Strain Fitness in Rahnella sp. WP5 around EX31_RS19910

Experiment: NL-CCM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS19900 and EX31_RS19905 are separated by 147 nucleotidesEX31_RS19905 and EX31_RS19910 overlap by 4 nucleotidesEX31_RS19910 and EX31_RS19915 are separated by 10 nucleotides EX31_RS19900: EX31_RS19900 - formate hydrogenlyase regulator HycA, at 609,531 to 609,998 _RS19900 EX31_RS19905: EX31_RS19905 - 4Fe-4S dicluster domain-containing protein, at 610,146 to 610,775 _RS19905 EX31_RS19910: EX31_RS19910 - NADH dehydrogenase, at 610,772 to 612,676 _RS19910 EX31_RS19915: EX31_RS19915 - respiratory chain complex I subunit 1 family protein, at 612,687 to 613,640 _RS19915 Position (kb) 610 611 612 613Strain fitness (log2 ratio) -2 -1 0 1 2at 609.867 kb on - strand, within EX31_RS19900at 609.869 kb on + strand, within EX31_RS19900at 609.875 kb on + strand, within EX31_RS19900at 609.875 kb on + strand, within EX31_RS19900at 609.875 kb on + strand, within EX31_RS19900at 609.875 kb on + strand, within EX31_RS19900at 609.876 kb on - strand, within EX31_RS19900at 609.897 kb on + strand, within EX31_RS19900at 609.898 kb on - strand, within EX31_RS19900at 609.898 kb on - strand, within EX31_RS19900at 609.898 kb on - strand, within EX31_RS19900at 609.898 kb on - strand, within EX31_RS19900at 609.918 kb on - strand, within EX31_RS19900at 609.922 kb on - strand, within EX31_RS19900at 609.922 kb on - strand, within EX31_RS19900at 609.922 kb on - strand, within EX31_RS19900at 609.951 kb on - strand, within EX31_RS19900at 610.001 kb on + strandat 610.001 kb on + strandat 610.001 kb on + strandat 610.002 kb on - strandat 610.002 kb on - strandat 610.002 kb on - strandat 610.013 kb on + strandat 610.014 kb on - strandat 610.014 kb on - strandat 610.014 kb on - strandat 610.014 kb on - strandat 610.031 kb on + strandat 610.072 kb on - strandat 610.082 kb on - strandat 610.082 kb on - strandat 610.082 kb on - strandat 610.101 kb on + strandat 610.101 kb on + strandat 610.102 kb on - strandat 610.102 kb on - strandat 610.102 kb on - strandat 610.102 kb on - strandat 610.131 kb on + strandat 610.132 kb on - strandat 610.132 kb on - strandat 610.132 kb on - strandat 610.173 kb on + strandat 610.173 kb on + strandat 610.173 kb on + strandat 610.173 kb on + strandat 610.173 kb on + strandat 610.174 kb on - strandat 610.180 kb on + strandat 610.200 kb on - strandat 610.200 kb on - strandat 610.211 kb on + strand, within EX31_RS19905at 610.211 kb on + strand, within EX31_RS19905at 610.211 kb on + strand, within EX31_RS19905at 610.212 kb on - strand, within EX31_RS19905at 610.255 kb on + strand, within EX31_RS19905at 610.364 kb on + strand, within EX31_RS19905at 610.364 kb on + strand, within EX31_RS19905at 610.496 kb on + strand, within EX31_RS19905at 610.496 kb on + strand, within EX31_RS19905at 610.497 kb on - strand, within EX31_RS19905at 610.497 kb on - strand, within EX31_RS19905at 610.497 kb on - strand, within EX31_RS19905at 610.597 kb on + strand, within EX31_RS19905at 610.720 kb on + strandat 610.720 kb on + strandat 610.721 kb on - strandat 610.721 kb on - strandat 610.746 kb on - strandat 610.782 kb on + strandat 610.782 kb on + strandat 610.782 kb on + strandat 610.783 kb on - strandat 610.786 kb on - strandat 610.846 kb on + strandat 610.846 kb on + strandat 610.847 kb on - strandat 610.858 kb on - strandat 610.878 kb on + strandat 610.879 kb on - strandat 610.879 kb on - strandat 610.879 kb on - strandat 610.930 kb on + strandat 610.930 kb on + strandat 610.930 kb on + strandat 610.931 kb on - strandat 610.931 kb on - strandat 610.950 kb on + strandat 610.951 kb on - strandat 610.975 kb on + strand, within EX31_RS19910at 610.975 kb on + strand, within EX31_RS19910at 610.975 kb on + strand, within EX31_RS19910at 610.975 kb on + strand, within EX31_RS19910at 610.975 kb on + strand, within EX31_RS19910at 610.976 kb on - strand, within EX31_RS19910at 611.070 kb on - strand, within EX31_RS19910at 611.070 kb on - strand, within EX31_RS19910at 611.070 kb on - strand, within EX31_RS19910at 611.128 kb on - strand, within EX31_RS19910at 611.222 kb on + strand, within EX31_RS19910at 611.222 kb on + strand, within EX31_RS19910at 611.223 kb on - strand, within EX31_RS19910at 611.235 kb on + strand, within EX31_RS19910at 611.235 kb on + strand, within EX31_RS19910at 611.235 kb on + strand, within EX31_RS19910at 611.235 kb on + strand, within EX31_RS19910at 611.235 kb on + strand, within EX31_RS19910at 611.235 kb on + strand, within EX31_RS19910at 611.236 kb on - strand, within EX31_RS19910at 611.236 kb on - strand, within EX31_RS19910at 611.236 kb on - strand, within EX31_RS19910at 611.236 kb on - strand, within EX31_RS19910at 611.236 kb on - strand, within EX31_RS19910at 611.236 kb on - strand, within EX31_RS19910at 611.383 kb on + strand, within EX31_RS19910at 611.395 kb on + strand, within EX31_RS19910at 611.396 kb on - strand, within EX31_RS19910at 611.438 kb on + strand, within EX31_RS19910at 611.450 kb on - strand, within EX31_RS19910at 611.553 kb on + strand, within EX31_RS19910at 611.553 kb on + strand, within EX31_RS19910at 611.553 kb on + strand, within EX31_RS19910at 611.554 kb on - strand, within EX31_RS19910at 611.554 kb on - strand, within EX31_RS19910at 611.554 kb on - strand, within EX31_RS19910at 611.554 kb on - strand, within EX31_RS19910at 611.607 kb on + strand, within EX31_RS19910at 611.607 kb on + strand, within EX31_RS19910at 611.608 kb on - strand, within EX31_RS19910at 611.687 kb on + strand, within EX31_RS19910at 611.825 kb on - strand, within EX31_RS19910at 611.875 kb on + strand, within EX31_RS19910at 611.876 kb on - strand, within EX31_RS19910at 611.876 kb on - strand, within EX31_RS19910at 612.002 kb on + strand, within EX31_RS19910at 612.003 kb on - strand, within EX31_RS19910at 