Strain Fitness in Rahnella sp. WP5 around EX31_RS23395

Experiment: NL-CCM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS23385 and EX31_RS23390 overlap by 7 nucleotidesEX31_RS23390 and EX31_RS23395 overlap by 11 nucleotidesEX31_RS23395 and EX31_RS23400 are separated by 27 nucleotidesEX31_RS23400 and EX31_RS23405 overlap by 1 nucleotides EX31_RS23385: EX31_RS23385 - 5-oxoprolinase subunit PxpB, at 441,600 to 442,265 _RS23385 EX31_RS23390: EX31_RS23390 - biotin-dependent carboxyltransferase family protein, at 442,259 to 443,188 _RS23390 EX31_RS23395: EX31_RS23395 - 5-oxoprolinase subunit PxpA, at 443,178 to 443,915 _RS23395 EX31_RS23400: EX31_RS23400 - pyroglutamyl-peptidase I, at 443,943 to 444,593 _RS23400 EX31_RS23405: EX31_RS23405 - endonuclease VIII, at 444,593 to 445,387 _RS23405 Position (kb) 443 444Strain fitness (log2 ratio) -2 -1 0 1at 442.258 kb on + strandat 442.258 kb on + strandat 442.258 kb on + strandat 442.258 kb on + strandat 442.258 kb on + strandat 442.305 kb on + strandat 442.423 kb on + strand, within EX31_RS23390at 442.424 kb on - strand, within EX31_RS23390at 442.507 kb on + strand, within EX31_RS23390at 442.507 kb on + strand, within EX31_RS23390at 442.508 kb on - strand, within EX31_RS23390at 442.532 kb on + strand, within EX31_RS23390at 442.592 kb on + strand, within EX31_RS23390at 442.592 kb on + strand, within EX31_RS23390at 442.702 kb on + strand, within EX31_RS23390at 442.703 kb on - strand, within EX31_RS23390at 442.753 kb on + strand, within EX31_RS23390at 442.870 kb on + strand, within EX31_RS23390at 442.870 kb on + strand, within EX31_RS23390at 442.871 kb on - strand, within EX31_RS23390at 442.871 kb on - strand, within EX31_RS23390at 443.057 kb on + strand, within EX31_RS23390at 443.059 kb on + strand, within EX31_RS23390at 443.060 kb on - strand, within EX31_RS23390at 443.134 kb on - strandat 443.134 kb on - strandat 443.192 kb on + strandat 443.192 kb on + strandat 443.192 kb on + strandat 443.413 kb on - strand, within EX31_RS23395at 443.413 kb on - strand, within EX31_RS23395at 443.413 kb on - strand, within EX31_RS23395at 443.427 kb on + strand, within EX31_RS23395at 443.485 kb on + strand, within EX31_RS23395at 443.485 kb on + strand, within EX31_RS23395at 443.486 kb on - strand, within EX31_RS23395at 443.486 kb on - strand, within EX31_RS23395at 443.505 kb on + strand, within EX31_RS23395at 443.505 kb on + strand, within EX31_RS23395at 443.505 kb on + strand, within EX31_RS23395at 443.506 kb on - strand, within EX31_RS23395at 443.506 kb on - strand, within EX31_RS23395at 443.557 kb on + strand, within EX31_RS23395at 443.558 kb on - strand, within EX31_RS23395at 443.558 kb on - strand, within EX31_RS23395at 443.558 kb on - strand, within EX31_RS23395at 443.558 kb on - strand, within EX31_RS23395at 443.762 kb on - strand, within EX31_RS23395at 443.762 kb on - strand, within EX31_RS23395at 443.936 kb on + strandat 443.936 kb on + strandat 443.936 kb on + strandat 443.936 kb on + strandat 443.936 kb on + strandat 443.937 kb on - strandat 443.937 kb on - strandat 443.937 kb on - strandat 443.937 kb on - strandat 444.010 kb on + strand, within EX31_RS23400at 444.011 kb on - strand, within EX31_RS23400at 444.011 kb on - strand, within EX31_RS23400at 444.011 kb on - strand, within EX31_RS23400at 444.013 kb on + strand, within EX31_RS23400at 444.013 kb on + strand, within EX31_RS23400at 444.014 kb on - strand, within EX31_RS23400at 444.316 kb on + strand, within EX31_RS23400at 444.316 kb on + strand, within EX31_RS23400at 444.363 kb on + strand, within EX31_RS23400at 444.363 kb on + strand, within EX31_RS23400at 444.363 kb on + strand, within EX31_RS23400at 444.363 kb on + strand, within EX31_RS23400at 444.363 kb on + strand, within EX31_RS23400at 444.364 kb on - strand, within EX31_RS23400at 444.364 kb on - strand, within EX31_RS23400at 444.364 kb on - strand, within EX31_RS23400at 444.364 kb on - strand, within EX31_RS23400at 444.364 kb on - strand, within EX31_RS23400at 444.371 kb on + strand, within EX31_RS23400at 444.372 kb on - strand, within EX31_RS23400at 444.384 kb on + strand, within EX31_RS23400at 444.385 kb on - strand, within EX31_RS23400at 444.419 kb on + strand, within EX31_RS23400at 444.494 kb on + strand, within EX31_RS23400at 444.494 kb on + strand, within EX31_RS23400at 444.494 kb on + strand, within EX31_RS23400at 444.494 kb on + strand, within EX31_RS23400at 444.494 kb on + strand, within EX31_RS23400at 444.494 kb on + strand, within EX31_RS23400at 444.494 kb on + strand, within EX31_RS23400at 444.494 kb on + strand, within EX31_RS23400at 444.494 kb on + strand, within EX31_RS23400at 444.494 kb on + strand, within EX31_RS23400at 444.494 kb on + strand, within EX31_RS23400at 444.494 kb on + strand, within EX31_RS23400at 444.495 kb on - strand, within EX31_RS23400at 444.495 kb on - strand, within EX31_RS23400at 444.495 kb on - strand, within EX31_RS23400at 444.495 kb on - strand, within EX31_RS23400at 444.495 kb on - strand, within EX31_RS23400at 444.495 kb on - strand, within EX31_RS23400at 444.495 kb on - strand, within EX31_RS23400at 444.495 kb on - strand, within EX31_RS23400at 444.502 kb on + strand, within EX31_RS23400at 444.502 kb on + strand, within EX31_RS23400at 444.502 kb on + strand, within EX31_RS23400at 444.502 kb on + strand, within EX31_RS23400at 444.502 kb on + strand, within EX31_RS23400at 444.502 kb on + strand, within EX31_RS23400at 444.502 kb on + strand, within EX31_RS23400at 444.502 kb on + strand, within EX31_RS23400at 444.502 kb on + strand, within EX31_RS23400at 444.503 kb on - strand, within EX31_RS23400at 444.503 kb on - strand, within