Strain Fitness in Rahnella sp. WP5 around EX31_RS14020

Experiment: NL-CCM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS14010 and EX31_RS14015 overlap by 1 nucleotidesEX31_RS14015 and EX31_RS14020 overlap by 1 nucleotidesEX31_RS14020 and EX31_RS14025 are separated by 348 nucleotides EX31_RS14010: EX31_RS14010 - bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA, at 65,303 to 67,285 _RS14010 EX31_RS14015: EX31_RS14015 - undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase, at 67,285 to 68,265 _RS14015 EX31_RS14020: EX31_RS14020 - UDP-4-amino-4-deoxy-L-arabinose aminotransferase, at 68,265 to 69,407 _RS14020 EX31_RS14025: EX31_RS14025 - vitamin B12 ABC transporter ATP-binding protein BtuD, at 69,756 to 70,505 _RS14025 Position (kb) 68 69 70Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 67.287 kb on - strandat 67.344 kb on - strandat 67.371 kb on - strandat 67.371 kb on - strandat 67.385 kb on + strand, within EX31_RS14015at 67.385 kb on + strand, within EX31_RS14015at 67.386 kb on - strand, within EX31_RS14015at 67.386 kb on - strand, within EX31_RS14015at 67.386 kb on - strand, within EX31_RS14015at 67.386 kb on - strand, within EX31_RS14015at 67.386 kb on - strand, within EX31_RS14015at 67.386 kb on - strand, within EX31_RS14015at 67.386 kb on - strand, within EX31_RS14015at 67.432 kb on - strand, within EX31_RS14015at 67.432 kb on - strand, within EX31_RS14015at 67.432 kb on - strand, within EX31_RS14015at 67.432 kb on - strand, within EX31_RS14015at 67.432 kb on - strand, within EX31_RS14015at 67.432 kb on - strand, within EX31_RS14015at 67.432 kb on - strand, within EX31_RS14015at 67.432 kb on - strand, within EX31_RS14015at 67.432 kb on - strand, within EX31_RS14015at 67.432 kb on - strand, within EX31_RS14015at 67.436 kb on - strand, within EX31_RS14015at 67.436 kb on - strand, within EX31_RS14015at 67.601 kb on + strand, within EX31_RS14015at 67.602 kb on - strand, within EX31_RS14015at 67.602 kb on - strand, within EX31_RS14015at 67.602 kb on - strand, within EX31_RS14015at 67.602 kb on - strand, within EX31_RS14015at 67.602 kb on - strand, within EX31_RS14015at 67.602 kb on - strand, within EX31_RS14015at 67.602 kb on - strand, within EX31_RS14015at 67.602 kb on - strand, within EX31_RS14015at 67.602 kb on - strand, within EX31_RS14015at 67.602 kb on - strand, within EX31_RS14015at 67.602 kb on - strand, within EX31_RS14015at 67.632 kb on - strand, within EX31_RS14015at 67.632 kb on - strand, within EX31_RS14015at 67.679 kb on - strand, within EX31_RS14015at 67.679 kb on - strand, within EX31_RS14015at 67.679 kb on - strand, within EX31_RS14015at 67.710 kb on + strand, within EX31_RS14015at 67.711 kb on - strand, within EX31_RS14015at 67.717 kb on - strand, within EX31_RS14015at 67.717 kb on - strand, within EX31_RS14015at 