612.041 kb on - strand, within EX31_RS19910at 612.109 kb on + strand, within EX31_RS19910at 612.109 kb on + strand, within EX31_RS19910at 612.110 kb on - strand, within EX31_RS19910at 612.110 kb on - strand, within EX31_RS19910at 612.110 kb on - strand, within EX31_RS19910at 612.207 kb on + strand, within EX31_RS19910at 612.207 kb on + strand, within EX31_RS19910at 612.208 kb on - strand, within EX31_RS19910at 612.208 kb on - strand, within EX31_RS19910at 612.208 kb on - strand, within EX31_RS19910at 612.418 kb on - strand, within EX31_RS19910at 612.686 kb on + strandat 612.686 kb on + strandat 612.790 kb on + strand, within EX31_RS19915at 612.791 kb on - strand, within EX31_RS19915at 612.841 kb on - strand, within EX31_RS19915at 612.841 kb on - strand, within EX31_RS19915at 612.848 kb on + strand, within EX31_RS19915at 612.849 kb on - strand, within EX31_RS19915at 612.849 kb on - strand, within EX31_RS19915at 612.919 kb on - strand, within EX31_RS19915at 612.938 kb on - strand, within EX31_RS19915at 613.017 kb on + strand, within EX31_RS19915at 613.017 kb on + strand, within EX31_RS19915at 613.017 kb on + strand, within EX31_RS19915at 613.018 kb on - strand, within EX31_RS19915at 613.018 kb on - strand, within EX31_RS19915at 613.018 kb on - strand, within EX31_RS19915at 613.018 kb on - strand, within EX31_RS19915at 613.018 kb on - strand, within EX31_RS19915at 613.031 kb on - strand, within EX31_RS19915at 613.231 kb on + strand, within EX31_RS19915at 613.272 kb on + strand, within EX31_RS19915at 613.272 kb on + strand, within EX31_RS19915at 613.272 kb on + strand, within EX31_RS19915at 613.272 kb on + strand, within EX31_RS19915at 613.272 kb on + strand, within EX31_RS19915at 613.272 kb on + strand, within EX31_RS19915at 613.272 kb on + strand, within EX31_RS19915at 613.272 kb on + strand, within EX31_RS19915at 613.272 kb on + strand, within EX31_RS19915at 613.272 kb on + strand, within EX31_RS19915at 613.272 kb on + strand, within EX31_RS19915at 613.272 kb on + strand, within EX31_RS19915at 613.272 kb on + strand, within EX31_RS19915at 613.273 kb on - strand, within EX31_RS19915at 613.273 kb on - strand, within EX31_RS19915at 613.273 kb on - strand, within EX31_RS19915at 613.273 kb on - strand, within EX31_RS19915at 613.273 kb on - strand, within EX31_RS19915at 613.273 kb on - strand, within EX31_RS19915at 613.273 kb on - strand, within EX31_RS19915at 613.273 kb on - strand, within EX31_RS19915at 613.273 kb on - strand, within EX31_RS19915at 613.273 kb on - strand, within EX31_RS19915at 613.273 kb on - strand, within EX31_RS19915at 613.324 kb on + strand, within EX31_RS19915at 613.324 kb on + strand, within EX31_RS19915at 613.324 kb on + strand, within EX31_RS19915at 613.414 kb on + strand, within EX31_RS19915at 613.414 kb on + strand, within EX31_RS19915at 613.415 kb on - strand, within EX31_RS19915at 613.415 kb on - strand, within EX31_RS19915at 613.415 kb on - strand, within EX31_RS19915at 613.517 kb on - strand, within EX31_RS19915at 613.565 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM
remove
609,867 - EX31_RS19900 0.72 +0.5
609,869 + EX31_RS19900 0.72 -0.0
609,875 + EX31_RS19900 0.74 +0.7
609,875 + EX31_RS19900 0.74 -1.3
609,875 + EX31_RS19900 0.74 -0.2
609,875 + EX31_RS19900 0.74 -0.1
609,876 - EX31_RS19900 0.74 -0.1
609,897 + EX31_RS19900 0.78 +0.3
609,898 - EX31_RS19900 0.78 -0.2
609,898 - EX31_RS19900 0.78 +0.3
609,898 - EX31_RS19900 0.78 -0.9
609,898 - EX31_RS19900 0.78 +0.1
609,918 - EX31_RS19900 0.83 -0.1
609,922 - EX31_RS19900 0.84 -0.2
609,922 - EX31_RS19900 0.84 -0.6
609,922 - EX31_RS19900 0.84 -0.1
609,951 - EX31_RS19900 0.90 -0.1
610,001 + +1.1
610,001 + -0.0
610,001 + +0.3
610,002 - +0.4
610,002 - -1.0
610,002 - -0.4
610,013 + +0.3
610,014 - -0.6
610,014 - +0.8
610,014 - -0.3
610,014 - -0.8
610,031 + -0.0
610,072 - +0.4
610,082 - +0.5
610,082 - +0.7
610,082 - -1.6
610,101 + -0.6
610,101 + +0.1
610,102 - +0.7
610,102 - +0.5
610,102 - +1.2
610,102 - +0.4
610,131 + -0.4
610,132 - +1.3
610,132 - -0.7
610,132 - +1.1
610,173 + +0.5
610,173 + -0.5
610,173 + -0.5
610,173 + -0.2
610,173 + -2.0
610,174 - +1.0
610,180 + -0.7
610,200 - -0.9
610,200 - +0.5
610,211 + EX31_RS19905 0.10 +0.4
610,211 + EX31_RS19905 0.10 -0.1
610,211 + EX31_RS19905 0.10 -0.4
610,212 - EX31_RS19905 0.10 -0.2
610,255 + EX31_RS19905 0.17 -1.3
610,364 + EX31_RS19905 0.35 -0.4
610,364 + EX31_RS19905 0.35 +0.0
610,496 + EX31_RS19905 0.56 +0.8
610,496 + EX31_RS19905 0.56 +0.1
610,497 - EX31_RS19905 0.56 -0.1
610,497 - EX31_RS19905 0.56 +0.3
610,497 - EX31_RS19905 0.56 +0.1
610,597 + EX31_RS19905 0.72 -0.1
610,720 + -0.1
610,720 + -0.2
610,721 - +0.5
610,721 - +0.5
610,746 - -1.6
610,782 + +0.3
610,782 + -0.8
610,782 + +0.8
610,783 - +0.2
610,786 - +0.4
610,846 + +0.0
610,846 + +0.0
610,847 - +0.3
610,858 - +0.1
610,878 + -0.1
610,879 - -0.9
610,879 - -1.1
610,879 - +0.0
610,930 + -0.2
610,930 + -0.2
610,930 + +0.6
610,931 - +0.3
610,931 - +0.4
610,950 + -0.2
610,951 - +0.8
610,975 + EX31_RS19910 0.11 -0.2
610,975 + EX31_RS19910 0.11 -0.2
610,975 + EX31_RS19910 0.11 +0.2
610,975 + EX31_RS19910 0.11 -0.7
610,975 + EX31_RS19910 0.11 -0.7
610,976 - EX31_RS19910 0.11 -0.1
611,070 - EX31_RS19910 0.16 -0.1
611,070 - EX31_RS19910 0.16 +0.3
611,070 - EX31_RS19910 0.16 -0.2
611,128 - EX31_RS19910 0.19 +0.1
611,222 + EX31_RS19910 0.24 -0.8
611,222 + EX31_RS19910 0.24 +0.1
611,223 - EX31_RS19910 0.24 -0.1
611,235 + EX31_RS19910 0.24 -0.3
611,235 + EX31_RS19910 0.24 -0.2
611,235 + EX31_RS19910 0.24 +0.5
611,235 + EX31_RS19910 0.24 +0.3
611,235 + EX31_RS19910 0.24 +0.4
611,235 + EX31_RS19910 0.24 -0.3
611,236 - EX31_RS19910 0.24 -0.5
611,236 - EX31_RS19910 0.24 +0.0
611,236 - EX31_RS19910 0.24 -0.0
611,236 - EX31_RS19910 0.24 +0.3
611,236 - EX31_RS19910 0.24 +0.5
611,236 - EX31_RS19910 0.24 +0.8
611,383 + EX31_RS19910 0.32 -0.1
