Experiment: NL-CCM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS15970 and EX31_RS15975 are separated by 128 nucleotides EX31_RS15975 and EX31_RS15980 are separated by 25 nucleotides EX31_RS15980 and EX31_RS15985 are separated by 75 nucleotides
EX31_RS15970: EX31_RS15970 - DNA-protecting protein DprA, at 3,526 to 4,695
_RS15970
EX31_RS15975: EX31_RS15975 - peptide deformylase, at 4,824 to 5,336
_RS15975
EX31_RS15980: EX31_RS15980 - methionyl-tRNA formyltransferase, at 5,362 to 6,297
_RS15980
EX31_RS15985: EX31_RS15985 - 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB, at 6,373 to 7,662
_RS15985
Position (kb) 5
6
7 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4.366 kb on + strand, within EX31_RS15970 at 4.366 kb on + strand, within EX31_RS15970 at 4.366 kb on + strand, within EX31_RS15970 at 4.367 kb on - strand, within EX31_RS15970 at 4.367 kb on - strand, within EX31_RS15970 at 4.367 kb on - strand, within EX31_RS15970 at 4.367 kb on - strand, within EX31_RS15970 at 4.379 kb on - strand, within EX31_RS15970 at 4.379 kb on - strand, within EX31_RS15970 at 4.379 kb on - strand, within EX31_RS15970 at 4.384 kb on + strand, within EX31_RS15970 at 4.385 kb on - strand, within EX31_RS15970 at 4.429 kb on + strand, within EX31_RS15970 at 4.429 kb on + strand, within EX31_RS15970 at 4.429 kb on + strand, within EX31_RS15970 at 4.430 kb on - strand, within EX31_RS15970 at 4.430 kb on - strand, within EX31_RS15970 at 4.438 kb on + strand, within EX31_RS15970 at 4.438 kb on + strand, within EX31_RS15970 at 4.439 kb on - strand, within EX31_RS15970 at 4.473 kb on + strand, within EX31_RS15970 at 4.473 kb on + strand, within EX31_RS15970 at 4.474 kb on - strand, within EX31_RS15970 at 4.474 kb on - strand, within EX31_RS15970 at 4.474 kb on - strand, within EX31_RS15970 at 4.474 kb on - strand, within EX31_RS15970 at 4.474 kb on - strand, within EX31_RS15970 at 4.516 kb on + strand, within EX31_RS15970 at 4.530 kb on + strand, within EX31_RS15970 at 4.530 kb on + strand, within EX31_RS15970 at 4.530 kb on + strand, within EX31_RS15970 at 4.530 kb on + strand, within EX31_RS15970 at 4.531 kb on - strand, within EX31_RS15970 at 4.531 kb on - strand, within EX31_RS15970 at 4.531 kb on - strand, within EX31_RS15970 at 4.531 kb on - strand, within EX31_RS15970 at 4.533 kb on + strand, within EX31_RS15970 at 4.534 kb on - strand, within EX31_RS15970 at 4.534 kb on - strand, within EX31_RS15970 at 4.579 kb on + strand at 4.595 kb on + strand at 4.595 kb on + strand at 4.595 kb on + strand at 4.596 kb on - strand at 4.596 kb on - strand at 4.612 kb on + strand at 4.657 kb on + strand at 4.658 kb on - strand at 