67.723 kb on - strand, within EX31_RS14015at 67.723 kb on - strand, within EX31_RS14015at 67.747 kb on - strand, within EX31_RS14015at 67.747 kb on - strand, within EX31_RS14015at 67.747 kb on - strand, within EX31_RS14015at 67.747 kb on - strand, within EX31_RS14015at 67.782 kb on + strand, within EX31_RS14015at 67.782 kb on + strand, within EX31_RS14015at 67.783 kb on - strand, within EX31_RS14015at 67.783 kb on - strand, within EX31_RS14015at 67.783 kb on - strand, within EX31_RS14015at 67.783 kb on - strand, within EX31_RS14015at 67.791 kb on - strand, within EX31_RS14015at 67.830 kb on + strand, within EX31_RS14015at 67.830 kb on + strand, within EX31_RS14015at 67.831 kb on - strand, within EX31_RS14015at 67.831 kb on - strand, within EX31_RS14015at 67.831 kb on - strand, within EX31_RS14015at 67.855 kb on - strand, within EX31_RS14015at 67.886 kb on - strand, within EX31_RS14015at 67.886 kb on - strand, within EX31_RS14015at 67.886 kb on - strand, within EX31_RS14015at 67.886 kb on - strand, within EX31_RS14015at 67.886 kb on - strand, within EX31_RS14015at 67.974 kb on + strand, within EX31_RS14015at 67.975 kb on - strand, within EX31_RS14015at 67.975 kb on - strand, within EX31_RS14015at 67.975 kb on - strand, within EX31_RS14015at 67.994 kb on - strand, within EX31_RS14015at 67.994 kb on - strand, within EX31_RS14015at 67.994 kb on - strand, within EX31_RS14015at 67.994 kb on - strand, within EX31_RS14015at 67.994 kb on - strand, within EX31_RS14015at 67.994 kb on - strand, within EX31_RS14015at 67.994 kb on - strand, within EX31_RS14015at 68.002 kb on - strand, within EX31_RS14015at 68.034 kb on - strand, within EX31_RS14015at 68.058 kb on + strand, within EX31_RS14015at 68.058 kb on + strand, within EX31_RS14015at 68.059 kb on - strand, within EX31_RS14015at 68.059 kb on - strand, within EX31_RS14015at 68.144 kb on + strand, within EX31_RS14015at 68.145 kb on - strand, within EX31_RS14015at 68.156 kb on - strand, within EX31_RS14015at 68.216 kb on + strandat 68.217 kb on - strandat 68.242 kb on - strandat 68.256 kb on - strandat 68.256 kb on - strandat 68.328 kb on - strandat 68.353 kb on - strandat 68.353 kb on - strandat 68.443 kb on - strand, within EX31_RS14020at 68.532 kb on + strand, within EX31_RS14020at 68.533 kb on - strand, within EX31_RS14020at 68.533 kb on - strand, within EX31_RS14020at 68.533 kb on - strand, within EX31_RS14020at 68.533 kb on - strand, within EX31_RS14020at 68.533 kb on - strand, within EX31_RS14020at 68.533 kb on - strand, within EX31_RS14020at 68.533 kb on - strand, within EX31_RS14020at 68.533 kb on - strand, within EX31_RS14020at 68.533 kb on - strand, within EX31_RS14020at 68.533 kb on - strand, within EX31_RS14020at 68.533 kb on - strand, within EX31_RS14020at 68.533 kb on - strand, within EX31_RS14020at 68.533 