Experiment: NL-CCM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS13305 and EX31_RS13310 are separated by 183 nucleotides EX31_RS13310 and EX31_RS13315 are separated by 6 nucleotides
EX31_RS13305: EX31_RS13305 - ABC transporter ATP-binding protein/permease, at 89,365 to 91,119
_RS13305
EX31_RS13310: EX31_RS13310 - GntR family transcriptional regulator, at 91,303 to 92,043
_RS13310
EX31_RS13315: EX31_RS13315 - PTS transporter subunit EIIC, at 92,050 to 93,651
_RS13315
Position (kb) 91
92
93 Strain fitness (log2 ratio) -2
-1
0
1 at 90.453 kb on - strand, within EX31_RS13305 at 90.487 kb on - strand, within EX31_RS13305 at 90.531 kb on + strand, within EX31_RS13305 at 90.591 kb on + strand, within EX31_RS13305 at 90.592 kb on - strand, within EX31_RS13305 at 90.645 kb on + strand, within EX31_RS13305 at 90.663 kb on + strand, within EX31_RS13305 at 90.663 kb on + strand, within EX31_RS13305 at 90.664 kb on - strand, within EX31_RS13305 at 90.670 kb on + strand, within EX31_RS13305 at 90.694 kb on + strand, within EX31_RS13305 at 90.694 kb on + strand, within EX31_RS13305 at 90.694 kb on + strand, within EX31_RS13305 at 90.695 kb on - strand, within EX31_RS13305 at 90.695 kb on - strand, within EX31_RS13305 at 90.695 kb on - strand, within EX31_RS13305 at 90.695 kb on - strand, within EX31_RS13305 at 90.695 kb on - strand, within EX31_RS13305 at 90.695 kb on - strand, within EX31_RS13305 at 90.751 kb on + strand, within EX31_RS13305 at 90.751 kb on + strand, within EX31_RS13305 at 90.751 kb on + strand, within EX31_RS13305 at 90.751 kb on + strand, within EX31_RS13305 at 90.752 kb on - strand, within EX31_RS13305 at 90.752 kb on - strand, within EX31_RS13305 at 90.753 kb on + strand, within EX31_RS13305 at 90.753 kb on + strand, within EX31_RS13305 at 90.754 kb on - strand, within EX31_RS13305 at 90.754 kb on - strand, within EX31_RS13305 at 90.812 kb on + strand, within EX31_RS13305 at 90.830 kb on - strand, within EX31_RS13305 at 90.909 kb on + strand, within EX31_RS13305 at 90.965 kb on + strand at 90.965 kb on + strand at 90.965 kb on + strand at 90.965 kb on + strand at 90.965 kb on + strand at 90.965 kb on + strand at 90.965 kb on + strand at 90.965 kb on + strand at 90.966 kb on - strand at 90.966 kb on - strand at 90.966 kb on - strand at 90.966 kb on - strand at 90.966 kb on - strand at 90.966 kb on - strand at 90.966 kb on - strand at 90.967 kb on + strand at 90.967 kb on + strand at 90.967 kb on + strand at 90.967 kb on + strand at 90.967 kb on + strand at 90.967 kb on + strand at 90.967 kb on + strand at 90.967 kb on + strand at 90.968 kb on - strand at 90.968 kb on - strand at 90.968 kb on - strand at 90.968 kb on - strand