Strain Fitness in Rahnella sp. WP5 around EX31_RS23925

Experiment: NL-CCM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS23920 and EX31_RS23925 are separated by 141 nucleotidesEX31_RS23925 and EX31_RS23930 are separated by 187 nucleotides EX31_RS23920: EX31_RS23920 - LysR family transcriptional regulator, at 552,057 to 552,953 _RS23920 EX31_RS23925: EX31_RS23925 - suppressor of fused domain protein, at 553,095 to 554,201 _RS23925 EX31_RS23930: EX31_RS23930 - MFS transporter, at 554,389 to 555,885 _RS23930 Position (kb) 553 554 555Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 552.176 kb on + strand, within EX31_RS23920at 552.506 kb on + strand, within EX31_RS23920at 552.510 kb on + strand, within EX31_RS23920at 552.511 kb on - strand, within EX31_RS23920at 552.513 kb on + strand, within EX31_RS23920at 552.513 kb on + strand, within EX31_RS23920at 552.513 kb on + strand, within EX31_RS23920at 552.513 kb on + strand, within EX31_RS23920at 552.513 kb on + strand, within EX31_RS23920at 552.513 kb on + strand, within EX31_RS23920at 552.513 kb on + strand, within EX31_RS23920at 552.514 kb on - strand, within EX31_RS23920at 552.514 kb on - strand, within EX31_RS23920at 552.514 kb on - strand, within EX31_RS23920at 552.514 kb on - strand, within EX31_RS23920at 552.514 kb on - strand, within EX31_RS23920at 552.514 kb on - strand, within EX31_RS23920at 552.514 kb on - strand, within EX31_RS23920at 552.514 kb on - strand, within EX31_RS23920at 552.514 kb on - strand, within EX31_RS23920at 552.541 kb on + strand, within EX31_RS23920at 552.541 kb on + strand, within EX31_RS23920at 552.543 kb on + strand, within EX31_RS23920at 552.555 kb on - strand, within EX31_RS23920at 552.666 kb on + strand, within EX31_RS23920at 552.666 kb on + strand, within EX31_RS23920at 552.670 kb on - strand, within EX31_RS23920at 552.716 kb on + strand, within EX31_RS23920at 552.717 kb on - strand, within EX31_RS23920at 552.740 kb on + strand, within EX31_RS23920at 552.741 kb on - strand, within EX31_RS23920at 552.873 kb on + strandat 552.873 kb on + strandat 552.873 kb on + strandat 552.873 kb on + strandat 552.874 kb on - strandat 552.874 kb on - strandat 552.943 kb on - strandat 552.993 kb on + strandat 553.035 kb on + strandat 553.045 kb on - strandat 553.065 kb on + strandat 553.066 kb on - strandat 553.068 kb on + strandat 553.068 kb on + strandat 553.068 kb on + strandat 553.068 kb on + strandat 553.068 kb on + strandat 553.069 kb on - strandat 553.069 kb on - strandat 553.069 kb on - strandat 553.094 kb on + strandat 553.094 kb on + strandat 553.095 kb on - strandat 553.179 kb on + strandat 553.179 kb on + strandat 553.179 kb on + strandat 553.179 kb on + strandat 553.180 kb on - strandat 553.185 kb on + strandat 553.247 kb on + strand, within EX31_RS23925at 553.247 kb on + strand, within EX31_RS23925at 553.247 kb on + strand, within EX31_RS23925at 553.248 kb on - strand, within EX31_RS23925at 553.323 kb on + strand, within EX31_RS23925at 553.324 kb on - strand, within EX31_RS23925at 553.423 kb on + strand, within EX31_RS23925at 553.455 kb on + strand, within EX31_RS23925at 553.455 kb on + strand, within EX31_RS23925at 553.455 kb on + strand, within EX31_RS23925at 553.455 kb