4.672 kb on + strand at 4.673 kb on - strand at 4.673 kb on - strand at 4.673 kb on - strand at 4.673 kb on - strand at 4.687 kb on + strand at 4.687 kb on + strand at 4.687 kb on + strand at 4.687 kb on + strand at 4.688 kb on - strand at 4.688 kb on - strand at 4.688 kb on - strand at 4.731 kb on + strand at 4.732 kb on - strand at 4.732 kb on - strand at 4.732 kb on - strand at 4.732 kb on - strand at 4.732 kb on - strand at 4.773 kb on + strand at 4.778 kb on + strand at 4.778 kb on + strand at 4.785 kb on + strand at 4.785 kb on + strand at 4.785 kb on + strand at 4.785 kb on + strand at 4.785 kb on + strand at 4.785 kb on + strand at 4.785 kb on + strand at 4.785 kb on + strand at 4.785 kb on + strand at 4.785 kb on + strand at 4.785 kb on + strand at 4.785 kb on + strand at 4.785 kb on + strand at 4.785 kb on + strand at 4.787 kb on + strand at 4.787 kb on + strand at 4.787 kb on + strand at 4.787 kb on + strand at 4.787 kb on + strand at 4.787 kb on + strand at 4.787 kb on + strand at 4.787 kb on + strand at 4.787 kb on + strand at 4.787 kb on + strand at 4.787 kb on + strand at 4.787 kb on + strand at 4.787 kb on + strand at 4.787 kb on + strand at 4.787 kb on + strand at 4.787 kb on + strand at 4.787 kb on + strand at 4.787 kb on + strand at 4.787 kb on + strand at 4.787 kb on + strand at 4.787 kb on + strand at 4.787 kb on + strand at 4.789 kb on + strand at 4.789 kb on + strand at 4.789 kb on + strand at 4.789 kb on + strand at 4.789 kb on + strand at 4.789 kb on + strand at 4.789 kb on + strand at 4.789 kb on + strand at 4.789 kb on + strand at 5.259 kb on + strand, within EX31_RS15975 at 5.259 kb on + strand, within EX31_RS15975 at 5.259 kb on + strand, within EX31_RS15975 at 5.259 kb on + strand, within EX31_RS15975 at 5.285 kb on + strand at 5.334 kb on + strand at 5.337 kb on + strand at 5.337 kb on + strand at 5.345 kb on + strand at 6.301 kb on + strand at 6.301 kb on + strand at 6.332 kb on + strand at 6.372 kb on + strand at 6.385 kb on + strand at 6.385 kb on + strand at 6.385 kb on + strand at 6.385 kb on + strand at 6.385 kb on + strand at 6.385 kb on + strand at 6.386 kb on - strand at 6.387 kb on + strand at 6.522 kb on + strand, within EX31_RS15985 at 6.589 kb on - strand, within EX31_RS15985 at 6.607 kb on + strand, within EX31_RS15985 at 6.607 kb on + strand, within EX31_RS15985 at 6.607 kb on + strand, within EX31_RS15985 at 6.607 kb on + strand, within EX31_RS15985 at 6.607 kb on + strand, within EX31_RS15985 at 6.607 kb on + strand, within EX31_RS15985 at 6.612 kb on - strand, within EX31_RS15985 at 6.628 kb on + strand, within EX31_RS15985 at 6.628 kb on + strand, within EX31_RS15985 at 