Strain Fitness in Rahnella sp. WP5 around EX31_RS20295

Experiment: NL-CCM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS20290 and EX31_RS20295 are separated by 68 nucleotidesEX31_RS20295 and EX31_RS20305 are separated by 259 nucleotides EX31_RS20290: EX31_RS20290 - molecular chaperone, at 687,475 to 688,827 _RS20290 EX31_RS20295: EX31_RS20295 - aldo/keto reductase, at 688,896 to 689,849 _RS20295 EX31_RS20305: EX31_RS20305 - DHA2 family efflux MFS transporter permease subunit, at 690,109 to 691,584 _RS20305 Position (kb) 688 689 690Strain fitness (log2 ratio) -2 -1 0 1 2 3at 687.918 kb on + strand, within EX31_RS20290at 687.918 kb on + strand, within EX31_RS20290at 687.919 kb on - strand, within EX31_RS20290at 688.109 kb on + strand, within EX31_RS20290at 688.110 kb on - strand, within EX31_RS20290at 688.110 kb on - strand, within EX31_RS20290at 688.110 kb on - strand, within EX31_RS20290at 688.110 kb on - strand, within EX31_RS20290at 688.176 kb on + strand, within EX31_RS20290at 688.177 kb on - strand, within EX31_RS20290at 688.209 kb on + strand, within EX31_RS20290at 688.242 kb on + strand, within EX31_RS20290at 688.311 kb on + strand, within EX31_RS20290at 688.375 kb on + strand, within EX31_RS20290at 688.375 kb on + strand, within EX31_RS20290at 688.375 kb on + strand, within EX31_RS20290at 688.376 kb on - strand, within EX31_RS20290at 688.376 kb on - strand, within EX31_RS20290at 688.376 kb on - strand, within EX31_RS20290at 688.378 kb on - strand, within EX31_RS20290at 688.478 kb on - strand, within EX31_RS20290at 688.506 kb on + strand, within EX31_RS20290at 688.507 kb on - strand, within EX31_RS20290at 688.507 kb on - strand, within EX31_RS20290at 688.507 kb on - strand, within EX31_RS20290at 688.626 kb on + strand, within EX31_RS20290at 688.626 kb on + strand, within EX31_RS20290at 688.679 kb on + strand, within EX31_RS20290at 688.680 kb on - strand, within EX31_RS20290at 688.680 kb on - strand, within EX31_RS20290at 688.680 kb on - strand, within EX31_RS20290at 688.684 kb on + strand, within EX31_RS20290at 688.832 kb on + strandat 688.850 kb on + strandat 688.850 kb on + strandat 688.917 kb on + strandat 688.917 kb on + strandat 688.917 kb on + strandat 688.917 kb on + strandat 688.917 kb on + strandat 688.918 kb on - strandat 688.918 kb on - strandat 688.918 kb on - strandat 688.918 kb on - strandat 688.918 kb on - strandat 688.918 kb on - strandat 688.918 kb on - strandat 688.918 kb on - strandat 688.918 kb on - strandat 689.012 kb on + strand, within EX31_RS20295at 689.101 kb on - strand, within EX31_RS20295at 689.154 kb on - strand, within EX31_RS20295at 689.216 kb on - strand, within EX31_RS20295at 689.241 kb on - strand, within EX31_RS20295at 689.241 kb on - strand, within EX31_RS20295at 689.241 kb on - strand, within EX31_RS20295at 689.272 kb on + strand, within EX31_RS20295at 689.273 kb on - strand, within EX31_RS20295at 689.273 kb on - strand, within EX31_RS20295at 689.296 kb on + strand, within EX31_RS20295at 689.297 kb on - strand, within