kb on - strand, within EX31_RS14020at 68.533 kb on - strand, within EX31_RS14020at 68.566 kb on - strand, within EX31_RS14020at 68.596 kb on - strand, within EX31_RS14020at 68.608 kb on + strand, within EX31_RS14020at 68.658 kb on - strand, within EX31_RS14020at 68.701 kb on + strand, within EX31_RS14020at 68.702 kb on - strand, within EX31_RS14020at 68.702 kb on - strand, within EX31_RS14020at 68.702 kb on - strand, within EX31_RS14020at 68.702 kb on - strand, within EX31_RS14020at 68.705 kb on + strand, within EX31_RS14020at 68.706 kb on - strand, within EX31_RS14020at 68.800 kb on - strand, within EX31_RS14020at 68.859 kb on - strand, within EX31_RS14020at 68.920 kb on + strand, within EX31_RS14020at 68.976 kb on - strand, within EX31_RS14020at 68.976 kb on - strand, within EX31_RS14020at 68.976 kb on - strand, within EX31_RS14020at 68.986 kb on + strand, within EX31_RS14020at 68.986 kb on + strand, within EX31_RS14020at 68.987 kb on - strand, within EX31_RS14020at 68.987 kb on - strand, within EX31_RS14020at 69.263 kb on + strand, within EX31_RS14020at 69.264 kb on - strand, within EX31_RS14020at 69.264 kb on - strand, within EX31_RS14020at 69.264 kb on - strand, within EX31_RS14020at 69.264 kb on - strand, within EX31_RS14020at 69.264 kb on - strand, within EX31_RS14020at 69.264 kb on - strand, within EX31_RS14020at 69.264 kb on - strand, within EX31_RS14020at 69.264 kb on - strand, within EX31_RS14020at 69.264 kb on - strand, within EX31_RS14020at 69.264 kb on - strand, within EX31_RS14020at 69.264 kb on - strand, within EX31_RS14020at 69.264 kb on - strand, within EX31_RS14020at 69.337 kb on - strandat 69.358 kb on - strandat 69.408 kb on + strandat 69.427 kb on - strandat 69.427 kb on - strandat 69.427 kb on - strandat 69.430 kb on + strandat 69.431 kb on - strandat 69.446 kb on - strandat 69.446 kb on - strandat 69.460 kb on + strandat 69.466 kb on + strandat 69.466 kb on + strandat 69.467 kb on - strandat 69.488 kb on + strandat 69.489 kb on - strandat 69.498 kb on - strandat 69.498 kb on - strandat 69.527 kb on + strandat 69.725 kb on - strandat 69.728 kb on - strandat 69.728 kb on - strandat 69.730 kb on + strandat 69.730 kb on + strandat 69.731 kb on - strandat 69.737 kb on - strandat 69.815 kb on - strandat 69.829 kb on - strandat 69.887 kb on + strand, within EX31_RS14025at 69.887 kb on + strand, within EX31_RS14025at 69.888 kb on - strand, within EX31_RS14025at 69.888 kb on - strand, within EX31_RS14025at 70.049 kb on + strand, within EX31_RS14025at 70.080 kb on + strand, within EX31_RS14025at 70.161 kb on + strand, within EX31_RS14025at 70.161 kb on + strand, within EX31_RS14025at 70.162 kb on - strand, within EX31_RS14025at 70.162 kb on - strand, within EX31_RS14025at 70.162 kb on - strand, within EX31_RS14025at 70.162 kb on - strand, within EX31_RS14025at 70.281 kb on + strand, within EX31_RS14025at 70.371 kb on - strand, within EX31_RS14025