EX31_RS23400at 444.506 kb on + strand, within EX31_RS23400at 444.506 kb on + strand, within EX31_RS23400at 444.506 kb on + strand, within EX31_RS23400at 444.506 kb on + strand, within EX31_RS23400at 444.506 kb on + strand, within EX31_RS23400at 444.506 kb on + strand, within EX31_RS23400at 444.506 kb on + strand, within EX31_RS23400at 444.506 kb on + strand, within EX31_RS23400at 444.506 kb on + strand, within EX31_RS23400at 444.506 kb on + strand, within EX31_RS23400at 444.506 kb on + strand, within EX31_RS23400at 444.507 kb on - strand, within EX31_RS23400at 444.507 kb on - strand, within EX31_RS23400at 444.507 kb on - strand, within EX31_RS23400at 444.507 kb on - strand, within EX31_RS23400at 444.507 kb on - strand, within EX31_RS23400at 444.507 kb on - strand, within EX31_RS23400at 444.507 kb on - strand, within EX31_RS23400at 444.507 kb on - strand, within EX31_RS23400at 444.507 kb on - strand, within EX31_RS23400at 444.507 kb on - strand, within EX31_RS23400at 444.637 kb on + strandat 444.788 kb on + strand, within EX31_RS23405at 444.788 kb on + strand, within EX31_RS23405at 444.789 kb on - strand, within EX31_RS23405at 444.806 kb on + strand, within EX31_RS23405at 444.906 kb on - strand, within EX31_RS23405

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM
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442,258 + -0.2
442,258 + +0.4
442,258 + +0.0
442,258 + +0.5
442,258 + +0.3
442,305 + +0.5
442,423 + EX31_RS23390 0.18 -0.9
442,424 - EX31_RS23390 0.18 +1.3
442,507 + EX31_RS23390 0.27 +0.2
442,507 + EX31_RS23390 0.27 -0.4
442,508 - EX31_RS23390 0.27 +0.1
442,532 + EX31_RS23390 0.29 +0.2
442,592 + EX31_RS23390 0.36 +0.7
442,592 + EX31_RS23390 0.36 +0.2
442,702 + EX31_RS23390 0.48 +0.6
442,703 - EX31_RS23390 0.48 -1.1
442,753 + EX31_RS23390 0.53 +0.0
442,870 + EX31_RS23390 0.66 -0.5
442,870 + EX31_RS23390 0.66 -0.9
442,871 - EX31_RS23390 0.66 -0.3
442,871 - EX31_RS23390 0.66 +1.0
443,057 + EX31_RS23390 0.86 +0.2
443,059 + EX31_RS23390 0.86 -0.8
443,060 - EX31_RS23390 0.86 +0.7
443,134 - -0.1
443,134 - -0.3
443,192 + -0.8
443,192 + -0.7
443,192 + -0.1
443,413 - EX31_RS23395 0.32 +0.4
443,413 - EX31_RS23395 0.32 -0.8
443,413 - EX31_RS23395 0.32 -0.8
443,427 + EX31_RS23395 0.34 -0.8
443,485 + EX31_RS23395 0.42 +0.2
443,485 + EX31_RS23395 0.42 +0.0
443,486 - EX31_RS23395 0.42 -0.2
443,486 - EX31_RS23395 0.42 -0.5
443,505 + EX31_RS23395 0.44 -0.9
443,505 + EX31_RS23395 0.44 -2.0
443,505 + EX31_RS23395 0.44 -0.5
443,506 - EX31_RS23395 0.44 -0.4
443,506 - EX31_RS23395 0.44 -1.4
443,557 + EX31_RS23395 0.51 -0.3
443,558 - EX31_RS23395 0.51 -0.2
443,558 - EX31_RS23395 0.51 +1.5
443,558 - EX31_RS23395 0.51 +0.1
443,558 - EX31_RS23395 0.51 -1.7
443,762 - EX31_RS23395 0.79 -1.0
443,762 - EX31_RS23395 0.79 +0.5
443,936 + -1.1
443,936 + -1.0
443,936 + -1.3