on + strand, within EX31_RS23925at 553.455 kb on + strand, within EX31_RS23925at 553.455 kb on + strand, within EX31_RS23925at 553.455 kb on + strand, within EX31_RS23925at 553.456 kb on - strand, within EX31_RS23925at 553.671 kb on + strand, within EX31_RS23925at 553.672 kb on - strand, within EX31_RS23925at 553.737 kb on + strand, within EX31_RS23925at 553.738 kb on - strand, within EX31_RS23925at 553.738 kb on - strand, within EX31_RS23925at 553.740 kb on + strand, within EX31_RS23925at 553.740 kb on + strand, within EX31_RS23925at 553.787 kb on + strand, within EX31_RS23925at 553.855 kb on - strand, within EX31_RS23925at 554.009 kb on - strand, within EX31_RS23925at 554.234 kb on + strandat 554.320 kb on - strandat 554.323 kb on + strandat 554.323 kb on + strandat 554.323 kb on + strandat 554.324 kb on - strandat 554.455 kb on + strandat 554.473 kb on + strandat 554.473 kb on + strandat 554.473 kb on + strandat 554.474 kb on - strandat 554.474 kb on - strandat 554.687 kb on - strand, within EX31_RS23930at 554.740 kb on + strand, within EX31_RS23930at 554.740 kb on + strand, within EX31_RS23930at 554.789 kb on + strand, within EX31_RS23930at 554.790 kb on - strand, within EX31_RS23930at 554.822 kb on + strand, within EX31_RS23930at 554.822 kb on + strand, within EX31_RS23930at 554.823 kb on - strand, within EX31_RS23930at 554.823 kb on - strand, within EX31_RS23930at 554.823 kb on - strand, within EX31_RS23930at 554.823 kb on - strand, within EX31_RS23930at 554.823 kb on - strand, within EX31_RS23930at 554.823 kb on - strand, within EX31_RS23930at 554.823 kb on - strand, within EX31_RS23930at 554.920 kb on + strand, within EX31_RS23930at 554.955 kb on - strand, within EX31_RS23930at 554.955 kb on - strand, within EX31_RS23930at 555.009 kb on - strand, within EX31_RS23930at 555.009 kb on - strand, within EX31_RS23930at 555.032 kb on + strand, within EX31_RS23930at 555.033 kb on - strand, within EX31_RS23930at 555.110 kb on + strand, within EX31_RS23930at 555.110 kb on + strand, within EX31_RS23930at 555.111 kb on - strand, within EX31_RS23930at 555.183 kb on + strand, within EX31_RS23930at 555.183 kb on + strand, within EX31_RS23930at 555.184 kb on - strand, within EX31_RS23930at 555.184 kb on - strand, within EX31_RS23930at 555.184 kb on - strand, within EX31_RS23930at 555.184 kb on - strand, within EX31_RS23930at 555.184 kb on - strand, within EX31_RS23930at 555.184 kb on - strand, within EX31_RS23930at 555.185 kb on + strand, within EX31_RS23930at 555.185 kb on + strand, within EX31_RS23930at 555.186 kb on - strand, within EX31_RS23930at 555.186 kb on - strand, within EX31_RS23930

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM
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552,176 + EX31_RS23920 0.13 +0.4
552,506 + EX31_RS23920 0.50 +1.2
552,510 + EX31_RS23920 0.51 +0.8
552,511 - EX31_RS23920 0.51 -1.0
552,513 + EX31_RS23920 0.51 +1.0
552,513 + EX31_RS23920 0.51 -0.6
552,513 + EX31_RS23920 0.51 +0.7
552,513 + EX31_RS23920 0.51 -0.1
552,513 + EX31_RS23920 0.51 +1.2
552,513 + EX31_RS23920 0.51 +0.1
552,513 + EX31_RS23920 0.51 +0.2
552,514 - EX31_RS23920 0.51 +2.1
552,514 - EX31_RS23920 0.51 -0.5
552,514 - EX31_RS23920 0.51 -0.9
