Strain Fitness in Rahnella sp. WP5 around EX31_RS01415

Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS01410 and EX31_RS01415 are separated by 4 nucleotidesEX31_RS01415 and EX31_RS01420 overlap by 4 nucleotides EX31_RS01410: EX31_RS01410 - hypothetical protein, at 313,814 to 315,163 _RS01410 EX31_RS01415: EX31_RS01415 - virulence factor SrfB, at 315,168 to 318,140 _RS01415 EX31_RS01420: EX31_RS01420 - virulence factor, at 318,137 to 320,512 _RS01420 Position (kb) 315 316 317 318 319Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 314.198 kb on + strand, within EX31_RS01410at 314.198 kb on + strand, within EX31_RS01410at 314.198 kb on + strand, within EX31_RS01410at 314.198 kb on + strand, within EX31_RS01410at 314.199 kb on - strand, within EX31_RS01410at 314.199 kb on - strand, within EX31_RS01410at 314.199 kb on - strand, within EX31_RS01410at 314.199 kb on - strand, within EX31_RS01410at 314.199 kb on - strand, within EX31_RS01410at 314.199 kb on - strand, within EX31_RS01410at 314.290 kb on + strand, within EX31_RS01410at 314.290 kb on + strand, within EX31_RS01410at 314.291 kb on - strand, within EX31_RS01410at 314.532 kb on + strand, within EX31_RS01410at 314.532 kb on + strand, within EX31_RS01410at 314.532 kb on + strand, within EX31_RS01410at 314.532 kb on + strand, within EX31_RS01410at 314.534 kb on + strand, within EX31_RS01410at 314.535 kb on - strand, within EX31_RS01410at 314.761 kb on - strand, within EX31_RS01410at 314.790 kb on + strand, within EX31_RS01410at 314.842 kb on + strand, within EX31_RS01410at 314.842 kb on + strand, within EX31_RS01410at 314.885 kb on - strand, within EX31_RS01410at 315.050 kb on + strandat 315.073 kb on + strandat 315.146 kb on - strandat 315.146 kb on - strandat 315.161 kb on + strandat 315.192 kb on - strandat 315.204 kb on - strandat 315.324 kb on + strandat 315.325 kb on - strandat 315.590 kb on - strand, within EX31_RS01415at 315.724 kb on + strand, within EX31_RS01415at 315.724 kb on + strand, within EX31_RS01415at 315.725 kb on - strand, within EX31_RS01415at 315.733 kb on + strand, within EX31_RS01415at 315.734 kb on - strand, within EX31_RS01415at 315.779 kb on + strand, within EX31_RS01415at 315.780 kb on - strand, within EX31_RS01415at 315.782 kb on + strand, within EX31_RS01415at 315.782 kb on + strand, within EX31_RS01415at 315.782 kb on + strand, within EX31_RS01415at 315.783 kb on - strand, within EX31_RS01415at 315.820 kb on - strand, within EX31_RS01415at 315.820 kb on - strand, within EX31_RS01415at 315.820 kb on - strand, within EX31_RS01415at 315.875 kb on + strand, within EX31_RS01415at 315.932 kb on + strand, within EX31_RS01415at 315.932 kb on + strand, within EX31_RS01415at 316.041 kb on + strand, within EX31_RS01415at 316.134 kb on - strand, within EX31_RS01415at 316.234 kb on - strand, within EX31_RS01415at 316.254 kb on + strand, within EX31_RS01415at 316.254 kb on + strand, within EX31_RS01415at 316.254 kb on + strand, within EX31_RS01415at 316.255 kb on - strand, within EX31_RS01415at 316.256 kb on + strand, within