Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS03540 and EX31_RS03545 are separated by 25 nucleotides EX31_RS03545 and EX31_RS03550 are separated by 9 nucleotides EX31_RS03550 and EX31_RS03555 are separated by 69 nucleotides EX31_RS03555 and EX31_RS03560 are separated by 114 nucleotides
EX31_RS03540: EX31_RS03540 - dephospho-CoA kinase, at 203,233 to 203,829
_RS03540
EX31_RS03545: EX31_RS03545 - cell division protein ZapD, at 203,855 to 204,607
_RS03545
EX31_RS03550: EX31_RS03550 - DNA gyrase inhibitor YacG, at 204,617 to 204,814
_RS03550
EX31_RS03555: EX31_RS03555 - 8-oxo-dGTP diphosphatase MutT, at 204,884 to 205,285
_RS03555
EX31_RS03560: EX31_RS03560 - preprotein translocase subunit SecA, at 205,400 to 208,117
_RS03560
Position (kb) 204
205 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 203.798 kb on + strand at 203.798 kb on + strand at 203.798 kb on + strand at 203.798 kb on + strand at 203.798 kb on + strand at 203.798 kb on + strand at 203.798 kb on + strand at 203.798 kb on + strand at 203.799 kb on - strand at 203.799 kb on - strand at 203.865 kb on + strand at 203.865 kb on + strand at 203.865 kb on + strand at 203.865 kb on + strand at 203.865 kb on + strand at 203.865 kb on + strand at 203.865 kb on + strand at 203.865 kb on + strand at 203.866 kb on - strand at 203.866 kb on - strand at 203.866 kb on - strand at 203.866 kb on - strand at 203.866 kb on - strand at 203.866 kb on - strand at 203.866 kb on - strand at 203.866 kb on - strand at 204.012 kb on + strand, within EX31_RS03545 at 204.013 kb on - strand, within EX31_RS03545 at 204.117 kb on + strand, within EX31_RS03545 at 204.117 kb on + strand, within EX31_RS03545 at 204.118 kb on - strand, within EX31_RS03545 at 204.118 kb on - strand, within EX31_RS03545 at 204.148 kb on + strand, within EX31_RS03545 at 204.148 kb on + strand, within EX31_RS03545 at 204.283 kb on + strand, within EX31_RS03545 at 204.358 kb on + strand, within EX31_RS03545 at 204.375 kb on + strand, within EX31_RS03545 at 204.375 kb on + strand, within EX31_RS03545 at 204.375 kb on + strand, within EX31_RS03545 at 204.376 kb on - strand, within EX31_RS03545 at 204.507 kb on + strand, within EX31_RS03545 at 204.507 kb on + strand, within EX31_RS03545 at 204.507 kb on + strand, within EX31_RS03545 at 204.507 kb on + strand, within EX31_RS03545 at 204.508 kb on - strand, within EX31_RS03545 at 204.517 kb on + strand, within EX31_RS03545 at 204.517 kb on + strand, within EX31_RS03545 at 204.605 kb on + strand at 204.639 kb on + strand, within EX31_RS03550 at 204.639 kb on + strand, within EX31_RS03550 at 204.640 kb on - strand, within EX31_RS03550 at 204.721 kb on + strand, within EX31_RS03550 at 204.722 kb on - strand, within EX31_RS03550 at 204.766 kb on + strand, within EX31_RS03550 at 204.766 kb on + strand, within EX31_RS03550 at 204.766 kb on + strand, within EX31_RS03550 at 204.767 kb on - strand, within EX31_RS03550 at 204.812 kb on + strand at 204.812 kb on + strand at 204.812 kb on + strand at 204.828 kb on + strand at 204.830 kb on + strand at 204.830 kb on + strand at 204.858 kb on + strand at 204.858 kb on + strand at 204.858 kb on + strand at 204.859 kb on - strand at 204.859 kb on - strand at 204.859 kb on - strand at 204.860 kb on + strand at 204.860 kb on + strand at 204.860 kb on + strand at 204.882 kb on - strand at 204.889 kb on - strand at 204.996 kb on + strand, within EX31_RS03555 at 204.997 kb on - strand, within EX31_RS03555 at 205.039 kb on + strand, within EX31_RS03555 at 205.039 kb on + strand, within EX31_RS03555 at 205.040 kb on - strand, within EX31_RS03555 at 205.040 kb on - strand, within EX31_RS03555 at 205.040 kb on - strand, within EX31_RS03555 at 205.040 kb on - strand, within EX31_RS03555 at 205.040 kb on - strand, within EX31_RS03555 at 205.040 kb on - strand, within