at 90.968 kb on - strand at 91.005 kb on + strand at 91.005 kb on + strand at 91.006 kb on - strand at 91.006 kb on - strand at 91.006 kb on - strand at 91.023 kb on + strand at 91.024 kb on - strand at 91.024 kb on - strand at 91.039 kb on + strand at 91.039 kb on + strand at 91.039 kb on + strand at 91.039 kb on + strand at 91.181 kb on + strand at 91.181 kb on + strand at 91.244 kb on + strand at 91.245 kb on - strand at 91.269 kb on - strand at 91.294 kb on + strand at 91.294 kb on + strand at 91.295 kb on - strand at 91.310 kb on + strand at 91.310 kb on + strand at 91.311 kb on - strand at 91.337 kb on - strand at 91.432 kb on + strand, within EX31_RS13310 at 91.433 kb on - strand, within EX31_RS13310 at 91.472 kb on - strand, within EX31_RS13310 at 91.472 kb on - strand, within EX31_RS13310 at 91.602 kb on + strand, within EX31_RS13310 at 91.603 kb on - strand, within EX31_RS13310 at 91.603 kb on - strand, within EX31_RS13310 at 91.677 kb on + strand, within EX31_RS13310 at 91.677 kb on + strand, within EX31_RS13310 at 91.677 kb on + strand, within EX31_RS13310 at 91.678 kb on - strand, within EX31_RS13310 at 91.699 kb on + strand, within EX31_RS13310 at 91.704 kb on + strand, within EX31_RS13310 at 91.744 kb on + strand, within EX31_RS13310 at 91.745 kb on - strand, within EX31_RS13310 at 91.813 kb on + strand, within EX31_RS13310 at 91.813 kb on + strand, within EX31_RS13310 at 91.813 kb on + strand, within EX31_RS13310 at 91.813 kb on + strand, within EX31_RS13310 at 91.814 kb on - strand, within EX31_RS13310 at 91.814 kb on - strand, within EX31_RS13310 at 91.814 kb on - strand, within EX31_RS13310 at 91.814 kb on - strand, within EX31_RS13310 at 91.819 kb on + strand, within EX31_RS13310 at 91.819 kb on + strand, within EX31_RS13310 at 91.819 kb on + strand, within EX31_RS13310 at 91.819 kb on + strand, within EX31_RS13310 at 91.819 kb on + strand, within EX31_RS13310 at 91.819 kb on + strand, within EX31_RS13310 at 91.819 kb on + strand, within EX31_RS13310 at 91.819 kb on + strand, within EX31_RS13310 at 91.819 kb on + strand, within EX31_RS13310 at 91.819 kb on + strand, within EX31_RS13310 at 91.819 kb on - strand, within EX31_RS13310 at 91.820 kb on - strand, within EX31_RS13310 at 91.820 kb on - strand, within EX31_RS13310 at 91.820 kb on - strand, within EX31_RS13310 at 91.820 kb on - strand, within EX31_RS13310 at 91.820 kb on - strand, within EX31_RS13310 at 91.820 kb on - strand, within EX31_RS13310 at 91.820 kb on - strand, within EX31_RS13310 at 91.820 kb on - strand, within EX31_RS13310 at 91.820 kb on - strand, within EX31_RS13310 at 91.820 kb on - strand, within EX31_RS13310 at 91.821 kb on + strand, within EX31_RS13310 