EX31_RS01415at 316.257 kb on - strand, within EX31_RS01415at 316.497 kb on - strand, within EX31_RS01415at 316.535 kb on + strand, within EX31_RS01415at 316.535 kb on + strand, within EX31_RS01415at 316.535 kb on + strand, within EX31_RS01415at 316.749 kb on + strand, within EX31_RS01415at 316.782 kb on - strand, within EX31_RS01415at 316.938 kb on - strand, within EX31_RS01415at 317.025 kb on - strand, within EX31_RS01415at 317.025 kb on - strand, within EX31_RS01415at 317.038 kb on + strand, within EX31_RS01415at 317.038 kb on + strand, within EX31_RS01415at 317.039 kb on - strand, within EX31_RS01415at 317.147 kb on + strand, within EX31_RS01415at 317.147 kb on + strand, within EX31_RS01415at 317.148 kb on - strand, within EX31_RS01415at 317.148 kb on - strand, within EX31_RS01415at 317.412 kb on - strand, within EX31_RS01415at 317.412 kb on - strand, within EX31_RS01415at 317.546 kb on + strand, within EX31_RS01415at 317.546 kb on + strand, within EX31_RS01415at 317.546 kb on + strand, within EX31_RS01415at 317.546 kb on + strand, within EX31_RS01415at 317.546 kb on + strand, within EX31_RS01415at 317.547 kb on - strand, within EX31_RS01415at 317.668 kb on + strand, within EX31_RS01415at 317.668 kb on + strand, within EX31_RS01415at 317.669 kb on - strand, within EX31_RS01415at 317.685 kb on + strand, within EX31_RS01415at 317.685 kb on + strand, within EX31_RS01415at 317.686 kb on - strand, within EX31_RS01415at 317.686 kb on - strand, within EX31_RS01415at 317.735 kb on + strand, within EX31_RS01415at 317.768 kb on + strand, within EX31_RS01415at 317.808 kb on + strand, within EX31_RS01415at 317.808 kb on + strand, within EX31_RS01415at 317.904 kb on + strandat 317.905 kb on - strandat 317.906 kb on + strandat 317.907 kb on - strandat 317.907 kb on - strandat 318.021 kb on - strandat 318.086 kb on + strandat 318.086 kb on + strandat 318.086 kb on + strandat 318.087 kb on - strandat 318.128 kb on - strandat 318.428 kb on + strand, within EX31_RS01420at 318.428 kb on + strand, within EX31_RS01420at 318.429 kb on - strand, within EX31_RS01420at 318.633 kb on - strand, within EX31_RS01420at 318.673 kb on + strand, within EX31_RS01420at 318.716 kb on - strand, within EX31_RS01420at 318.794 kb on + strand, within EX31_RS01420at 318.906 kb on - strand, within EX31_RS01420at 319.122 kb on + strand, within EX31_RS01420at 319.122 kb on + strand, within EX31_RS01420at 319.123 kb on - strand, within EX31_RS01420

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
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314,198 + EX31_RS01410 0.28 -0.3
314,198 + EX31_RS01410 0.28 -1.0
314,198 + EX31_RS01410 0.28 -0.4
314,198 + EX31_RS01410 0.28 +1.6
314,199 - EX31_RS01410 0.29 +1.0
314,199 - EX31_RS01410 0.29 +0.8
314,199 - EX31_RS01410 0.29 -2.1
314,199 - EX31_RS01410 0.29 -0.4
314,199 - EX31_RS01410 0.29 +0.4
314,199 - EX31_RS01410 0.29 -1.3
314,290 + EX31_RS01410 0.35 -1.2
314,290 + EX31_RS01410 0.35 -1.3
314,291 - EX31_RS01410 0.35 -3.6
314,532 + EX31_RS01410 0.53 -0.4
314,532 + EX31_RS01410 0.53 +0.9