EX31_RS03555 at 205.040 kb on - strand, within EX31_RS03555 at 205.040 kb on - strand, within EX31_RS03555 at 205.040 kb on - strand, within EX31_RS03555 at 205.040 kb on - strand, within EX31_RS03555 at 205.094 kb on - strand, within EX31_RS03555 at 205.094 kb on - strand, within EX31_RS03555 at 205.119 kb on - strand, within EX31_RS03555 at 205.119 kb on - strand, within EX31_RS03555 at 205.129 kb on + strand, within EX31_RS03555 at 205.195 kb on + strand, within EX31_RS03555 at 205.196 kb on - strand, within EX31_RS03555 at 205.196 kb on - strand, within EX31_RS03555 at 205.267 kb on + strand at 205.268 kb on - strand at 205.297 kb on - strand at 205.346 kb on - strand at 205.359 kb on - strand at 205.376 kb on - strand at 205.402 kb on - strand at 205.432 kb on - strand at 205.544 kb on - strand at 205.618 kb on + strand at 205.619 kb on - strand at 205.619 kb on - strand at 205.619 kb on - strand at 205.637 kb on + strand at 205.638 kb on - strand at 205.638 kb on - strand at 205.638 kb on - strand at 205.641 kb on - strand at 205.641 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 203,798 + -0.8 203,798 + -0.2 203,798 + +0.7 203,798 + +1.0 203,798 + +0.8 203,798 + +1.1 203,798 + +1.3 203,798 + -0.3 203,799 - -0.3 203,799 - -0.3 203,865 + +0.7 203,865 + -0.4 203,865 + +0.8 203,865 + +0.2 203,865 + +1.1 203,865 + -0.5 203,865 + -0.0 203,865 + +0.4 203,866 - -0.6 203,866 - -0.0 203,866 - -0.1 203,866 - +1.1 203,866 - -0.0 203,866 - -1.8 203,866 - -0.5 203,866 - -0.3 204,012 + EX31_RS03545 0.21 -0.0 204,013 - EX31_RS03545 0.21 -0.3 204,117 + EX31_RS03545 0.35 -0.5 204,117 + EX31_RS03545 0.35 -0.0 204,118 - EX31_RS03545 0.35 -0.0 204,118 - EX31_RS03545 0.35 +0.4 204,148 + EX31_RS03545 0.39 +0.4 204,148 + EX31_RS03545 0.39 -0.4 204,283 + EX31_RS03545 0.57 +0.3 204,358 + EX31_RS03545 0.67 +0.1 204,375 + EX31_RS03545 0.69 +0.5 204,375 + EX31_RS03545 0.69 +1.0 204,375 + EX31_RS03545 0.69 -0.7 204,376 - EX31_RS03545 0.69 +0.9 204,507 + EX31_RS03545 0.87 -0.1 204,507 + EX31_RS03545 0.87 -0.5 204,507 + EX31_RS03545 0.87 -0.4 204,507 + EX31_RS03545 0.87 +0.4 204,508 - EX31_RS03545 0.87 +0.5 204,517 + EX31_RS03545 0.88 +0.7 204,517 + EX31_RS03545 0.88 +0.3 204,605 + -1.0 204,639 + EX31_RS03550 0.11 +0.9 204,639 + EX31_RS03550 0.11 +0.0 204,640 - EX31_RS03550 0.12 -1.9 204,721 + EX31_RS03550 0.53 -1.0 204,722 - EX31_RS03550 0.53 +1.6 204,766 + EX31_RS03550 0.75 +1.2 204,766 + EX31_RS03550 0.75 +0.5 204,766 + EX31_RS03550 0.75 -0.9 204,767 - EX31_RS03550 0.76 +1.3 204,812 + +0.6 204,812 + +0.6 204,812 + -0.1 204,828 + +0.3 204,830 + +0.1 204,830 + +0.2 204,858 + +0.1 204,858 + -0.8 204,858 + +1.4 204,859 - +0.3 204,859 - -0.6 204,859 - -2.0 204,860 + -0.8 204,860 + -1.6 204,860 + +0.0 204,882 - -0.1 204,889 - -1.0 204,996 + EX31_RS03555 0.28 -0.4 204,997 - EX31_RS03555 0.28 -0.9 205,039 + EX31_RS03555 0.39 -2.8 205,039 + EX31_RS03555 0.39 +0.8 205,040 - EX31_RS03555 0.39 +0.1 205,040 - EX31_RS03555 0.39 -0.1 205,040 - EX31_RS03555 0.39 -0.1 205,040 - EX31_RS03555 0.39 -0.0 205,040 - EX31_RS03555 0.39 -0.2 205,040 - EX31_RS03555 0.39 +1.0 205,040 - EX31_RS03555 0.39 +0.2 205,040 - EX31_RS03555 0.39 +0.1 205,040 - EX31_RS03555 0.39 +0.4 205,040 - EX31_RS03555 0.39 -0.3 205,094 - EX31_RS03555 0.52 -0.4 205,094 - EX31_RS03555 0.52 -0.4 205,119 - EX31_RS03555 0.58 +0.8 205,119 - EX31_RS03555 0.58 -1.1 205,129 + EX31_RS03555 0.61 -0.6 205,195 + EX31_RS03555 0.77 +0.0 205,196 - EX31_RS03555 0.78 +0.5 205,196 - EX31_RS03555 0.78 -1.3 205,267 + +0.9 205,268 - -0.9 205,297 - -0.1 205,346 - +0.2 205,359 - +0.4 205,376 - +0.5 205,402 - +0.1 205,432 - -0.4 205,544 - +1.5 205,618 + +0.4 205,619 - -2.1 205,619 - +0.2 205,619 - -0.4 205,637 + +2.6 205,638 - -0.0 205,638 - -0.7 205,638 - +0.1 205,641 - +1.0 205,641 - +1.2
Or see this region's nucleotide sequence