at 91.821 kb on + strand, within EX31_RS13310 at 91.892 kb on + strand, within EX31_RS13310 at 91.892 kb on + strand, within EX31_RS13310 at 91.892 kb on + strand, within EX31_RS13310 at 91.893 kb on - strand, within EX31_RS13310 at 91.893 kb on - strand, within EX31_RS13310 at 91.990 kb on + strand at 91.990 kb on + strand at 91.990 kb on + strand at 91.990 kb on + strand at 91.991 kb on - strand at 91.991 kb on - strand at 91.991 kb on - strand at 91.993 kb on + strand at 91.993 kb on + strand at 91.993 kb on + strand at 91.993 kb on + strand at 91.993 kb on + strand at 91.993 kb on + strand at 91.993 kb on + strand at 91.993 kb on + strand at 91.994 kb on - strand at 91.994 kb on - strand at 91.994 kb on - strand at 91.994 kb on - strand at 91.994 kb on - strand at 92.008 kb on + strand at 92.008 kb on + strand at 92.009 kb on - strand at 92.041 kb on + strand at 92.042 kb on - strand at 92.111 kb on + strand at 92.111 kb on + strand at 92.111 kb on + strand at 92.111 kb on + strand at 92.111 kb on + strand at 92.111 kb on + strand at 92.112 kb on - strand at 92.112 kb on - strand at 92.112 kb on - strand at 92.112 kb on - strand at 92.112 kb on - strand at 92.112 kb on - strand at 92.112 kb on - strand at 92.112 kb on - strand at 92.185 kb on + strand at 92.186 kb on - strand at 92.186 kb on - strand at 92.186 kb on - strand at 92.247 kb on + strand, within EX31_RS13315 at 92.247 kb on + strand, within EX31_RS13315 at 92.248 kb on - strand, within EX31_RS13315 at 92.248 kb on - strand, within EX31_RS13315 at 92.278 kb on - strand, within EX31_RS13315 at 92.396 kb on + strand, within EX31_RS13315 at 92.396 kb on + strand, within EX31_RS13315 at 92.396 kb on + strand, within EX31_RS13315 at 92.397 kb on - strand, within EX31_RS13315 at 92.397 kb on - strand, within EX31_RS13315 at 92.399 kb on + strand, within EX31_RS13315 at 92.399 kb on + strand, within EX31_RS13315 at 92.399 kb on + strand, within EX31_RS13315 at 92.399 kb on + strand, within EX31_RS13315 at 92.400 kb on - strand, within EX31_RS13315 at 92.400 kb on - strand, within EX31_RS13315 at 92.400 kb on - strand, within EX31_RS13315 at 92.400 kb on - strand, within EX31_RS13315 at 92.411 kb on + strand, within EX31_RS13315 at 92.411 kb on + strand, within EX31_RS13315 at 92.412 kb on - strand, within EX31_RS13315 at 92.573 kb on + strand, within EX31_RS13315 at 92.573 kb on + strand, within EX31_RS13315 at 92.573 kb on + strand, within EX31_RS13315 at 92.631 kb on + strand, within EX31_RS13315 at 92.632 kb on - strand, within EX31_RS13315 at 92.632 kb on - strand, within EX31_RS13315 at 92.632 kb on - strand, within EX31_RS13315 at 92.632 kb on - strand, within EX31_RS13315 