443,936 + -0.4
443,936 + +0.7
443,937 - -0.6
443,937 - -0.5
443,937 - -0.5
443,937 - -0.8
444,010 + EX31_RS23400 0.10 +0.8
444,011 - EX31_RS23400 0.10 -0.7
444,011 - EX31_RS23400 0.10 +0.0
444,011 - EX31_RS23400 0.10 -0.6
444,013 + EX31_RS23400 0.11 +0.3
444,013 + EX31_RS23400 0.11 -0.6
444,014 - EX31_RS23400 0.11 +0.2
444,316 + EX31_RS23400 0.57 -0.7
444,316 + EX31_RS23400 0.57 +0.2
444,363 + EX31_RS23400 0.65 -0.3
444,363 + EX31_RS23400 0.65 -0.3
444,363 + EX31_RS23400 0.65 +0.4
444,363 + EX31_RS23400 0.65 +0.2
444,363 + EX31_RS23400 0.65 -0.2
444,364 - EX31_RS23400 0.65 +0.6
444,364 - EX31_RS23400 0.65 +1.0
444,364 - EX31_RS23400 0.65 -0.7
444,364 - EX31_RS23400 0.65 -1.0
444,364 - EX31_RS23400 0.65 -0.3
444,371 + EX31_RS23400 0.66 -0.3
444,372 - EX31_RS23400 0.66 +0.1
444,384 + EX31_RS23400 0.68 -0.5
444,385 - EX31_RS23400 0.68 -0.9
444,419 + EX31_RS23400 0.73 +0.2
444,494 + EX31_RS23400 0.85 -0.1
444,494 + EX31_RS23400 0.85 +0.6
444,494 + EX31_RS23400 0.85 -0.5
444,494 + EX31_RS23400 0.85 -0.6
444,494 + EX31_RS23400 0.85 +0.6
444,494 + EX31_RS23400 0.85 +0.2
444,494 + EX31_RS23400 0.85 +0.2
444,494 + EX31_RS23400 0.85 -0.8
444,494 + EX31_RS23400 0.85 +0.5
444,494 + EX31_RS23400 0.85 +0.7
444,494 + EX31_RS23400 0.85 +0.6
444,494 + EX31_RS23400 0.85 -0.1
444,495 - EX31_RS23400 0.85 +0.8
444,495 - EX31_RS23400 0.85 +1.0
444,495 - EX31_RS23400 0.85 -1.1
444,495 - EX31_RS23400 0.85 +0.8
444,495 - EX31_RS23400 0.85 -1.5
444,495 - EX31_RS23400 0.85 -0.1
444,495 - EX31_RS23400 0.85 +0.2
444,495 - EX31_RS23400 0.85 -0.5
444,502 + EX31_RS23400 0.86 +0.7
444,502 + EX31_RS23400 0.86 +0.3
444,502 + EX31_RS23400 0.86 -0.1
444,502 + EX31_RS23400 0.86 -0.4
444,502 + EX31_RS23400 0.86 +0.0
444,502 + EX31_RS23400 0.86 -0.7
444,502 + EX31_RS23400 0.86 -1.0
444,502 + EX31_RS23400 0.86 -0.5
444,502 + EX31_RS23400 0.86 +0.7
444,503 - EX31_RS23400 0.86 -0.1
444,503 - EX31_RS23400 0.86 -0.3
444,506 + EX31_RS23400 0.86 +0.2
444,506 + EX31_RS23400 0.86 -0.0
444,506 + EX31_RS23400 0.86 -0.4
444,506 + EX31_RS23400 0.86 +0.1
444,506 + EX31_RS23400 0.86 -0.9
444,506 + EX31_RS23400 0.86 +0.0
444,506 + EX31_RS23400 0.86 +0.6
444,506 + EX31_RS23400 0.86 +0.9
444,506 + EX31_RS23400 0.86 +0.7
444,506 + EX31_RS23400 0.86 -0.6
444,506 + EX31_RS23400 0.86 -0.0
444,507 - EX31_RS23400 0.87 +0.3
444,507 - EX31_RS23400 0.87 +0.4
444,507 - EX31_RS23400 0.87 -0.6
444,507 - EX31_RS23400 0.87 +1.2
444,507 - EX31_RS23400 0.87 +1.3
444,507 - EX31_RS23400 0.87 -0.4
444,507 - EX31_RS23400 0.87 +0.8
444,507 - EX31_RS23400 0.87 +0.4
444,507 - EX31_RS23400 0.87 +0.8
444,507 - EX31_RS23400 0.87 -1.1
444,637 + -1.9
444,788 + EX31_RS23405 0.25 +0.1
444,788 + EX31_RS23405 0.25 -0.1
444,789 - EX31_RS23405 0.25 -0.1
444,806 + EX31_RS23405 0.27 -0.7
444,906 - EX31_RS23405 0.39 -0.5

Or see this region's nucleotide sequence