6.713 kb on + strand, within EX31_RS15985 at 6.713 kb on + strand, within EX31_RS15985 at 6.861 kb on + strand, within EX31_RS15985 at 6.861 kb on + strand, within EX31_RS15985 at 6.861 kb on + strand, within EX31_RS15985 at 6.861 kb on + strand, within EX31_RS15985 at 6.876 kb on + strand, within EX31_RS15985 at 6.934 kb on + strand, within EX31_RS15985 at 6.935 kb on - strand, within EX31_RS15985 at 6.938 kb on + strand, within EX31_RS15985 at 6.938 kb on + strand, within EX31_RS15985 at 6.938 kb on + strand, within EX31_RS15985 at 6.938 kb on + strand, within EX31_RS15985 at 6.938 kb on + strand, within EX31_RS15985 at 6.947 kb on + strand, within EX31_RS15985 at 6.956 kb on + strand, within EX31_RS15985 at 7.130 kb on + strand, within EX31_RS15985 at 7.130 kb on + strand, within EX31_RS15985 at 7.130 kb on + strand, within EX31_RS15985 at 7.130 kb on + strand, within EX31_RS15985 at 7.130 kb on + strand, within EX31_RS15985 at 7.130 kb on + strand, within EX31_RS15985 at 7.130 kb on + strand, within EX31_RS15985 at 7.130 kb on + strand, within EX31_RS15985 at 7.130 kb on + strand, within EX31_RS15985 at 7.130 kb on + strand, within EX31_RS15985 at 7.131 kb on - strand, within EX31_RS15985 at 7.131 kb on - strand, within EX31_RS15985 at 7.131 kb on - strand, within EX31_RS15985 at 7.161 kb on + strand, within EX31_RS15985 at 7.179 kb on + strand, within EX31_RS15985
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM remove 4,366 + EX31_RS15970 0.72 +0.3 4,366 + EX31_RS15970 0.72 +0.2 4,366 + EX31_RS15970 0.72 -0.2 4,367 - EX31_RS15970 0.72 +0.2 4,367 - EX31_RS15970 0.72 +1.0 4,367 - EX31_RS15970 0.72 -0.7 4,367 - EX31_RS15970 0.72 +0.2 4,379 - EX31_RS15970 0.73 +0.3 4,379 - EX31_RS15970 0.73 -1.0 4,379 - EX31_RS15970 0.73 -0.5 4,384 + EX31_RS15970 0.73 -0.8 4,385 - EX31_RS15970 0.73 +0.9 4,429 + EX31_RS15970 0.77 +0.4 4,429 + EX31_RS15970 0.77 +0.0 4,429 + EX31_RS15970 0.77 -0.5 4,430 - EX31_RS15970 0.77 +0.2 4,430 - EX31_RS15970 0.77 -0.1 4,438 + EX31_RS15970 0.78 +0.0 4,438 + EX31_RS15970 0.78 -0.8 4,439 - EX31_RS15970 0.78 -0.4 4,473 + EX31_RS15970 0.81 +0.6 4,473 + EX31_RS15970 0.81 +0.5 4,474 - EX31_RS15970 0.81 +0.3 4,474 - EX31_RS15970 0.81 +0.4 4,474 - EX31_RS15970 0.81 -0.4 4,474 - EX31_RS15970 0.81 +0.4 4,474 - EX31_RS15970 0.81 -1.2 4,516 + EX31_RS15970 0.85 +0.3 4,530 + EX31_RS15970 0.86 +1.1 4,530 + EX31_RS15970 0.86 -0.6 4,530 + EX31_RS15970 0.86 +1.2 4,530 + EX31_RS15970 0.86 +0.4 4,531 - EX31_RS15970 0.86 +0.1 4,531 - EX31_RS15970 0.86 +0.1 4,531 - EX31_RS15970 0.86 -0.7 4,531 - EX31_RS15970 0.86 -0.8 4,533 + EX31_RS15970 0.86 +0.3 4,534 - EX31_RS15970 0.86 +0.3 4,534 - EX31_RS15970 0.86 +0.5 