552,514 - EX31_RS23920 0.51 +0.9
552,514 - EX31_RS23920 0.51 -0.1
552,514 - EX31_RS23920 0.51 -2.1
552,514 - EX31_RS23920 0.51 +0.0
552,514 - EX31_RS23920 0.51 +0.5
552,514 - EX31_RS23920 0.51 +0.4
552,541 + EX31_RS23920 0.54 -0.1
552,541 + EX31_RS23920 0.54 +0.4
552,543 + EX31_RS23920 0.54 +0.3
552,555 - EX31_RS23920 0.56 +0.0
552,666 + EX31_RS23920 0.68 -0.7
552,666 + EX31_RS23920 0.68 -0.2
552,670 - EX31_RS23920 0.68 +0.3
552,716 + EX31_RS23920 0.73 -0.1
552,717 - EX31_RS23920 0.74 -1.3
552,740 + EX31_RS23920 0.76 -0.1
552,741 - EX31_RS23920 0.76 +0.1
552,873 + -0.7
552,873 + +0.1
552,873 + +0.3
552,873 + +0.1
552,874 - -0.6
552,874 - +0.6
552,943 - -0.1
552,993 + -0.5
553,035 + +0.3
553,045 - +0.4
553,065 + -0.5
553,066 - +0.9
553,068 + -0.0
553,068 + -0.3
553,068 + -1.3
553,068 + -1.5
553,068 + -0.6
553,069 - -0.3
553,069 - -0.1
553,069 - +0.3
553,094 + +0.7
553,094 + +0.1
553,095 - -0.8
553,179 + +1.1
553,179 + +0.4
553,179 + +0.1
553,179 + -0.3
553,180 - +1.4
553,185 + -0.3
553,247 + EX31_RS23925 0.14 -0.2
553,247 + EX31_RS23925 0.14 -0.3
553,247 + EX31_RS23925 0.14 -1.0
553,248 - EX31_RS23925 0.14 -1.1
553,323 + EX31_RS23925 0.21 +0.5
553,324 - EX31_RS23925 0.21 +0.9
553,423 + EX31_RS23925 0.30 +0.2
553,455 + EX31_RS23925 0.33 -0.7
553,455 + EX31_RS23925 0.33 +0.1
553,455 + EX31_RS23925 0.33 +0.5
553,455 + EX31_RS23925 0.33 +0.6
553,455 + EX31_RS23925 0.33 -0.9
553,455 + EX31_RS23925 0.33 -0.5
553,455 + EX31_RS23925 0.33 +0.2
553,456 - EX31_RS23925 0.33 -0.5
553,671 + EX31_RS23925 0.52 -0.7
553,672 - EX31_RS23925 0.52 -0.7
553,737 + EX31_RS23925 0.58 -2.6
553,738 - EX31_RS23925 0.58 -0.6
553,738 - EX31_RS23925 0.58 -0.8
553,740 + EX31_RS23925 0.58 -0.2
553,740 + EX31_RS23925 0.58 +0.3
553,787 + EX31_RS23925 0.63 -1.1
553,855 - EX31_RS23925 0.69 -1.8
554,009 - EX31_RS23925 0.83 -1.6
554,234 + +0.9
554,320 - -0.4
554,323 + +0.1
554,323 + +0.7
554,323 + -1.0
554,324 - -0.6
554,455 + +0.6
554,473 + +0.9
554,473 + -1.2
554,473 + +0.3
554,474 - -0.6
554,474 - +0.1
554,687 - EX31_RS23930 0.20 +0.5
554,740 + EX31_RS23930 0.23 -0.2
554,740 + EX31_RS23930 0.23 -1.1
554,789 + EX31_RS23930 0.27 -0.0
554,790 - EX31_RS23930 0.27 -0.3
554,822 + EX31_RS23930 0.29 +1.0
554,822 + EX31_RS23930 0.29 -0.2
554,823 - EX31_RS23930 0.29 +0.4
554,823 - EX31_RS23930 0.29 -1.5
554,823 - EX31_RS23930 0.29 -1.2
554,823 - EX31_RS23930 0.29 -1.3
554,823 - EX31_RS23930 0.29 -0.0
554,823 - EX31_RS23930 0.29 -0.9
554,823 - EX31_RS23930 0.29 +0.9
554,920 + EX31_RS23930 0.35 -0.7
554,955 - EX31_RS23930 0.38 +1.1
554,955 - EX31_RS23930 0.38 +1.1
555,009 - EX31_RS23930 0.41 +0.1
555,009 - EX31_RS23930 0.41 +0.3
555,032 + EX31_RS23930 0.43 +0.3
555,033 - EX31_RS23930 0.43 +1.4
555,110 + EX31_RS23930 0.48 -1.4
555,110 + EX31_RS23930 0.48 +0.1
555,111 - EX31_RS23930 0.48 -0.2
555,183 + EX31_RS23930 0.53 -0.9
555,183 + EX31_RS23930 0.53 -0.6
555,184 - EX31_RS23930 0.53 -0.6
555,184 - EX31_RS23930 0.53 -0.3
555,184 - EX31_RS23930 0.53 -1.5
555,184 - EX31_RS23930 0.53 +0.5
555,184 - EX31_RS23930 0.53 +1.5
555,184 - EX31_RS23930 0.53 -0.0
555,185 + EX31_RS23930 0.53 -3.3
555,185 + EX31_RS23930 0.53 +1.3
555,186 - EX31_RS23930 0.53 -0.9
555,186 - EX31_RS23930 0.53 -2.5

Or see this region's nucleotide sequence