Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS01480 and EX31_RS01485 are separated by 396 nucleotides EX31_RS01485 and EX31_RS01490 are separated by 413 nucleotides
EX31_RS01480: EX31_RS01480 - 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD, at 332,772 to 333,533
_RS01480
EX31_RS01485: EX31_RS01485 - helix-turn-helix domain-containing protein, at 333,930 to 334,286
_RS01485
EX31_RS01490: EX31_RS01490 - efflux RND transporter periplasmic adaptor subunit, at 334,700 to 335,866
_RS01490
Position (kb) 333
334
335 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 332.963 kb on + strand, within EX31_RS01480 at 332.964 kb on - strand, within EX31_RS01480 at 332.965 kb on + strand, within EX31_RS01480 at 332.966 kb on - strand, within EX31_RS01480 at 332.966 kb on - strand, within EX31_RS01480 at 332.966 kb on - strand, within EX31_RS01480 at 332.966 kb on - strand, within EX31_RS01480 at 333.060 kb on - strand, within EX31_RS01480 at 333.061 kb on + strand, within EX31_RS01480 at 333.062 kb on - strand, within EX31_RS01480 at 333.468 kb on + strand at 333.545 kb on + strand at 333.551 kb on + strand at 333.551 kb on + strand at 333.551 kb on + strand at 333.551 kb on + strand at 333.551 kb on + strand at 333.551 kb on + strand at 333.551 kb on + strand at 333.551 kb on + strand at 333.552 kb on - strand at 333.552 kb on - strand at 333.552 kb on - strand at 333.552 kb on - strand at 333.584 kb on + strand at 333.584 kb on + strand at 333.584 kb on + strand at 333.584 kb on + strand at 333.585 kb on - strand at 333.585 kb on - strand at 333.620 kb on - strand at 333.636 kb on + strand at 333.761 kb on + strand at 333.837 kb on + strand at 333.915 kb on - strand at 334.071 kb on - strand, within EX31_RS01485 at 334.071 kb on - strand, within EX31_RS01485 at 334.161 kb on - strand, within EX31_RS01485 at 334.166 kb on + strand, within EX31_RS01485 at 334.166 kb on + strand, within EX31_RS01485 at 334.167 kb on - strand, within EX31_RS01485 at 334.167 kb on - strand, within EX31_RS01485 at 334.214 kb on + strand, within EX31_RS01485 at 334.425 kb on - strand at 334.425 kb on - strand at 334.425 kb on - strand at 334.435 kb on + strand at 334.441 kb on - strand at 334.489 kb on + strand at 334.490 kb on - strand at 334.490 kb on - strand at 334.605 kb on + strand at 334.618 kb on + strand at 334.619 kb on - strand at 334.619 kb on - strand at 334.623 kb on - strand at 334.641 kb on + strand at 334.867 kb on - strand, within EX31_RS01490 at 334.902 kb on - strand, within EX31_RS01490 at 334.920 kb on - strand, within EX31_RS01490 at 335.262 kb on + strand, within EX31_RS01490 at 335.263 kb on - strand, within EX31_RS01490 at 335.286 kb on + strand, within EX31_RS01490 at 335.286 kb on + strand, within EX31_RS01490
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 332,963 + EX31_RS01480 0.25 -0.2 332,964 - EX31_RS01480 0.25 +1.2 332,965 + EX31_RS01480 0.25 -1.9 332,966 - EX31_RS01480 0.25 -2.1 332,966 - EX31_RS01480 0.25 +0.2 332,966 - EX31_RS01480 0.25 +1.0 332,966 - EX31_RS01480 0.25 +0.2 333,060 - EX31_RS01480 0.38 +0.9 333,061 + EX31_RS01480 0.38 +0.5 333,062 - EX31_RS01480 0.38 -0.1 333,468 + +0.0 333,545 + +1.3 333,551 + +0.2 333,551 + +0.8 333,551 + -1.1 333,551 + +0.1 333,551 + -1.4 333,551 + +2.0 333,551 + +0.7 333,551 + -3.9 333,552 - +0.6 333,552 - +0.4 333,552 - +0.7 333,552 - -0.2 333,584 + -0.1 333,584 + -0.4 333,584 + -0.7 333,584 + +0.8 333,585 - +0.8 333,585 - +0.6 333,620 - +0.3 333,636 + +0.8 333,761 + -1.8 333,837 + +0.3 333,915 - +0.5 334,071 - EX31_RS01485 0.39 +1.6 334,071 - EX31_RS01485 0.39 -2.0 334,161 - EX31_RS01485 0.65 -0.1 334,166 + EX31_RS01485 0.66 -0.5 334,166 + EX31_RS01485 0.66 -0.7 334,167 - EX31_RS01485 0.66 +0.0 334,167 - EX31_RS01485 0.66 -1.3 334,214 + EX31_RS01485 0.80 -1.1 334,425 - +0.2 334,425 - +0.1 334,425 - -0.2 334,435 + -0.9 334,441 - -0.3 334,489 + +0.2 334,490 - -0.5 334,490 - +0.0 334,605 + +0.5 334,618 + -1.0 334,619 - +0.8 334,619 - +0.3 334,623 - +0.4 334,641 + -1.1 334,867 - EX31_RS01490 0.14 -0.1 334,902 - EX31_RS01490 0.17 -0.2 334,920 - EX31_RS01490 0.19 -0.3 335,262 + EX31_RS01490 0.48 -0.4 335,263 - EX31_RS01490 0.48 +0.6 335,286 + EX31_RS01490 0.50 +0.8 335,286 + EX31_RS01490 0.50 +0.8
Or see this region's nucleotide sequence