EX31_RS20295at 689.297 kb on - strand, within EX31_RS20295at 689.349 kb on - strand, within EX31_RS20295at 689.349 kb on - strand, within EX31_RS20295at 689.377 kb on + strand, within EX31_RS20295at 689.377 kb on + strand, within EX31_RS20295at 689.378 kb on - strand, within EX31_RS20295at 689.378 kb on - strand, within EX31_RS20295at 689.378 kb on - strand, within EX31_RS20295at 689.381 kb on + strand, within EX31_RS20295at 689.381 kb on + strand, within EX31_RS20295at 689.382 kb on - strand, within EX31_RS20295at 689.382 kb on - strand, within EX31_RS20295at 689.382 kb on - strand, within EX31_RS20295at 689.382 kb on - strand, within EX31_RS20295at 689.382 kb on - strand, within EX31_RS20295at 689.382 kb on - strand, within EX31_RS20295at 689.382 kb on - strand, within EX31_RS20295at 689.382 kb on - strand, within EX31_RS20295at 689.382 kb on - strand, within EX31_RS20295at 689.382 kb on - strand, within EX31_RS20295at 689.382 kb on - strand, within EX31_RS20295at 689.382 kb on - strand, within EX31_RS20295at 689.438 kb on + strand, within EX31_RS20295at 689.494 kb on + strand, within EX31_RS20295at 689.495 kb on - strand, within EX31_RS20295at 689.495 kb on - strand, within EX31_RS20295at 689.495 kb on - strand, within EX31_RS20295at 689.527 kb on - strand, within EX31_RS20295at 689.537 kb on + strand, within EX31_RS20295at 689.540 kb on + strand, within EX31_RS20295at 689.541 kb on - strand, within EX31_RS20295at 689.541 kb on - strand, within EX31_RS20295at 689.541 kb on - strand, within EX31_RS20295at 689.542 kb on + strand, within EX31_RS20295at 689.564 kb on + strand, within EX31_RS20295at 689.692 kb on + strand, within EX31_RS20295at 689.784 kb on + strandat 689.784 kb on + strandat 689.784 kb on + strandat 689.785 kb on - strandat 689.785 kb on - strandat 689.785 kb on - strandat 689.785 kb on - strandat 689.785 kb on - strandat 689.785 kb on - strandat 689.785 kb on - strandat 689.785 kb on - strandat 689.820 kb on - strandat 689.863 kb on + strandat 689.864 kb on - strandat 689.864 kb on - strandat 689.864 kb on - strandat 689.864 kb on - strandat 689.864 kb on - strandat 689.864 kb on - strandat 689.865 kb on + strandat 689.865 kb on + strandat 689.865 kb on + strandat 689.865 kb on + strandat 689.865 kb on + strandat 689.865 kb on + strandat 689.866 kb on - strandat 689.866 kb on - strandat 689.866 kb on - strandat 689.866 kb on - strandat 689.866 kb on - strandat 689.866 kb on - strandat 689.866 kb on - strandat 689.877 kb on - strandat 689.882 kb on + strandat 689.882 kb on + strandat 689.883 kb on - strandat 689.883 kb on - strandat 689.883 kb on - strandat 689.883 kb on - strandat 689.933 kb on - strandat 689.935 kb on - strandat 689.935 kb on - strandat 689.935 kb on - strandat 689.961 kb on + strandat 689.961 kb on + strandat 689.962 kb on - strandat 689.962 kb on - strandat 690.003 kb on - strandat 690.003 kb on - strandat 690.036 kb on - strandat 690.201 kb on + strandat 690.232 kb on - strandat 690.301 kb on + strand, within EX31_RS20305at 690.301 kb on + strand, within EX31_RS20305at 690.302 kb on - strand, within EX31_RS20305at 690.302 kb on - strand, within EX31_RS20305at 690.458 kb on + strand, within EX31_RS20305at 690.459 kb on - strand, within EX31_RS20305at 690.459 kb on - strand, within EX31_RS20305at 690.535 kb on + strand, within EX31_RS20305at 690.535 kb on + strand, within EX31_RS20305at 690.535 kb on + strand, within EX31_RS20305at 690.535 kb on + strand, within EX31_RS20305at 690.535 kb on + strand, within EX31_RS20305at 690.535 kb on + strand, within EX31_RS20305at 690.535 kb on + strand, within EX31_RS20305at 690.536 kb on - strand, within EX31_RS20305at 690.619 kb on + strand, within EX31_RS20305at 690.619 kb on + strand, within EX31_RS20305at 690.619 kb on + strand, within EX31_RS20305at 690.686 kb on + strand, within EX31_RS20305at 690.687 kb on - strand, within EX31_RS20305at 690.687 kb on - strand, within EX31_RS20305at 690.703 kb on + strand, within EX31_RS20305at 690.703 kb on + strand, within EX31_RS20305at 690.705 kb on + strand, within EX31_RS20305at 690.759 kb on + strand, within EX31_RS20305at 690.759 kb on + strand, within EX31_RS20305at 690.760 kb on - strand, within EX31_RS20305at 690.760 kb on - strand, within EX31_RS20305at 690.760 kb on - strand, within EX31_RS20305

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM
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687,918 + EX31_RS20290 0.33 -0.4
687,918 + EX31_RS20290 0.33 +0.0
687,919 - EX31_RS20290 0.33 -0.2
688,109 + EX31_RS20290 0.47 -0.6
688,110 - EX31_RS20290 0.47 -0.3
688,110 - EX31_RS20290 0.47 -0.7
688,110 - EX31_RS20290 0.47 +0.9
688,110 - EX31_RS20290 0.47 +0.1
688,176 + EX31_RS20290 0.52 -1.1
688,177 - EX31_RS20290 0.52 +0.2
688,209 + EX31_RS20290 0.54 -0.2
688,242 + EX31_RS20290 0.57 -0.1
688,311 + EX31_RS20290 0.62 -0.5
688,375 + EX31_RS20290 0.67 -0.2
688,375 + EX31_RS20290 0.67 -1.6
688,375 + EX31_RS20290 0.67 -0.2
688,376 - EX31_RS20290 0.67 -0.5
688,376 - EX31_RS20290 0.67 -0.6
688,376 - EX31_RS20290 0.67 -0.2
688,378 - EX31_RS20290 0.67 +0.3
688,478 - EX31_RS20290 0.74 -0.2
688,506 + EX31_RS20290 0.76 -0.9
688,507 - EX31_RS20290 0.76 -0.4
688,507 - EX31_RS20290 0.76 +2.5
688,507 - EX31_RS20290 0.76 -0.8
688,626 + EX31_RS20290 0.85 -0.1
688,626 + EX31_RS20290 0.85 -0.1
688,679 + EX31_RS20290 0.89 -1.0
688,680 - EX31_RS20290 0.89 -0.2
688,680 - EX31_RS20290 0.89 +0.1
688,680 - EX31_RS20290 0.89 +1.4
688,684 + EX31_RS20290 0.89 -1.2
688,832 + +0.2
688,850 + +0.2
688,850 + +0.1
688,917 + +0.8
688,917 + -0.9
688,917 + -1.0
688,917 + +0.8
688,917 + +0.5
688,918 - +3.0
688,918 - +0.6
688,918 - +0.0
688,918 - -0.9
688,918 - +0.2
688,918 - +0.5
688,918 - -1.2
688,918 - +0.8
688,918 - +0.0
689,012 + EX31_RS20295 0.12 +0.2
689,101 - EX31_RS20295 0.21 -0.9
689,154 - EX31_RS20295 0.27 -0.1
689,216 - EX31_RS20295 0.34 +0.3
689,241 - EX31_RS20295 0.36 -0.7
689,241 - EX31_RS20295 0.36 +0.6
689,241 - EX31_RS20295 0.36 +0.1
689,272 + EX31_RS20295 0.39 +0.6
689,273 - EX31_RS20295 0.40 +0.5
689,273 - EX31_RS20295 0.40 +0.5
