Strain Fitness in Rahnella sp. WP5 around EX31_RS15630

Experiment: NL-CCM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS15625 and EX31_RS15630 are separated by 415 nucleotidesEX31_RS15630 and EX31_RS15635 are separated by 126 nucleotides EX31_RS15625: EX31_RS15625 - branched-chain amino acid ABC transporter substrate-binding protein, at 22,160 to 23,284 _RS15625 EX31_RS15630: EX31_RS15630 - YgdI/YgdR family lipoprotein, at 23,700 to 23,915 _RS15630 EX31_RS15635: EX31_RS15635 - HAMP domain-containing protein, at 24,042 to 25,871 _RS15635 Position (kb) 23 24Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 22.759 kb on - strand, within EX31_RS15625at 22.815 kb on + strand, within EX31_RS15625at 22.815 kb on + strand, within EX31_RS15625at 22.815 kb on + strand, within EX31_RS15625at 22.816 kb on - strand, within EX31_RS15625at 22.816 kb on - strand, within EX31_RS15625at 22.816 kb on - strand, within EX31_RS15625at 22.816 kb on - strand, within EX31_RS15625at 22.941 kb on + strand, within EX31_RS15625at 22.941 kb on + strand, within EX31_RS15625at 22.942 kb on - strand, within EX31_RS15625at 22.964 kb on - strand, within EX31_RS15625at 23.110 kb on + strand, within EX31_RS15625at 23.110 kb on + strand, within EX31_RS15625at 23.111 kb on - strand, within EX31_RS15625at 23.250 kb on - strandat 23.298 kb on - strandat 23.338 kb on + strandat 23.338 kb on + strandat 23.339 kb on - strandat 23.363 kb on + strandat 23.364 kb on - strandat 23.391 kb on - strandat 23.397 kb on + strandat 23.445 kb on + strandat 23.456 kb on - strandat 23.456 kb on - strandat 23.464 kb on + strandat 23.465 kb on - strandat 23.512 kb on + strandat 23.513 kb on - strandat 23.514 kb on + strandat 23.514 kb on + strandat 23.514 kb on + strandat 23.514 kb on + strandat 23.514 kb on + strandat 23.514 kb on + strandat 23.514 kb on + strandat 23.514 kb on + strandat 23.514 kb on + strandat 23.514 kb on + strandat 23.514 kb on + strandat 23.514 kb on + strandat 23.515 kb on - strandat 23.515 kb on - strandat 23.515 kb on - strandat 23.515 kb on - strandat 23.612 kb on + strandat 23.662 kb on - strandat 23.664 kb on + strandat 23.691 kb on + strandat 23.710 kb on + strandat 23.847 kb on + strand, within EX31_RS15630at 23.847 kb on + strand, within EX31_RS15630at 23.868 kb on + strand, within EX31_RS15630at 23.891 kb on + strand, within EX31_RS15630at 23.892 kb on - strand, within EX31_RS15630at 23.913 kb on + strandat 23.938 kb on + strandat 23.938 kb on + strandat 23.975 kb on + strandat 23.992 kb on + strandat 23.992 kb on + strandat 23.992 kb on + strandat 23.992 kb on + strandat 23.992 kb on + strandat 23.992 kb on + strandat 23.992 kb on + strandat 23.992 kb on + strandat 23.993 kb on - strandat 23.993 kb on - strandat 24.053 kb on + strandat 24.180 kb on + strandat 24.181 kb on - strandat 24.249 kb on - strand, within EX31_RS15635at 24.264 kb on + strand, within EX31_RS15635at 24.265 kb on - strand, within EX31_RS15635at 24.265 kb on - strand, within EX31_RS15635at 24.265 kb on - strand, within EX31_RS15635at 24.265 kb on - strand, within EX31_RS15635at 24.265 kb on - strand, within EX31_RS15635at 24.265 kb on - strand, within EX31_RS15635at 24.265 kb on - strand, within EX31_RS15635at 24.315 kb on - strand, within EX31_RS15635at 24.339 kb on + strand, within EX31_RS15635at 24.348 kb on + strand, within EX31_RS15635at 24.349 kb on - strand, within EX31_RS15635at 24.349 kb on - strand, within EX31_RS15635at 24.349 kb on - strand, within EX31_RS15635at 24.471 kb on - strand, within EX31_RS15635at 24.491 kb on + strand, within EX31_RS15635at 24.491 kb on + strand, within EX31_RS15635at 24.495 kb on - strand, within EX31_RS15635at 24.536 kb on + strand, within EX31_RS15635at 24.549 kb on - strand, within EX31_RS15635at 24.549 kb on - strand, within EX31_RS15635at 24.603 kb on - strand, within EX31_RS15635at 24.663 kb on + strand, within EX31_RS15635at 24.738 kb on - strand, within EX31_RS15635at 24.791 kb on + strand, within EX31_RS15635at 24.792 kb on - strand, within EX31_RS15635at 24.803 kb on + strand, within EX31_RS15635at 24.803 kb on + strand, within EX31_RS15635at 24.832 kb on - strand, within EX31_RS15635at 24.832 kb on - strand, within EX31_RS15635at 24.832 kb on - strand, within EX31_RS15635at 24.873 kb on - strand, within EX31_RS15635at 24.873 kb on - strand, within EX31_RS15635at 24.888 kb on + strand, within EX31_RS15635

