Experiment: NL-CCM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS16660 and EX31_RS16665 overlap by 4 nucleotides EX31_RS16665 and EX31_RS16670 are separated by 60 nucleotides EX31_RS16670 and EX31_RS16675 are separated by 99 nucleotides EX31_RS16675 and EX31_RS16680 are separated by 55 nucleotides
EX31_RS16660: EX31_RS16660 - TetR/AcrR family transcriptional regulator, at 15,208 to 15,795
_RS16660
EX31_RS16665: EX31_RS16665 - EamA family transporter, at 15,792 to 16,718
_RS16665
EX31_RS16670: EX31_RS16670 - NAD(P)-dependent alcohol dehydrogenase, at 16,779 to 17,837
_RS16670
EX31_RS16675: EX31_RS16675 - histidine utilization repressor, at 17,937 to 18,686
_RS16675
EX31_RS16680: EX31_RS16680 - enoyl-CoA hydratase, at 18,742 to 19,512
_RS16680
Position (kb) 16
17
18 Strain fitness (log2 ratio) -2
-1
0
1 at 16.013 kb on - strand, within EX31_RS16665 at 16.016 kb on + strand, within EX31_RS16665 at 16.056 kb on + strand, within EX31_RS16665 at 16.057 kb on - strand, within EX31_RS16665 at 16.141 kb on - strand, within EX31_RS16665 at 16.141 kb on - strand, within EX31_RS16665 at 16.213 kb on + strand, within EX31_RS16665 at 16.214 kb on - strand, within EX31_RS16665 at 16.317 kb on + strand, within EX31_RS16665 at 16.339 kb on + strand, within EX31_RS16665 at 16.339 kb on + strand, within EX31_RS16665 at 16.339 kb on + strand, within EX31_RS16665 at 16.340 kb on - strand, within EX31_RS16665 at 16.340 kb on - strand, within EX31_RS16665 at 16.473 kb on + strand, within EX31_RS16665 at 16.473 kb on + strand, within EX31_RS16665 at 16.474 kb on - strand, within EX31_RS16665 at 16.812 kb on - strand at 16.990 kb on - strand, within EX31_RS16670 at 17.002 kb on - strand, within EX31_RS16670 at 17.051 kb on + strand, within EX31_RS16670 at 17.187 kb on + strand, within EX31_RS16670 at 17.188 kb on - strand, within EX31_RS16670 at 17.274 kb on - strand, within EX31_RS16670 at 17.395 kb on - strand, within EX31_RS16670 at 17.437 kb on - strand, within EX31_RS16670 at 17.450 kb on - strand, within EX31_RS16670 at 17.494 kb on + strand, within EX31_RS16670 at 17.674 kb on + strand, within EX31_RS16670 at 17.674 kb on + strand, within EX31_RS16670 at 17.674 kb on + strand, within EX31_RS16670 at 17.675 kb on - strand, within EX31_RS16670 at 17.675 kb on - strand, within EX31_RS16670 at 17.703 kb on - strand, within EX31_RS16670 at 17.706 kb on + strand, within EX31_RS16670 at 17.707 kb on - strand, within EX31_RS16670 at 17.707 kb on - strand, within EX31_RS16670 at 17.756 kb on + strand at 17.756 kb on + strand at 17.813 kb on - strand at 17.869 kb on - strand at 17.873 kb on - strand at 17.874 kb on + strand at 17.875 kb on - strand at 17.945 kb on + strand at 17.980 kb on + strand at 18.110 kb on + strand, within EX31_RS16675 at 18.110 kb on + strand, within EX31_RS16675 at 18.111 kb on - strand, within EX31_RS16675 at 18.111 kb on - strand, within EX31_RS16675 at 18.184 kb on - strand, within EX31_RS16675 at 18.470 kb on - strand, within EX31_RS16675 at 18.504 kb on + strand, within EX31_RS16675 at 18.621 kb on - strand at 18.622 kb on + strand at 18.622 kb on + strand at 18.623 kb on - strand at 18.623 kb on - strand at 18.623 kb on - strand at 18.700 kb on + strand at 18.701 kb on - strand at 18.701 kb on - strand at 18.701 kb on - strand at 18.701 kb on - strand at 18.743 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM remove 16,013 - EX31_RS16665 0.24 +0.3 16,016 + EX31_RS16665 0.24 -0.6 16,056 + EX31_RS16665 0.28 +0.2 16,057 - EX31_RS16665 0.29 -0.5 16,141 - EX31_RS16665 0.38 +0.7 16,141 - EX31_RS16665 0.38 -0.3 16,213 + EX31_RS16665 0.45 -0.0 16,214 - EX31_RS16665 0.46 -0.2 16,317 + EX31_RS16665 0.57 +0.5 16,339 + EX31_RS16665 0.59 +0.4 16,339 + EX31_RS16665 0.59 -1.2 16,339 + EX31_RS16665 0.59 -0.5 16,340 - EX31_RS16665 0.59 -0.0 16,340 - EX31_RS16665 0.59 +0.7 16,473 + EX31_RS16665 0.73 +1.2 16,473 + EX31_RS16665 0.73 +1.0 16,474 - EX31_RS16665 0.74 -1.5 16,812 - +0.6 16,990 - EX31_RS16670 0.20 +0.4 17,002 - EX31_RS16670 0.21 +0.4 17,051 + EX31_RS16670 0.26 -0.9 17,187 + EX31_RS16670 0.39 -1.0 17,188 - EX31_RS16670 0.39 -0.0 17,274 - EX31_RS16670 0.47 -0.9 17,395 - EX31_RS16670 0.58 +0.4 17,437 - EX31_RS16670 0.62 -1.7 17,450 - EX31_RS16670 0.63 +0.0 17,494 + EX31_RS16670 0.68 -1.0 17,674 + EX31_RS16670 0.85 -1.1 17,674 + EX31_RS16670 0.85 -0.8 17,674 + EX31_RS16670 0.85 -0.6 17,675 - EX31_RS16670 0.85 -1.9 17,675 - EX31_RS16670 0.85 +1.3 17,703 - EX31_RS16670 0.87 -0.9 17,706 + EX31_RS16670 0.88 -1.1 17,707 - EX31_RS16670 0.88 +0.1 17,707 - EX31_RS16670 0.88 -0.3 17,756 + -0.6 17,756 + -0.4 17,813 - -1.0 17,869 - -1.1 17,873 - -0.7 17,874 + +0.4 17,875 - +0.1 17,945 + -0.9 17,980 + +0.2 18,110 + EX31_RS16675 0.23 -0.4 18,110 + EX31_RS16675 0.23 +0.1 18,111 - EX31_RS16675 0.23 -1.5 18,111 - EX31_RS16675 0.23 +0.8 18,184 - EX31_RS16675 0.33 -1.2 18,470 - EX31_RS16675 0.71 -0.3 18,504 + EX31_RS16675 0.76 -0.8 18,621 - -2.1 18,622 + +0.0 18,622 + +0.3 18,623 - -0.8 18,623 - +1.2 18,623 - +1.3 18,700 + +0.6 18,701 - -1.6 18,701 - -0.1 18,701 - -0.7 18,701 - -1.0 18,743 + +0.0
Or see this region's nucleotide sequence