at 92.679 kb on + strand, within EX31_RS13315 at 92.680 kb on - strand, within EX31_RS13315 at 92.680 kb on - strand, within EX31_RS13315 at 92.680 kb on - strand, within EX31_RS13315 at 92.680 kb on - strand, within EX31_RS13315 at 92.680 kb on - strand, within EX31_RS13315 at 92.702 kb on + strand, within EX31_RS13315 at 92.702 kb on + strand, within EX31_RS13315 at 92.702 kb on + strand, within EX31_RS13315 at 92.702 kb on + strand, within EX31_RS13315 at 92.702 kb on + strand, within EX31_RS13315 at 92.703 kb on - strand, within EX31_RS13315 at 92.703 kb on - strand, within EX31_RS13315 at 92.703 kb on - strand, within EX31_RS13315 at 92.703 kb on - strand, within EX31_RS13315 at 92.703 kb on - strand, within EX31_RS13315 at 92.703 kb on - strand, within EX31_RS13315 at 92.703 kb on - strand, within EX31_RS13315 at 92.826 kb on + strand, within EX31_RS13315 at 92.827 kb on - strand, within EX31_RS13315 at 92.827 kb on - strand, within EX31_RS13315 at 92.827 kb on - strand, within EX31_RS13315 at 92.832 kb on + strand, within EX31_RS13315 at 92.833 kb on - strand, within EX31_RS13315 at 92.850 kb on + strand, within EX31_RS13315 at 92.850 kb on + strand, within EX31_RS13315 at 92.851 kb on - strand, within EX31_RS13315 at 92.908 kb on - strand, within EX31_RS13315 at 92.908 kb on - strand, within EX31_RS13315 at 92.957 kb on + strand, within EX31_RS13315 at 92.957 kb on + strand, within EX31_RS13315 at 92.957 kb on + strand, within EX31_RS13315 at 92.957 kb on + strand, within EX31_RS13315 at 92.958 kb on - strand, within EX31_RS13315 at 92.961 kb on + strand, within EX31_RS13315 at 92.961 kb on + strand, within EX31_RS13315 at 92.961 kb on + strand, within EX31_RS13315 at 92.962 kb on - strand, within EX31_RS13315 at 92.962 kb on - strand, within EX31_RS13315
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM remove 90,453 - EX31_RS13305 0.62 -0.4 90,487 - EX31_RS13305 0.64 -0.4 90,531 + EX31_RS13305 0.66 +0.1 90,591 + EX31_RS13305 0.70 +0.9 90,592 - EX31_RS13305 0.70 +0.0 90,645 + EX31_RS13305 0.73 +0.5 90,663 + EX31_RS13305 0.74 +1.2 90,663 + EX31_RS13305 0.74 +0.2 90,664 - EX31_RS13305 0.74 +0.3 90,670 + EX31_RS13305 0.74 +0.0 90,694 + EX31_RS13305 0.76 +0.2 90,694 + EX31_RS13305 0.76 +0.5 90,694 + EX31_RS13305 0.76 -0.0 90,695 - EX31_RS13305 0.76 -0.3 90,695 - EX31_RS13305 0.76 +0.3 90,695 - EX31_RS13305 0.76 -0.3 90,695 - EX31_RS13305 0.76 +0.4 90,695 - EX31_RS13305 0.76 -0.4 90,695 - EX31_RS13305 0.76 -0.2 90,751 + EX31_RS13305 0.79 +0.9 90,751 + EX31_RS13305 0.79 +0.2 90,751 + EX31_RS13305 0.79 +0.0 90,751 + EX31_RS13305 0.79 +1.3 90,752 - EX31_RS13305 0.79 +0.4 90,752 - EX31_RS13305 0.79 +1.1 90,753 + EX31_RS13305 0.79 +1.5 90,753 + EX31_RS13305 0.79 +0.7 90,754 - EX31_RS13305 0.79 -0.4 90,754 - EX31_RS13305 0.79 +0.8 90,812 + EX31_RS13305 0.82 +0.9 90,830 - EX31_RS13305 0.83 +0.2 90,909 + EX31_RS13305 0.88 +0.7 90,965 + +0.8 90,965 + +0.8 90,965 + +1.1 90,965 + +1.1 90,965 + +0.8 90,965 + +0.3 90,965 + +0.2 90,965 + +0.8 90,966 - -1.2 90,966 - -0.7 90,966 - +0.4 90,966 - +0.5 90,966 - -1.0 90,966 - +0.7 90,966 - +0.1 90,967 + -0.2 90,967 + +0.2 90,967 + +0.5 90,967 + +0.3 90,967 + +0.4 90,967 + +0.3 90,967 + -0.1 90,967 + +0.1 90,968 - -0.4 90,968 - +0.2 90,968 - +0.4 90,968 - +0.2 90,968 - -0.3 91,005 + +1.4 91,005 + +1.1 91,006 - +0.4 91,006 - -0.5 91,006 - -0.6 91,023 + +0.6 91,024 - -0.9 91,024 - +0.3 91,039 + +0.1 91,039 + +0.3 91,039 + +0.7 91,039 + +0.2 91,181 + +0.4 91,181 + -0.4 91,244 + +0.7 91,245 - +0.4 91,269 - -0.3 91,294 + -0.1 91,294 + -1.2 91,295 - -2.1 91,310 + -0.5 91,310 + -1.0 91,311 - -0.5 91,337 - +0.2 91,432 + EX31_RS13310 0.17 +0.6 91,433 - EX31_RS13310 0.18 -0.9 91,472 - EX31_RS13310 0.23 +0.1 91,472 - EX31_RS13310 0.23 -0.6 91,602 + EX31_RS13310 0.40 -1.1 91,603 - EX31_RS13310 0.40 +0.2 91,603 - EX31_RS13310 0.40 -1.7 91,677 + EX31_RS13310 0.50 -2.3 91,677 + EX31_RS13310 0.50 +0.0 91,677 + EX31_RS13310 0.50 -0.5 91,678 - EX31_RS13310 0.51 -0.6 91,699 + EX31_RS13310 0.53 +0.5 91,704 + EX31_RS13310 0.54 -0.7 91,744 + EX31_RS13310 0.60 -0.6 91,745 - EX31_RS13310 0.60 -0.4 91,813 + EX31_RS13310 0.69 +0.5 91,813 + EX31_RS13310 0.69 -0.6 91,813 + EX31_RS13310 0.69 -1.4 91,813 + EX31_RS13310 0.69 +0.2 91,814 - EX31_RS13310 0.69 -0.3 91,814 - EX31_RS13310 0.69 +0.0 91,814 - EX31_RS13310 0.69 -1.0 91,814 - EX31_RS13310 0.69 +0.5 91,819 + EX31_RS13310 0.70 -0.7 91,819 + EX31_RS13310 0.70 -1.1 91,819 + EX31_RS13310 0.70 -0.4 91,819 + EX31_RS13310 0.70 -0.5 91,819 + EX31_RS13310 0.70 -0.2 91,819 + EX31_RS13310 0.70 -0.9 91,819 + EX31_RS13310 0.70 -0.5 91,819 + EX31_RS13310 0.70 -0.5 91,819 + EX31_RS13310 0.70 +0.6 91,819 + EX31_RS13310 0.70 +0.3 91,819 - EX31_RS13310 0.70 -0.7 91,820 - EX31_RS13310 0.70 -0.8 91,820 - EX31_RS13310 0.70 -0.6 91,820 - EX31_RS13310 0.70 -0.4 91,820 - EX31_RS13310 0.70 -0.4 91,820 - EX31_RS13310 0.70 -0.3 91,820 - EX31_RS13310 0.70 -0.6 91,820 - EX31_RS13310 0.70 -0.5 91,820 - EX31_RS13310 0.70 -0.3 91,820 - EX31_RS13310 0.70 -0.8 91,820 - EX31_RS13310 0.70 -0.0 91,821 + EX31_RS13310 0.70 -0.6 91,821 + EX31_RS13310 0.70 +0.2 91,892 + EX31_RS13310 0.79 +0.1 91,892 + EX31_RS13310 0.79 +0.2 91,892 + EX31_RS13310 0.79 -1.2 91,893 - EX31_RS13310 0.80 -0.1 91,893 - EX31_RS13310 0.80 -0.3 91,990 + -0.4 91,990 + +1.3 91,990 + -0.3 91,990 + -0.5 91,991 - +0.2 91,991 - -0.5 91,991 - -0.5 91,993 + +0.0 91,993 + -1.0 91,993 + -1.2 91,993 + +0.0 91,993 + -1.0 91,993 + +0.2 91,993 + -0.2 91,993 + +0.5 91,994 - -1.3 91,994 - +0.1 91,994 - -1.4 91,994 - -1.8 91,994 - -0.2 92,008 + +0.6 92,008 + -0.0 92,009 - +0.0 92,041 + +0.9 92,042 - -1.2 92,111 + +0.7 92,111 + +0.3 92,111 + +0.0 92,111 + +0.1 92,111 + +0.6 92,111 + -0.2 92,112 - -0.1 92,112 - -0.6 92,112 - +0.7 92,112 - +0.4 92,112 - -1.0 92,112 - -0.1 92,112 - -0.2 92,112 - +0.2 92,185 + -0.9 92,186 - +0.2 92,186 - -0.7 92,186 - +1.3 92,247 + EX31_RS13315 0.12 -0.4 92,247 + EX31_RS13315 0.12 +0.6 92,248 - EX31_RS13315 0.12 +0.6 92,248 - EX31_RS13315 0.12 +0.7 92,278 - EX31_RS13315 0.14 -0.5 92,396 + EX31_RS13315 0.22 -0.8 92,396 + EX31_RS13315 0.22 -0.2 92,396 + EX31_RS13315 0.22 -0.1 92,397 - EX31_RS13315 0.22 -0.3 92,397 - EX31_RS13315 0.22 +0.5 92,399 + EX31_RS13315 0.22 +0.6 92,399 + EX31_RS13315 0.22 +0.5 92,399 + EX31_RS13315 0.22 -0.2 92,399 + EX31_RS13315 0.22 -0.3 92,400 - EX31_RS13315 0.22 +0.3 92,400 - EX31_RS13315 0.22 +0.2 92,400 - EX31_RS13315 0.22 +0.6 92,400 - EX31_RS13315 0.22 -0.3 92,411 + EX31_RS13315 0.23 +0.3 92,411 + EX31_RS13315 0.23 -0.2 92,412 - EX31_RS13315 0.23 +0.3 92,573 + EX31_RS13315 0.33 +0.1 92,573 + EX31_RS13315 0.33 -0.8 92,573 + EX31_RS13315 0.33 +0.5 92,631 + EX31_RS13315 0.36 +0.4 92,632 - EX31_RS13315 0.36 +0.4 92,632 - EX31_RS13315 0.36 -0.3 92,632 - EX31_RS13315 0.36 -0.8 92,632 - EX31_RS13315 0.36 +0.2 92,679 + EX31_RS13315 0.39 +0.8 92,680 - EX31_RS13315 0.39 -0.6 92,680 - EX31_RS13315 0.39 +0.4 92,680 - EX31_RS13315 0.39 +0.1 92,680 - EX31_RS13315 0.39 +0.3 92,680 - EX31_RS13315 0.39 +0.2 92,702 + EX31_RS13315 0.41 -0.8 92,702 + EX31_RS13315 0.41 -0.0 92,702 + EX31_RS13315 0.41 -0.3 92,702 + EX31_RS13315 0.41 +1.3 92,702 + EX31_RS13315 0.41 +0.8 92,703 - EX31_RS13315 0.41 -0.5 92,703 - EX31_RS13315 0.41 -0.2 92,703 - EX31_RS13315 0.41 +0.3 92,703 - EX31_RS13315 0.41 +0.1 92,703 - EX31_RS13315 0.41 -0.5 92,703 - EX31_RS13315 0.41 +0.0 92,703 - EX31_RS13315 0.41 +0.1 92,826 + EX31_RS13315 0.48 +0.4 92,827 - EX31_RS13315 0.49 +0.6 92,827 - EX31_RS13315 0.49 +0.4 92,827 - EX31_RS13315 0.49 +0.3 92,832 + EX31_RS13315 0.49 -0.2 92,833 - EX31_RS13315 0.49 -0.5 92,850 + EX31_RS13315 0.50 +0.4 92,850 + EX31_RS13315 0.50 +0.8 92,851 - EX31_RS13315 0.50 -0.3 92,908 - EX31_RS13315 0.54 +0.2 92,908 - EX31_RS13315 0.54 +0.2 92,957 + EX31_RS13315 0.57 +0.0 92,957 + EX31_RS13315 0.57 -0.1 92,957 + EX31_RS13315 0.57 +0.1 92,957 + EX31_RS13315 0.57 +0.8 92,958 - EX31_RS13315 0.57 +0.1 92,961 + EX31_RS13315 0.57 +0.3 92,961 + EX31_RS13315 0.57 +0.6 92,961 + EX31_RS13315 0.57 +0.4 92,962 - EX31_RS13315 0.57 +0.3 92,962 - EX31_RS13315 0.57 -1.3
Or see this region's nucleotide sequence