611,395 + EX31_RS19910 0.33 -0.2
611,396 - EX31_RS19910 0.33 +0.7
611,438 + EX31_RS19910 0.35 +0.0
611,450 - EX31_RS19910 0.36 -0.2
611,553 + EX31_RS19910 0.41 +0.5
611,553 + EX31_RS19910 0.41 +0.3
611,553 + EX31_RS19910 0.41 -0.2
611,554 - EX31_RS19910 0.41 +0.3
611,554 - EX31_RS19910 0.41 -0.7
611,554 - EX31_RS19910 0.41 -0.4
611,554 - EX31_RS19910 0.41 -0.7
611,607 + EX31_RS19910 0.44 -0.2
611,607 + EX31_RS19910 0.44 -0.3
611,608 - EX31_RS19910 0.44 +0.7
611,687 + EX31_RS19910 0.48 -0.1
611,825 - EX31_RS19910 0.55 +0.7
611,875 + EX31_RS19910 0.58 -0.1
611,876 - EX31_RS19910 0.58 +0.6
611,876 - EX31_RS19910 0.58 -0.3
612,002 + EX31_RS19910 0.65 +0.2
612,003 - EX31_RS19910 0.65 -0.8
612,041 - EX31_RS19910 0.67 +0.1
612,109 + EX31_RS19910 0.70 -0.4
612,109 + EX31_RS19910 0.70 +0.3
612,110 - EX31_RS19910 0.70 -0.5
612,110 - EX31_RS19910 0.70 +0.1
612,110 - EX31_RS19910 0.70 +0.1
612,207 + EX31_RS19910 0.75 -0.0
612,207 + EX31_RS19910 0.75 -1.0
612,208 - EX31_RS19910 0.75 -0.1
612,208 - EX31_RS19910 0.75 -0.4
612,208 - EX31_RS19910 0.75 +0.6
612,418 - EX31_RS19910 0.86 +0.7
612,686 + +0.3
612,686 + +0.0
612,790 + EX31_RS19915 0.11 -0.0
612,791 - EX31_RS19915 0.11 -0.8
612,841 - EX31_RS19915 0.16 +0.2
612,841 - EX31_RS19915 0.16 -0.1
612,848 + EX31_RS19915 0.17 +0.0
612,849 - EX31_RS19915 0.17 +0.9
612,849 - EX31_RS19915 0.17 -0.6
612,919 - EX31_RS19915 0.24 +0.6
612,938 - EX31_RS19915 0.26 -0.2
613,017 + EX31_RS19915 0.35 +0.2
613,017 + EX31_RS19915 0.35 -0.8
613,017 + EX31_RS19915 0.35 +0.9
613,018 - EX31_RS19915 0.35 -0.6
613,018 - EX31_RS19915 0.35 +0.2
613,018 - EX31_RS19915 0.35 +0.4
613,018 - EX31_RS19915 0.35 +2.5
613,018 - EX31_RS19915 0.35 +1.5
613,031 - EX31_RS19915 0.36 -0.1
613,231 + EX31_RS19915 0.57 -0.4
613,272 + EX31_RS19915 0.61 -0.3
613,272 + EX31_RS19915 0.61 -0.6
613,272 + EX31_RS19915 0.61 -0.5
613,272 + EX31_RS19915 0.61 +0.0
613,272 + EX31_RS19915 0.61 +0.5
613,272 + EX31_RS19915 0.61 +0.0
613,272 + EX31_RS19915 0.61 -0.5
613,272 + EX31_RS19915 0.61 +0.0
613,272 + EX31_RS19915 0.61 -0.2
613,272 + EX31_RS19915 0.61 -0.0
613,272 + EX31_RS19915 0.61 +1.1
613,272 + EX31_RS19915 0.61 -0.1
613,272 + EX31_RS19915 0.61 +0.4
613,273 - EX31_RS19915 0.61 +1.5
613,273 - EX31_RS19915 0.61 -0.1
613,273 - EX31_RS19915 0.61 -0.6
613,273 - EX31_RS19915 0.61 -0.1
613,273 - EX31_RS19915 0.61 +1.2
613,273 - EX31_RS19915 0.61 -0.3
613,273 - EX31_RS19915 0.61 -0.0
613,273 - EX31_RS19915 0.61 +0.3
613,273 - EX31_RS19915 0.61 -0.4
613,273 - EX31_RS19915 0.61 -0.1
613,273 - EX31_RS19915 0.61 +0.2
613,324 + EX31_RS19915 0.67 -0.1
613,324 + EX31_RS19915 0.67 -0.8
613,324 + EX31_RS19915 0.67 -1.1
613,414 + EX31_RS19915 0.76 +0.0
613,414 + EX31_RS19915 0.76 +0.2
613,415 - EX31_RS19915 0.76 -0.4
613,415 - EX31_RS19915 0.76 +0.6
613,415 - EX31_RS19915 0.76 +0.4
613,517 - EX31_RS19915 0.87 -0.2
613,565 + -0.3

Or see this region's nucleotide sequence