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM
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67,287 - +1.1
67,344 - +0.6
67,371 - +0.7
67,371 - +0.2
67,385 + EX31_RS14015 0.10 +1.9
67,385 + EX31_RS14015 0.10 +0.8
67,386 - EX31_RS14015 0.10 +1.3
67,386 - EX31_RS14015 0.10 +0.8
67,386 - EX31_RS14015 0.10 +0.6
67,386 - EX31_RS14015 0.10 +0.8
67,386 - EX31_RS14015 0.10 -0.1
67,386 - EX31_RS14015 0.10 -0.3
67,386 - EX31_RS14015 0.10 +0.2
67,432 - EX31_RS14015 0.15 +0.6
67,432 - EX31_RS14015 0.15 +0.1
67,432 - EX31_RS14015 0.15 +0.8
67,432 - EX31_RS14015 0.15 +0.4
67,432 - EX31_RS14015 0.15 +1.1
67,432 - EX31_RS14015 0.15 -0.9
67,432 - EX31_RS14015 0.15 +1.7
67,432 - EX31_RS14015 0.15 +1.4
67,432 - EX31_RS14015 0.15 +1.1
67,432 - EX31_RS14015 0.15 +0.4
67,436 - EX31_RS14015 0.15 +0.5
67,436 - EX31_RS14015 0.15 +0.0
67,601 + EX31_RS14015 0.32 +0.7
67,602 - EX31_RS14015 0.32 +0.9
67,602 - EX31_RS14015 0.32 +0.3
67,602 - EX31_RS14015 0.32 +0.6
67,602 - EX31_RS14015 0.32 +0.4
67,602 - EX31_RS14015 0.32 -0.0
67,602 - EX31_RS14015 0.32 +0.7
67,602 - EX31_RS14015 0.32 -0.1
67,602 - EX31_RS14015 0.32 +0.8
67,602 - EX31_RS14015 0.32 +0.5
67,602 - EX31_RS14015 0.32 +0.8
67,602 - EX31_RS14015 0.32 +0.5
67,632 - EX31_RS14015 0.35 +0.8
67,632 - EX31_RS14015 0.35 -1.2
67,679 - EX31_RS14015 0.40 +0.2
67,679 - EX31_RS14015 0.40 +0.3
67,679 - EX31_RS14015 0.40 +0.4
67,710 + EX31_RS14015 0.43 +0.8
67,711 - EX31_RS14015 0.43 +0.8
67,717 - EX31_RS14015 0.44 +1.2
67,717 - EX31_RS14015 0.44 +0.2
67,723 - EX31_RS14015 0.45 +0.5
67,723 - EX31_RS14015 0.45 +0.6
67,747 - EX31_RS14015 0.47 +0.8
67,747 - EX31_RS14015 0.47 +0.7
67,747 - EX31_RS14015 0.47 -0.1
67,747 - EX31_RS14015 0.47 +0.5
67,782 + EX31_RS14015 0.51 +0.0
67,782 + EX31_RS14015 0.51 +0.6
67,783 - EX31_RS14015 0.51 +1.2
67,783 - EX31_RS14015 0.51 +0.3
67,783 - EX31_RS14015 0.51 +0.3
67,783 - EX31_RS14015 0.51 +0.4
67,791 - EX31_RS14015 0.52 +0.9
67,830 + EX31_RS14015 0.56 +1.6
67,830 + EX31_RS14015 0.56 +0.7
67,831 - EX31_RS14015 0.56 +0.8
67,831 - EX31_RS14015 0.56 -0.6
67,831 - EX31_RS14015 0.56 +0.5
67,855 - EX31_RS14015 0.58 +0.3
67,886 - EX31_RS14015 0.61 +0.5
67,886 - EX31_RS14015 0.61 +0.2
67,886 - EX31_RS14015 0.61 +0.7
67,886 - EX31_RS14015 0.61 +0.1
67,886 - EX31_RS14015 0.61 +0.4
67,974 + EX31_RS14015 0.70 -0.1
67,975 - EX31_RS14015 0.70 +0.5
67,975 - EX31_RS14015 0.70 +1.4
67,975 - EX31_RS14015 0.70 +1.0
67,994 - EX31_RS14015 0.72 +0.8
67,994 - EX31_RS14015 0.72 +1.8
67,994 - EX31_RS14015 0.72 +0.4
67,994 - EX31_RS14015 0.72 +0.6
67,994 - EX31_RS14015 0.72 -0.2
67,994 - EX31_RS14015 0.72 +1.0
67,994 - EX31_RS14015 0.72 +0.1
68,002 - EX31_RS14015 0.73 -0.2
68,034 - EX31_RS14015 0.76 +0.6