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM
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22,759 - EX31_RS15625 0.53 +0.4
22,815 + EX31_RS15625 0.58 -0.5
22,815 + EX31_RS15625 0.58 -0.2
22,815 + EX31_RS15625 0.58 +0.9
22,816 - EX31_RS15625 0.58 +0.4
22,816 - EX31_RS15625 0.58 +0.3
22,816 - EX31_RS15625 0.58 +0.6
22,816 - EX31_RS15625 0.58 -1.1
22,941 + EX31_RS15625 0.69 -0.7
22,941 + EX31_RS15625 0.69 +0.3
22,942 - EX31_RS15625 0.70 +0.2
22,964 - EX31_RS15625 0.71 +0.1
23,110 + EX31_RS15625 0.84 +0.3
23,110 + EX31_RS15625 0.84 -0.7
23,111 - EX31_RS15625 0.85 +0.3
23,250 - -1.7
23,298 - +1.1
23,338 + -1.3
23,338 + +0.0
23,339 - -0.0
23,363 + -1.1
23,364 - -0.2
23,391 - +0.4
23,397 + -0.1
23,445 + +0.2
23,456 - -1.1
23,456 - -0.4
23,464 + +1.0
23,465 - -0.3
23,512 + -0.8
23,513 - +0.2
23,514 + -0.9
23,514 + -0.4
23,514 + +0.5
23,514 + +0.9
23,514 + -0.5
23,514 + -0.3
23,514 + -1.1
23,514 + +0.0
23,514 + -1.2
23,514 + -0.8
23,514 + -0.5
23,514 + +0.3
23,515 - -1.4
23,515 - +0.5
23,515 - -0.0
23,515 - +1.0
23,612 + -1.6
23,662 - -1.0
23,664 + +0.2
23,691 + -0.3
23,710 + +0.0
23,847 + EX31_RS15630 0.68 -0.9
23,847 + EX31_RS15630 0.68 +0.0
23,868 + EX31_RS15630 0.78 -1.9
23,891 + EX31_RS15630 0.88 -0.6
23,892 - EX31_RS15630 0.89 +0.4
23,913 + -0.8
23,938 + -0.6
23,938 + +0.3
23,975 + -0.8
23,992 + +0.5
23,992 + +0.6
23,992 + -0.3
23,992 + +0.8
23,992 + -3.2
23,992 + +1.9
23,992 + +1.1
23,992 + -1.1
23,993 - +0.5
23,993 - -0.7
24,053 + -2.6
24,180 + +0.9
24,181 - +0.1
24,249 - EX31_RS15635 0.11 +0.3
24,264 + EX31_RS15635 0.12 -1.2
24,265 - EX31_RS15635 0.12 +0.4
24,265 - EX31_RS15635 0.12 -1.0
24,265 - EX31_RS15635 0.12 +0.1
24,265 - EX31_RS15635 0.12 +0.3
24,265 - EX31_RS15635 0.12 -0.5
24,265 - EX31_RS15635 0.12 +0.5
24,265 - EX31_RS15635 0.12 -0.8
24,315 - EX31_RS15635 0.15 +0.7
24,339 + EX31_RS15635 0.16 -0.2
24,348 + EX31_RS15635 0.17 -1.7
24,349 - EX31_RS15635 0.17 -0.3
24,349 - EX31_RS15635 0.17 +1.7
24,349 - EX31_RS15635 0.17 +1.3
24,471 - EX31_RS15635 0.23 -0.4
24,491 + EX31_RS15635 0.25 +0.4
24,491 + EX31_RS15635 0.25 +1.3
24,495 - EX31_RS15635 0.25 +0.2
24,536 + EX31_RS15635 0.27 -0.1
24,549 - EX31_RS15635 0.28 +0.1
24,549 - EX31_RS15635 0.28 +1.0
24,603 - EX31_RS15635 0.31 +0.1
24,663 + EX31_RS15635 0.34 +1.5
24,738 - EX31_RS15635 0.38 -0.2
24,791 + EX31_RS15635 0.41 +0.1
24,792 - EX31_RS15635 0.41 -0.2
24,803 + EX31_RS15635 0.42 +0.4
24,803 + EX31_RS15635 0.42 +0.3
24,832 - EX31_RS15635 0.43 -0.1
24,832 - EX31_RS15635 0.43 -0.5
24,832 - EX31_RS15635 0.43 +0.6
24,873 - EX31_RS15635 0.45 +0.3
24,873 - EX31_RS15635 0.45 +0.6
24,888 + EX31_RS15635 0.46 -0.0

Or see this region's nucleotide sequence