 at 392.441 kb on + strand, within EX31_RS25730 at 392.441 kb on + strand, within EX31_RS25730 at 392.441 kb on + strand, within EX31_RS25730 at 392.441 kb on + strand, within EX31_RS25730 at 392.442 kb on - strand, within EX31_RS25730 at 392.453 kb on + strand, within EX31_RS25730 at 392.456 kb on + strand, within EX31_RS25730 at 392.456 kb on + strand, within EX31_RS25730 at 392.457 kb on - strand, within EX31_RS25730 at 392.457 kb on - strand, within EX31_RS25730 at 392.457 kb on - strand, within EX31_RS25730 at 392.459 kb on + strand, within EX31_RS25730 at 392.460 kb on - strand, within EX31_RS25730 at 392.617 kb on + strand, within EX31_RS25730 at 392.618 kb on - strand, within EX31_RS25730 at 392.702 kb on - strand, within EX31_RS25730 at 392.738 kb on + strand, within EX31_RS25730 at 393.035 kb on - strand at 393.154 kb on + strand, within EX31_RS04315 at 393.202 kb on + strand, within EX31_RS04315 at 393.202 kb on + strand, within EX31_RS04315 at 393.224 kb on + strand, within EX31_RS04315 at 393.235 kb on + strand, within EX31_RS04315 at 393.274 kb on + strand, within EX31_RS04315 at 393.284 kb on - strand, within EX31_RS04315 at 393.351 kb on + strand, within EX31_RS04315 at 393.403 kb on + strand at 393.404 kb on - strand at 393.483 kb on + strand at 393.484 kb on - strand at 393.535 kb on + strand, within EX31_RS04320 at 393.598 kb on - strand, within EX31_RS04320 at 393.604 kb on + strand, within EX31_RS04320 at 393.827 kb on - strand, within EX31_RS04320 at 393.880 kb on - strand at 393.924 kb on - strand at 393.933 kb on - strand at 394.220 kb on + strand, within EX31_RS04325
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 392,036 - +0.4 392,055 - -0.6 392,080 + +0.6 392,080 + +1.1 392,080 + -0.8 392,081 - -1.6 392,081 - +0.7 392,092 + +0.7 392,092 + +0.7 392,093 - +0.0 392,093 - +0.5 392,093 - -0.2 392,093 - -0.6 392,093 - -0.6 392,118 - +0.1 392,150 - -0.0 392,256 + +0.7 392,257 - +1.0 392,291 + +0.5 392,291 + -1.7 392,292 - +0.6 392,292 - -0.8 392,292 - +0.3 392,324 - +0.6 392,324 - +0.3 392,345 + -0.3 392,435 + EX31_RS25730 0.13 -0.4 392,435 + EX31_RS25730 0.13 +0.3 392,436 - EX31_RS25730 0.13 +0.3 392,441 + EX31_RS25730 0.14 -0.2 392,441 + EX31_RS25730 0.14 +0.6 392,441 + EX31_RS25730 0.14 -1.1 392,441 + EX31_RS25730 0.14 +0.1 392,441 + EX31_RS25730 0.14 +0.7 392,441 + EX31_RS25730 0.14 +0.7 392,442 - EX31_RS25730 0.14 +0.4 392,453 + EX31_RS25730 0.16 +0.7 392,456 + EX31_RS25730 0.16 +1.2 392,456 + EX31_RS25730 0.16 -1.2 392,457 - EX31_RS25730 0.16 -0.1 392,457 - EX31_RS25730 0.16 -2.3 392,457 - EX31_RS25730 0.16 +0.3 392,459 + EX31_RS25730 0.17 +0.5 392,460 - EX31_RS25730 0.17 -0.0 392,617 + EX31_RS25730 0.41 +0.7 392,618 - EX31_RS25730 0.41 -0.4 392,702 - EX31_RS25730 0.54 +1.1 392,738 + EX31_RS25730 0.60 +0.3 393,035 - -0.3 393,154 + EX31_RS04315 0.34 -0.2 393,202 + EX31_RS04315 0.47 +1.1 393,202 + EX31_RS04315 0.47 +0.8 393,224 + EX31_RS04315 0.52 -1.3 393,235 + EX31_RS04315 0.55 +0.3 393,274 + EX31_RS04315 0.65 +0.9 393,284 - EX31_RS04315 0.68 +0.8 393,351 + EX31_RS04315 0.85 -2.0 393,403 + -0.8 393,404 - +0.6 393,483 + +0.7 393,484 - +0.4 393,535 + EX31_RS04320 0.18 +1.4 393,598 - EX31_RS04320 0.33 -0.1 393,604 + EX31_RS04320 0.35 -2.1 393,827 - EX31_RS04320 0.87 -0.5 393,880 - -1.0 393,924 - -0.2 393,933 - +0.6 394,220 + EX31_RS04325 0.56 +0.3
Or see this region's nucleotide sequence