4,579 + +0.1 4,595 + -1.0 4,595 + +0.2 4,595 + -0.1 4,596 - +0.4 4,596 - +0.7 4,612 + +0.5 4,657 + +0.5 4,658 - +0.3 4,672 + -1.0 4,673 - -0.2 4,673 - +0.5 4,673 - +1.1 4,673 - -1.2 4,687 + +0.1 4,687 + +0.5 4,687 + +0.1 4,687 + -0.4 4,688 - +0.1 4,688 - +0.0 4,688 - +0.1 4,731 + -0.3 4,732 - -1.5 4,732 - +0.1 4,732 - +0.4 4,732 - -0.0 4,732 - +0.4 4,773 + -0.3 4,778 + -0.1 4,778 + +0.1 4,785 + -0.7 4,785 + -0.4 4,785 + -0.6 4,785 + -0.5 4,785 + -0.2 4,785 + +0.1 4,785 + +0.3 4,785 + -0.3 4,785 + +0.1 4,785 + -0.7 4,785 + +0.6 4,785 + -0.0 4,785 + -0.2 4,785 + +0.5 4,787 + +0.5 4,787 + -0.2 4,787 + -0.1 4,787 + -0.1 4,787 + -0.4 4,787 + +0.4 4,787 + -0.1 4,787 + -0.1 4,787 + -0.7 4,787 + +0.1 4,787 + +0.4 4,787 + -0.2 4,787 + +0.0 4,787 + +0.7 4,787 + +0.8 4,787 + -2.1 4,787 + -0.1 4,787 + -0.5 4,787 + -0.1 4,787 + -0.2 4,787 + +0.8 4,787 + +0.2 4,789 + +0.1 4,789 + +0.1 4,789 + +1.2 4,789 + +0.9 4,789 + -0.5 4,789 + -0.1 4,789 + -0.0 4,789 + +0.6 4,789 + +0.3 5,259 + EX31_RS15975 0.85 +1.0 5,259 + EX31_RS15975 0.85 +0.2 5,259 + EX31_RS15975 0.85 +0.5 5,259 + EX31_RS15975 0.85 +2.2 5,285 + -0.0 5,334 + -0.5 5,337 + -0.4 5,337 + -0.8 5,345 + +0.0 6,301 + +0.0 6,301 + -0.1 6,332 + +0.4 6,372 + -0.3 6,385 + +0.4 6,385 + +0.6 6,385 + -0.8 6,385 + +0.8 6,385 + +0.2 6,385 + -0.6 6,386 - +1.1 6,387 + -1.9 6,522 + EX31_RS15985 0.12 -0.9 6,589 - EX31_RS15985 0.17 +1.3 6,607 + EX31_RS15985 0.18 -0.5 6,607 + EX31_RS15985 0.18 -0.4 6,607 + EX31_RS15985 0.18 -0.3 6,607 + EX31_RS15985 0.18 -1.5 6,607 + EX31_RS15985 0.18 +0.6 6,607 + EX31_RS15985 0.18 +0.1 6,612 - EX31_RS15985 0.19 +2.6 6,628 + EX31_RS15985 0.20 +0.8 6,628 + EX31_RS15985 0.20 -0.2 6,713 + EX31_RS15985 0.26 -0.7 6,713 + EX31_RS15985 0.26 -0.1 6,861 + EX31_RS15985 0.38 +0.0 6,861 + EX31_RS15985 0.38 +0.4 6,861 + EX31_RS15985 0.38 +0.5 6,861 + EX31_RS15985 0.38 -0.4 6,876 + EX31_RS15985 0.39 -0.2 6,934 + EX31_RS15985 0.43 -0.4 6,935 - EX31_RS15985 0.44 -1.5 6,938 + EX31_RS15985 0.44 -0.6 6,938 + EX31_RS15985 0.44 -0.8 6,938 + EX31_RS15985 0.44 -0.5 6,938 + EX31_RS15985 0.44 -0.0 6,938 + EX31_RS15985 0.44 +1.0 6,947 + EX31_RS15985 0.44 +0.3 6,956 + EX31_RS15985 0.45 +0.1 7,130 + EX31_RS15985 0.59 +0.5 7,130 + EX31_RS15985 0.59 -0.3 7,130 + EX31_RS15985 0.59 -0.8 7,130 + EX31_RS15985 0.59 -0.1 7,130 + EX31_RS15985 0.59 -0.0 7,130 + EX31_RS15985 0.59 -0.7 7,130 + EX31_RS15985 0.59 -0.1 7,130 + EX31_RS15985 0.59 +0.7 7,130 + EX31_RS15985 0.59 +1.1 7,130 + EX31_RS15985 0.59 +0.7 7,131 - EX31_RS15985 0.59 +1.5 7,131 - EX31_RS15985 0.59 -0.5 7,131 - EX31_RS15985 0.59 +2.5 7,161 + EX31_RS15985 0.61 -0.3 7,179 + EX31_RS15985 0.62 +0.2
Or see this region's nucleotide sequence