68,058 + EX31_RS14015 0.79 +2.0
68,058 + EX31_RS14015 0.79 +2.1
68,059 - EX31_RS14015 0.79 +0.6
68,059 - EX31_RS14015 0.79 +1.1
68,144 + EX31_RS14015 0.88 -0.5
68,145 - EX31_RS14015 0.88 +0.5
68,156 - EX31_RS14015 0.89 +0.1
68,216 + +0.9
68,217 - +0.4
68,242 - -0.4
68,256 - +0.5
68,256 - -0.3
68,328 - +1.5
68,353 - +0.3
68,353 - -0.4
68,443 - EX31_RS14020 0.16 +0.3
68,532 + EX31_RS14020 0.23 -0.4
68,533 - EX31_RS14020 0.23 -0.7
68,533 - EX31_RS14020 0.23 +0.8
68,533 - EX31_RS14020 0.23 +0.3
68,533 - EX31_RS14020 0.23 +0.6
68,533 - EX31_RS14020 0.23 +1.2
68,533 - EX31_RS14020 0.23 +1.0
68,533 - EX31_RS14020 0.23 +0.2
68,533 - EX31_RS14020 0.23 +0.3
68,533 - EX31_RS14020 0.23 +0.6
68,533 - EX31_RS14020 0.23 +1.1
68,533 - EX31_RS14020 0.23 +1.6
68,533 - EX31_RS14020 0.23 -0.2
68,533 - EX31_RS14020 0.23 +1.4
68,533 - EX31_RS14020 0.23 +0.4
68,566 - EX31_RS14020 0.26 +0.8
68,596 - EX31_RS14020 0.29 +0.3
68,608 + EX31_RS14020 0.30 +2.2
68,658 - EX31_RS14020 0.34 +0.4
68,701 + EX31_RS14020 0.38 +0.8
68,702 - EX31_RS14020 0.38 +0.3
68,702 - EX31_RS14020 0.38 +0.1
68,702 - EX31_RS14020 0.38 +0.7
68,702 - EX31_RS14020 0.38 +0.1
68,705 + EX31_RS14020 0.38 +0.4
68,706 - EX31_RS14020 0.39 +0.2
68,800 - EX31_RS14020 0.47 +1.0
68,859 - EX31_RS14020 0.52 +0.7
68,920 + EX31_RS14020 0.57 +0.1
68,976 - EX31_RS14020 0.62 +0.3
68,976 - EX31_RS14020 0.62 +0.6
68,976 - EX31_RS14020 0.62 +0.4
68,986 + EX31_RS14020 0.63 +1.4
68,986 + EX31_RS14020 0.63 +1.5
68,987 - EX31_RS14020 0.63 +0.6
68,987 - EX31_RS14020 0.63 +0.6
69,263 + EX31_RS14020 0.87 +0.1
69,264 - EX31_RS14020 0.87 -0.2
69,264 - EX31_RS14020 0.87 +1.0
69,264 - EX31_RS14020 0.87 -0.2
69,264 - EX31_RS14020 0.87 -0.9
69,264 - EX31_RS14020 0.87 +1.0
69,264 - EX31_RS14020 0.87 +0.6
69,264 - EX31_RS14020 0.87 +0.6
69,264 - EX31_RS14020 0.87 +0.9
69,264 - EX31_RS14020 0.87 -0.8
69,264 - EX31_RS14020 0.87 +1.1
69,264 - EX31_RS14020 0.87 +1.2
69,264 - EX31_RS14020 0.87 -0.3
69,337 - +0.7
69,358 - +0.5
69,408 + -0.9
69,427 - -1.0
69,427 - -0.3
69,427 - -1.1
69,430 + +0.2
69,431 - -1.1
69,446 - +0.5
69,446 - -0.2
69,460 + +0.5
69,466 + +0.8
69,466 + +0.5
69,467 - +0.8
69,488 + -1.0
69,489 - +0.3
69,498 - +0.8
69,498 - -3.0
69,527 + -1.4
69,725 - -0.2
69,728 - -0.8
69,728 - -1.6
69,730 + -0.5
69,730 + -0.5
69,731 - -2.1
69,737 - +0.2
69,815 - -1.0
69,829 - +0.5
69,887 + EX31_RS14025 0.17 +0.0
69,887 + EX31_RS14025 0.17 -0.2
69,888 - EX31_RS14025 0.18 -0.1
69,888 - EX31_RS14025 0.18 -1.5
70,049 + EX31_RS14025 0.39 +0.4
70,080 + EX31_RS14025 0.43 +0.0
70,161 + EX31_RS14025 0.54 +0.1
70,161 + EX31_RS14025 0.54 +0.8
70,162 - EX31_RS14025 0.54 +0.1
70,162 - EX31_RS14025 0.54 -0.1
70,162 - EX31_RS14025 0.54 +0.2
70,162 - EX31_RS14025 0.54 +0.1
70,281 + EX31_RS14025 0.70 +0.7
70,371 - EX31_RS14025 0.82 +0.3

Or see this region's nucleotide sequence