689,296 + EX31_RS20295 0.42 +0.5
689,297 - EX31_RS20295 0.42 -0.3
689,297 - EX31_RS20295 0.42 -1.5
689,349 - EX31_RS20295 0.47 -0.2
689,349 - EX31_RS20295 0.47 -0.6
689,377 + EX31_RS20295 0.50 -0.6
689,377 + EX31_RS20295 0.50 +0.4
689,378 - EX31_RS20295 0.51 -0.5
689,378 - EX31_RS20295 0.51 +0.3
689,378 - EX31_RS20295 0.51 +0.4
689,381 + EX31_RS20295 0.51 +0.6
689,381 + EX31_RS20295 0.51 -0.3
689,382 - EX31_RS20295 0.51 +0.4
689,382 - EX31_RS20295 0.51 -0.2
689,382 - EX31_RS20295 0.51 -0.0
689,382 - EX31_RS20295 0.51 -0.4
689,382 - EX31_RS20295 0.51 -0.6
689,382 - EX31_RS20295 0.51 -1.5
689,382 - EX31_RS20295 0.51 -0.7
689,382 - EX31_RS20295 0.51 -0.1
689,382 - EX31_RS20295 0.51 +0.2
689,382 - EX31_RS20295 0.51 +0.3
689,382 - EX31_RS20295 0.51 +1.3
689,382 - EX31_RS20295 0.51 +0.8
689,438 + EX31_RS20295 0.57 +0.1
689,494 + EX31_RS20295 0.63 +1.0
689,495 - EX31_RS20295 0.63 -0.8
689,495 - EX31_RS20295 0.63 -0.5
689,495 - EX31_RS20295 0.63 -0.0
689,527 - EX31_RS20295 0.66 -0.4
689,537 + EX31_RS20295 0.67 +0.9
689,540 + EX31_RS20295 0.68 +0.9
689,541 - EX31_RS20295 0.68 -0.3
689,541 - EX31_RS20295 0.68 +0.3
689,541 - EX31_RS20295 0.68 -0.3
689,542 + EX31_RS20295 0.68 +0.2
689,564 + EX31_RS20295 0.70 -0.6
689,692 + EX31_RS20295 0.83 +0.6
689,784 + -0.6
689,784 + -0.1
689,784 + -0.2
689,785 - -0.1
689,785 - +0.7
689,785 - -0.1
689,785 - -0.5
689,785 - -0.4
689,785 - -0.7
689,785 - -0.4
689,785 - -0.6
689,820 - +0.3
689,863 + +0.3
689,864 - +0.5
689,864 - +0.2
689,864 - -0.0
689,864 - -2.0
689,864 - -2.0
689,864 - +1.1
689,865 + +0.2
689,865 + -0.2
689,865 + +0.5
689,865 + -0.1
689,865 + +0.4
689,865 + +0.0
689,866 - +0.2
689,866 - -0.9
689,866 - -0.4
689,866 - +0.4
689,866 - -0.4
689,866 - -0.5
689,866 - +0.6
689,877 - +0.1
689,882 + +0.4
689,882 + +0.4
689,883 - +0.6
689,883 - +0.7
689,883 - -0.5
689,883 - -0.1
689,933 - +0.6
689,935 - -0.1
689,935 - +0.7
689,935 - +0.4
689,961 + -0.3
689,961 + +0.0
689,962 - -0.5
689,962 - -1.5
690,003 - +0.3
690,003 - -0.2
690,036 - -1.1
690,201 + -0.3
690,232 - +0.0
690,301 + EX31_RS20305 0.13 -1.0
690,301 + EX31_RS20305 0.13 +0.1
690,302 - EX31_RS20305 0.13 -0.5
690,302 - EX31_RS20305 0.13 -0.1
690,458 + EX31_RS20305 0.24 +1.0
690,459 - EX31_RS20305 0.24 -0.7
690,459 - EX31_RS20305 0.24 +0.0
690,535 + EX31_RS20305 0.29 -0.6
690,535 + EX31_RS20305 0.29 -0.4
690,535 + EX31_RS20305 0.29 -0.1
690,535 + EX31_RS20305 0.29 -1.2
690,535 + EX31_RS20305 0.29 -0.8
690,535 + EX31_RS20305 0.29 +0.1
690,535 + EX31_RS20305 0.29 +1.3
690,536 - EX31_RS20305 0.29 -0.2
690,619 + EX31_RS20305 0.35 -0.4
690,619 + EX31_RS20305 0.35 +0.0
690,619 + EX31_RS20305 0.35 -0.2
690,686 + EX31_RS20305 0.39 -0.2
690,687 - EX31_RS20305 0.39 -0.9
690,687 - EX31_RS20305 0.39 +1.1
690,703 + EX31_RS20305 0.40 +0.5
690,703 + EX31_RS20305 0.40 -0.1
690,705 + EX31_RS20305 0.40 -1.2
690,759 + EX31_RS20305 0.44 +1.3
690,759 + EX31_RS20305 0.44 +0.5
690,760 - EX31_RS20305 0.44 +0.2
690,760 - EX31_RS20305 0.44 +1.0
690,760 - EX31_RS20305 0.44 -0.3

Or see this region's nucleotide sequence