314,532 + EX31_RS01410 0.53 +0.5
314,532 + EX31_RS01410 0.53 -1.0
314,534 + EX31_RS01410 0.53 +0.2
314,535 - EX31_RS01410 0.53 +1.5
314,761 - EX31_RS01410 0.70 -0.9
314,790 + EX31_RS01410 0.72 -0.8
314,842 + EX31_RS01410 0.76 +0.6
314,842 + EX31_RS01410 0.76 +0.8
314,885 - EX31_RS01410 0.79 +0.7
315,050 + -0.5
315,073 + -1.4
315,146 - +0.1
315,146 - +0.3
315,161 + +0.9
315,192 - -0.1
315,204 - -0.1
315,324 + +0.8
315,325 - +1.0
315,590 - EX31_RS01415 0.14 +0.2
315,724 + EX31_RS01415 0.19 +2.2
315,724 + EX31_RS01415 0.19 -0.5
315,725 - EX31_RS01415 0.19 +0.4
315,733 + EX31_RS01415 0.19 +0.9
315,734 - EX31_RS01415 0.19 +0.8
315,779 + EX31_RS01415 0.21 -1.2
315,780 - EX31_RS01415 0.21 +0.5
315,782 + EX31_RS01415 0.21 +0.8
315,782 + EX31_RS01415 0.21 -0.4
315,782 + EX31_RS01415 0.21 -1.0
315,783 - EX31_RS01415 0.21 +0.3
315,820 - EX31_RS01415 0.22 +0.3
315,820 - EX31_RS01415 0.22 +0.2
315,820 - EX31_RS01415 0.22 +0.7
315,875 + EX31_RS01415 0.24 +0.1
315,932 + EX31_RS01415 0.26 -0.5
315,932 + EX31_RS01415 0.26 +0.4
316,041 + EX31_RS01415 0.29 -0.6
316,134 - EX31_RS01415 0.32 -0.8
316,234 - EX31_RS01415 0.36 +1.4
316,254 + EX31_RS01415 0.37 +0.1
316,254 + EX31_RS01415 0.37 +0.7
316,254 + EX31_RS01415 0.37 +1.6
316,255 - EX31_RS01415 0.37 -0.1
316,256 + EX31_RS01415 0.37 +1.4
316,257 - EX31_RS01415 0.37 +0.8
316,497 - EX31_RS01415 0.45 +2.2
316,535 + EX31_RS01415 0.46 +0.1
316,535 + EX31_RS01415 0.46 +1.6
316,535 + EX31_RS01415 0.46 -0.7
316,749 + EX31_RS01415 0.53 -0.0
316,782 - EX31_RS01415 0.54 +0.3
316,938 - EX31_RS01415 0.60 +0.5
317,025 - EX31_RS01415 0.62 +1.1
317,025 - EX31_RS01415 0.62 -0.9
317,038 + EX31_RS01415 0.63 -0.1
317,038 + EX31_RS01415 0.63 -2.5
317,039 - EX31_RS01415 0.63 -0.6
317,147 + EX31_RS01415 0.67 -1.6
317,147 + EX31_RS01415 0.67 +1.2
317,148 - EX31_RS01415 0.67 +1.0
317,148 - EX31_RS01415 0.67 +0.5
317,412 - EX31_RS01415 0.75 +0.9
317,412 - EX31_RS01415 0.75 -1.2
317,546 + EX31_RS01415 0.80 +0.2
317,546 + EX31_RS01415 0.80 -1.6
317,546 + EX31_RS01415 0.80 +1.0
317,546 + EX31_RS01415 0.80 +2.2
317,546 + EX31_RS01415 0.80 +0.6
317,547 - EX31_RS01415 0.80 -0.2
317,668 + EX31_RS01415 0.84 -0.6
317,668 + EX31_RS01415 0.84 -0.1
317,669 - EX31_RS01415 0.84 +0.7
317,685 + EX31_RS01415 0.85 -0.4
317,685 + EX31_RS01415 0.85 +0.5
317,686 - EX31_RS01415 0.85 +0.2
317,686 - EX31_RS01415 0.85 +0.4
317,735 + EX31_RS01415 0.86 +0.7
317,768 + EX31_RS01415 0.87 +2.2
317,808 + EX31_RS01415 0.89 -1.1
317,808 + EX31_RS01415 0.89 +0.4
317,904 + -2.1
317,905 - -0.8
317,906 + -0.4
317,907 - -0.8
317,907 - -0.9
318,021 - +1.7
318,086 + -0.2
318,086 + -0.3
318,086 + +3.4
318,087 - -0.1
318,128 - -0.1
318,428 + EX31_RS01420 0.12 +0.6
318,428 + EX31_RS01420 0.12 -0.6
318,429 - EX31_RS01420 0.12 -0.4
318,633 - EX31_RS01420 0.21 -1.8
318,673 + EX31_RS01420 0.23 +0.6
318,716 - EX31_RS01420 0.24 -2.9
318,794 + EX31_RS01420 0.28 -0.3
318,906 - EX31_RS01420 0.32 +0.2
319,122 + EX31_RS01420 0.41 -0.1
319,122 + EX31_RS01420 0.41 +1.7
319,123 - EX31_RS01420 0.41 -0.7

Or see this region's nucleotide sequence